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2386 Commity (c5246cd9634fbb495657b6f656b9f9c16b266669)

Autor SHA1 Wiadomość Data
Simon Li c5246cd963
Merge pull request #1175 from minrk/3.10 
add Python 3.10 base environment
 2022-08-23 23:47:54 +01:00
Simon Li 2d9c31ac19
Merge pull request #1176 from minrk/docker-platform 
explicitly build linux/amd64 images
 2022-08-23 23:39:57 +01:00
Min RK a8735e9c07
Merge pull request #1178 from minrk/ignore-installed 
get CI working again
 2022-08-23 13:15:16 +02:00
Min RK 0693fae442
install latest mercurial for tests 2022-08-22 15:36:23 +02:00
Min RK a74369c5c7
update ubuntu runner to 20.04 
ubuntu:18.04 runner is shutting down
 2022-08-22 15:27:53 +02:00
Min RK 88acca0e8a
avoid re-resolving dependencies in Dockerfile 
dependencies are resolved during `pip wheel` in the build stage

avoids errors about removing the apk-installed python-packaging
 2022-08-22 15:23:53 +02:00
Min RK 2af4d3d46b
explicitly build linux/amd64 images 
our base-env setup assumes amd64, so avoid platform issues on e.g. ARM
 2022-08-22 15:12:53 +02:00
Min RK cac960d10d
add Python 3.10 base environment 2022-08-22 15:09:02 +02:00
Simon Li d415115b66
Merge pull request #1172 from yuvipanda/bump-nodejs 
Bump version of nodejs
 2022-08-02 21:04:22 +01:00
YuviPanda d695b3dcdf Bump npm version too 2022-08-01 19:51:31 -07:00
YuviPanda be39a1a3f2 Bump up test for nodejs version 2022-08-01 19:51:31 -07:00
YuviPanda d6f5c95e52 bump lock files 2022-08-01 19:51:31 -07:00
YuviPanda 5738d4161c Bump version of nodejs 
16 is also an LTS, and is the current active LTS.

Triggered by code-server package needing a newer version of nodejs!
 2022-08-01 19:51:31 -07:00
Yuvi Panda e725b079da
Merge pull request #1173 from manics/freezepy-update 
Freeze.py update
 2022-08-01 16:58:52 -07:00
Yuvi Panda 42bb1a0383
Merge pull request #1171 from SylvainCorlay/update-mamba 
Update mamba
 2022-08-01 16:48:25 -07:00
Simon Li 7eff2e6c6c freeze.py: Remove `3.6` 
The 3.6 lockfile was removed in https://github.com/jupyterhub/repo2docker/pull/1149 but freeze.py wasn't updated
 2022-08-02 00:04:53 +01:00
Simon Li 671636b9f1 `freeze.py`: needs `--kind=explicit` 
See https://github.com/conda-incubator/conda-lock#pre-10-compatible-usage-explicit-per-platform-locks
 2022-08-02 00:04:11 +01:00
Sylvain Corlay 8a4c48e88f Update mamba 2022-08-01 23:03:15 +02:00
Min RK 18512fe6d9
Merge pull request #1169 from yuvipanda/zenodo-sandbox 
Support pulling from zenodo sandbox too
 2022-08-01 09:40:12 +02:00
YuviPanda b97db1066d Fix indexes in tests that look for staging zenodo 2022-07-28 10:02:10 -07:00
YuviPanda ffdf544ee4 Support pulling from zenodo sandbox too 
Test uploads should go to the sandbox, rather than to
main zenodo. The installation is exactly the same.
 2022-07-27 17:40:14 -07:00
Yuvi Panda 484b29b6c4
Merge pull request #1167 from MPDL/MPDL_Dataverse 
Add MPDL Dataverse
 2022-07-27 17:35:17 -07:00
wilhelmfrank d97e32b433 Add MPDL Dataverse 2022-07-20 08:48:17 +02:00
Yuvi Panda 5b688f48a1
Merge pull request #1166 from consideRatio/pr/use-jupyterhub-bot-accounts-pypi-token 
ci: switch to using a 2fa enabled accounts pypi api-token
 2022-07-08 11:52:29 -07:00
Erik Sundell b1bcbc0f99 ci: switch to using a 2fa enabled accounts pypi api-token 2022-07-08 19:51:17 +02:00
Erik Sundell ae8ed290b9
Merge pull request #1161 from yuvipanda/another-r 
Get R from RStudio provided apt packages (.deb files)
 2022-07-01 07:27:19 +02:00
Yuvi Panda 57a95a3614
Merge pull request #1163 from foobarbecue/patch-1 
Add JPL Dataverse
 2022-06-30 16:09:28 -07:00
Aaron Curtis cae431d115
Add JPL Dataverse 
NASA's Jet Propulsion Laboratory recently implemented a dataverse installation and would like to be able to use it with repo2docker / binderhub
 2022-06-28 17:56:55 -07:00
YuviPanda 8af47e9985 Add comment about how r_version is determined 2022-06-23 12:34:48 -07:00
YuviPanda 28035d6426 Make sure our default R version is valid semver 2022-06-23 09:14:34 -07:00
YuviPanda e51eae9287 Don't specify older patchlevel as default R 2022-06-23 03:23:47 -07:00
Yuvi Panda a098f95dc4
Point to a tagged version of rstudio 
Co-authored-by: Simon Li <orpheus+devel@gmail.com>
 2022-06-22 23:37:42 -07:00
YuviPanda 8ed4c96a8e Put simple test date back to where it was 
Let's remove unnecessary changes
 2022-06-22 16:20:58 -07:00
Yuvi Panda 232dddac50
Fix typo 
Co-authored-by: Simon Li <orpheus+devel@gmail.com>
 2022-06-22 13:40:04 -07:00
YuviPanda dfa23f6306 Set custom env vars required for RStudio to work 2022-06-22 08:49:28 -07:00
YuviPanda 9d89d6bd69 Use . instead of source 
As Dockerfile executes with /bin/sh, not /bin/bash
 2022-06-22 08:49:28 -07:00
YuviPanda a9443f04fe Don't hardcode Ubuntu version when fetching R 
This allows us to dynamically change the base image
without having to manually change the version string here
 2022-06-22 08:49:28 -07:00
YuviPanda 2819a6d1b4 Upgrade simple to a newer r snapshot 
2020 had an older version of testthat that ran into issues

> # Error in get(genname, envir = envir) : object 'testthat_print' not found
 2022-06-22 08:49:28 -07:00
YuviPanda 9fa096d0f6 Don't specify distro specific build number 2022-06-22 08:49:28 -07:00
YuviPanda def4009a6b Remove another unneeded R unit test 
We want users to be able to install new versions of R
as soon as they are out, without us having to do anything
special in repo2docker. So we can't actually check for 'invalid'
R versions. This is ok, as we don't have to special case apt repos
or similar when installing R from rstudio's debs
 2022-06-22 08:49:28 -07:00
YuviPanda 9c335a5e9e Cleanup apt-update files after installation 2022-06-22 08:49:28 -07:00
YuviPanda ba82209e67 Remove tests that checked if specific R packages were installed 2022-06-22 08:49:28 -07:00
YuviPanda c1ce8fd189 Use apt rather than debi to install packages 
apt also seems to fetch dependencies when needed
 2022-06-22 08:49:28 -07:00
YuviPanda d72ac15037 Set CRAN mirror URL for R 2022-06-22 08:49:28 -07:00
YuviPanda c123d7bf32 Use new path for Renviron 2022-06-22 08:49:28 -07:00
YuviPanda 4ccbdddeb5 Install package with gdebi 
It fetches dependencies and installs them too, unlike dpkg
 2022-06-22 08:49:28 -07:00
YuviPanda 13250c73d1 Always provide full semver for R version 
Other wise our semver package cries
 2022-06-22 08:49:28 -07:00
YuviPanda 22167c35f0 Actually install the downloaded deb 2022-06-22 08:49:28 -07:00
YuviPanda 965cb15b99 Get R from RStudio managed apt packages 
Might be simpler than getting it from R project managed
apt packages
 2022-06-22 08:49:27 -07:00
Yuvi Panda 0f0fca19a0
Merge pull request #1148 from aplamada/upgrade_rstudio_server_to_2022_02_1 
[MRG] upgrade RStudio Server to v2022.02.1
 2022-06-22 08:36:30 -07:00