Wykres commitów

1685 Commity (3bdf7041dcb66d90dd6a3dd3721ea48e2a37f88b)

Autor SHA1 Wiadomość Data
Daniel Nüst 3bdf7041dc sort and pretty print dataverse.json
so that we can track changes and only update the lines of the files that need updating
2019-09-18 08:54:48 +02:00
Tim Head bfbec349c2
[MRG] Add support for installing different versions of R (#772)
[MRG] Add support for installing different versions of R
2019-09-18 08:15:11 +02:00
Tim Head 548b9c8cde
[MRG] Update nteract-on-jupyter to 2.1.3 (#794)
[MRG] Update nteract-on-jupyter to 2.1.3
2019-09-18 08:12:16 +02:00
Tim Head c98e6ace78
[MRG] Dataverse content provider (#739)
[MRG] Dataverse content provider
2019-09-18 08:08:17 +02:00
Kacper Kowalik (Xarthisius) 4df4fd6ab4
Download individual files instead of zip bundle 2019-09-17 15:44:56 -05:00
Kacper Kowalik (Xarthisius) a2f8228b15
Match DV hosts based on netloc instead of url 2019-09-16 15:03:12 -05:00
Kacper Kowalik (Xarthisius) 30375d13df
Use the persistent id from the url regardless whether it's a DOI or not 2019-09-16 14:29:47 -05:00
Kacper Kowalik (Xarthisius) 14b758d327
Improve debug logging 2019-09-16 09:17:15 -05:00
Tim Head b8dd98bd52 Update nteract-on-jupyter to 2.1.3 2019-09-13 22:28:44 +02:00
Kacper Kowalik (Xarthisius) 063fd4dd9a
Add a command for generating dataverse data file 2019-09-13 13:42:41 -05:00
Kacper Kowalik (Xarthisius) 8edafd0d07
Add tests 2019-09-13 13:42:41 -05:00
Kacper Kowalik (Xarthisius) 331a610324
Add Dataverse content provider 2019-09-13 13:42:41 -05:00
Tim Head 649a2c6726
Merge pull request #792 from nuest/contentproviders/figshare_log
Add missing changelog entry
2019-09-12 09:51:02 +02:00
Daniel Nüst 15e8e9ccfb Add changelog entry for #788 2019-09-12 08:27:29 +02:00
Tim Head e33d5f86ca
[MRG] Add Figshare content provider (#788)
[MRG] Add Figshare content provider
2019-09-11 22:17:39 +02:00
Daniel Nüst a40e1799bd fix content_id for Figshare 2019-09-11 13:45:16 +02:00
Daniel Nüst f1ec646d2e add support for Figshare versions > 9 2019-09-11 13:18:20 +02:00
Daniel Nüst 698b8a1d7e try to improve test coverage 2019-09-11 13:17:48 +02:00
Tim Head efab51b314 Update R version documentation 2019-09-09 19:06:22 +02:00
Daniel Nüst b2b75600c0 handle versions in Figshare properly 2019-09-09 08:37:02 +02:00
Tim Head 57919b9b70
Add script to compare Dockerfiles generated by current and older… (#785)
Add script to compare Dockerfiles generated by current and older version of repo2docker
2019-09-08 22:26:56 +02:00
Tim Head 2bbd8eed71
[MRG] Add more test scenarios to Azure pipeline (#790)
[MRG] Add more test scenarios to Azure pipeline
2019-09-08 22:06:45 +02:00
Daniel Nüst b2b6030492 initialize hosts as instance variable 2019-09-08 21:39:48 +02:00
Daniel Nüst 5876439ea7 add documentation how to compare Dockerfiles created between current and oder version of r2d 2019-09-08 21:22:37 +02:00
Daniel Nüst 28261bed52 add docs about building docs 2019-09-08 21:22:37 +02:00
Tim Head 77ca9b9535 Add more test scenarios to Azure pipeline 2019-09-08 18:56:01 +02:00
Tim Head d8c8259343 Raise exception for unsupported R versions 2019-09-08 17:19:50 +02:00
Tim Head 9af9b34937
[MRG] Restore the hooks directory when building the docker image (#786)
[MRG] Restore the hooks directory when building the docker image
2019-09-08 17:17:06 +02:00
Tim Head 9e9dd062bc Restore the hooks directory when building the docker image 2019-09-08 17:11:28 +02:00
Tim Head c50983532e Use LooseVersion to compare versions instead of strings 2019-09-08 14:54:51 +02:00
Daniel Nüst e6cd4b19d9 reuse hosts definition in Zenodo tests 2019-09-08 14:51:17 +02:00
Daniel Nüst 0e4029bb8d add Figshare content provider
moving common functions to a DoiProvider
2019-09-08 14:51:17 +02:00
Tim Head afb24a4a0d
use getpass.getuser instead of os.getlogin (#789)
use getpass.getuser instead of os.getlogin
2019-09-08 14:41:57 +02:00
Min RK 00b7706e1f git needs to be set up 2019-09-08 12:34:11 +02:00
Min RK f47acaa1bd use getpass.getuser instead of os.getlogin
os.getlogin doesn't work everywhere (can raise OSError, inappropriate ioctl for device)
2019-09-08 11:54:22 +02:00
Carol Willing 3f8e56d0d9
Add azure pipelines badge 2019-09-08 11:17:29 +02:00
Carol Willing 98de7d1630
Merge pull request #787 from willingc/test-pipe
Add baseline infra for Azure Pipelines
2019-09-08 11:10:17 +02:00
Carol Willing b3c2c19a45
less tests 2019-09-08 10:31:08 +02:00
Carol Willing f3d9ac4a85
Add azure pipelines for testing 2019-09-08 08:04:24 +02:00
Tim Head 75c2a24c0c
Print Dockerfile to stdout when --no-build (#784)
Print Dockerfile to stdout when --no-build
2019-09-08 07:30:11 +02:00
Tim Head e646419e19
Merge pull request #517 from yuvipanda/help
Provide help text for commandline arguments

Co-authored-by: Min RK <benjaminrk@gmail.com>
2019-09-08 07:29:49 +02:00
Tim Head eae42740b6 Add tests for R version handling 2019-09-08 07:25:10 +02:00
Min RK 8e1bdd9765 only log Dockerfile at debug-level if not dry_run
avoids double-display when using --debug --no-build
2019-09-07 14:28:14 +02:00
Min RK e9c39e2596 respect self.log_level with json logs 2019-09-07 14:25:25 +02:00
Min RK 7f0cac84b5 print Dockerfile to stdout when `--no-build`
Removes need to also specify `--debug` to see the dockerfile, which goes to the logs
2019-09-07 14:25:07 +02:00
Min RK 8ef5faa2ab
Merge pull request #779 from nuest/docker_daemon_logmessage
add explicit log message on failing Docker connection
2019-09-07 14:07:03 +02:00
Tim Head 484dbef959
Merge pull request #782 from minrk/dockerignore-hooks
add hooks to dockerignore
2019-09-07 14:01:59 +02:00
Min RK 28941f7900 add hooks to dockerignore
will hopefully fix dirty flag on docker hub
2019-09-07 13:57:47 +02:00
Min RK 088cf6e308 let black have its way 2019-09-07 13:34:07 +02:00
Tim Head 0b839428cc Use new way of installing bioconductor 2019-09-07 13:30:46 +02:00