kopia lustrzana https://github.com/jupyterhub/repo2docker
Update R version documentation
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@ -212,7 +212,7 @@ If you only need to run things once during the build phase use :ref:`postBuild`.
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Sometimes you want to specify the version of the runtime
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(e.g. the version of Python or R),
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but the environment specification format don't let you specify this information
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but the environment specification format will not let you specify this information
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(e.g. requirements.txt or install.R).
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For these cases, we have a special file, ``runtime.txt``.
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@ -220,7 +220,7 @@ For these cases, we have a special file, ``runtime.txt``.
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``runtime.txt`` is only supported when used with environment specifications
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that do not already support specifying the runtime
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(e.g. when using ``environment.yml`` for conda or ``Project.toml`` for Julia,
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(when using ``environment.yml`` for conda or ``Project.toml`` for Julia,
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``runtime.txt`` will be ignored).
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To use python-2.7: add ``python-2.7`` in runtime.txt file.
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@ -231,8 +231,11 @@ Python 2 installed. To see a full example repository, visit our
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repo2docker uses R libraries pinned to a specific snapshot on
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`MRAN <https://mran.microsoft.com/documents/rro/reproducibility>`_.
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You need to have a ``runtime.txt`` file that is formatted as
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``r-<YYYY>-<MM>-<DD>``, where YYYY-MM-DD is a snapshot at MRAN that will be
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used for installing libraries.
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``r-<RVERSION>-<YYYY>-<MM>-<DD>``, where YYYY-MM-DD is a snapshot at MRAN that will be
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used for installing libraries. You can set RVERSION to 3.4, 3.5 or 3.6 to select
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the version of R you want to use. If you do not specify a R version the latest
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released version will be used (currently R 3.6). You can also specify the exact
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patch release you want to use for the 3.5 and 3.6 series.
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To see an example R repository, visit our `R
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example in binder-examples <https://github.com/binder-examples/r/blob/master/runtime.txt>`_.
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@ -49,10 +49,11 @@ Julia versions 0.6.x and earlier are supported via a :ref:`REQUIRE <REQUIRE>` fi
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R
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~
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Only R 3.4.4 is currently supported, which is installed via ``apt`` from the
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`ubuntu bionic repository <https://packages.ubuntu.com/bionic/r-base>`_.
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The default version of R is currently R 3.6.1. You can select the version of
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R you want to use by specifying it in the :ref:`runtime.txt <runtime.txt>`
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file.
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We support R versions 3.4, 3.5 and 3.6.
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Why is my repository is failing to build with ``ResolvePackageNotFound`` ?
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@ -149,17 +150,17 @@ notebooks (among others).
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the container, use the ``--volumes`` option instead. Similarly,
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for a fully customized user Dockerfile, this option is not
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guaranteed to work.
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Why is my R shiny app not launching?
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----------------------------------------------------------------------------------
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If you are trying to run an R shiny app using the ``/shiny/folder_containing_shiny``
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url option, but the launch returns "The application exited during initialization.",
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there might be something wrong with the specification of the app. One way of debugging
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the app in the container is by running the ``rstudio`` url, open either the ui or
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server file for the app, and run the app in the container rstudio. This way you can
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see the rstudio logs as it tries to initialise the shiny app. If you a missing a
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the app in the container is by running the ``rstudio`` url, open either the ui or
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server file for the app, and run the app in the container rstudio. This way you can
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see the rstudio logs as it tries to initialise the shiny app. If you a missing a
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package or other dependency for the container, this will be obvious at this stage.
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