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2441 Commity (b4a1b50984608ef9a381da362b13f2f39732de0b)

Autor SHA1 Wiadomość Data
Erik Sundell b4a1b50984 Update .gitignore 2022-10-24 15:11:02 +02:00
Erik Sundell 0b53691786 refactor: rename docs/doc-requirements.txt to docs/requirements.txt 2022-10-24 15:11:02 +02:00
Erik Sundell 68a0331ea2
Merge pull request #1204 from minrk/submodule-https 
run submodule test over https
 2022-10-24 15:06:35 +02:00
Min RK e9ad8fdb41
run submodule test over https 
avoids assertion with file-based submodules
 2022-10-24 14:30:08 +02:00
Simon Li e0d5b9bb63
Merge pull request #1194 from manics/release-2022.10.0 
Initial changelog for 2022.10.0
 2022-10-18 19:55:02 +01:00
Simon Li d4567417ea
Add #1188 to changelog 2022-10-18 18:48:52 +01:00
Yuvi Panda 380f8177d0
Merge pull request #1188 from consideRatio/pr/ci-speedup 
ci: refactor julia/r/conda tests - now ~25 min instead of ~50 min
 2022-10-17 22:09:35 -07:00
Erik Sundell 1e4bc50a77 refactor readme files: in julia tests 2022-10-16 11:04:10 +02:00
Erik Sundell af076ca7de refactor readme files: in r tests 2022-10-16 11:03:48 +02:00
Erik Sundell 3ea45d1258 refactor readme files: in conda tests 2022-10-16 11:03:24 +02:00
Erik Sundell 6e89647dbc docs: a DESCRIBE file doesn't require a runtime.txt file 2022-10-16 11:02:03 +02:00
Erik Sundell 42bb1b384a ci: adjust to and rename extra-args.yaml to test-extra-args.yaml 
I misunderstood extra-args.yaml to be a file that was recognized by
repo2docker's CLI, but in reality it was just a file recognized by the
repo2docker test suite. Following that, I renamed this testing specific
file to test-extra-args.yaml to help others avoid making that mistake
and added comments to clarify that.

This commit also gathers the conda buildpacks separate readme files into
a single readme file.
 2022-10-15 15:42:35 +02:00
Simon Li 6acab5d1f9 Initial changelog for 2022.10.0 2022-10-14 20:29:22 +01:00
Simon Li d7be04efb5
Merge pull request #1193 from jtpio/update-deps 
[MRG] Update Jupyter dependencies
 2022-10-14 12:27:54 +01:00
Jeremy Tuloup f572c3a9de Update Jupyter dependencies 2022-10-13 14:43:36 +00:00
Erik Sundell a6af244605 ci: refactor julia tests, from 5 to 4 (~5 min saved) 2022-10-10 11:15:56 +02:00
Erik Sundell f1b1339507 ci: refactor conda tests, from 6 to 5 (~5 min saved) 
With this commit, we combine testing the default python version
installation into the default R version installation test.
 2022-10-10 09:15:17 +02:00
Erik Sundell f69d65feb9 ci: refactor conda tests, from 11 to 6 (~20 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell 2c0b14c7da ci: refactor r tests, from 8 to 5 (~15 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell f8d0efe490 ci: delete julia/julialegacy_version-[1|1.1] tests (~10 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell 5ffbe65bec ci: delete conda/channel-dep test of a mamba 0.6+ feature (~5 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell 87dd7e1283 ci: delete conda/r4.0 test, where r3.6 and r4.2 remains (~5 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell b18adce53f ci: test conda/py310 instead of conda/py38 2022-10-10 09:15:17 +02:00
Erik Sundell 3034a09a91 ci: test conda/r4.2 instead of conda/r4.1 2022-10-10 09:15:17 +02:00
Yuvi Panda 27fbab66c0
Merge pull request #1191 from consideRatio/pr/unpin-r-irkernel 
Remove conda buildpacks pin of r-irkernel to 1.2
 2022-10-09 21:41:55 -07:00
Erik Sundell 4540bf1cc9 Remove conda buildpacks pin of r-irkernel to 1.2 
If r-base is pinned, r-irkernel will resolve to a version that is
compatible with it. But if we pin r-irkernel and not r-base, the
opposite will happen and we will end up with an older version of r-base
than is supported by r-irkernel's modern versions.

I find debugging how versions resolve with conda is really tricky, so
unless we have clear principles of what the pin should be and why, I
strongly advocate we don't have it pinned here.

In this case, having r-irkernel pinned to 1.2 caused us to get stuck at
R version 4.1 instead of going to R 4.2 that is now available.
 2022-10-10 01:56:16 +02:00
Erik Sundell c981b3baa7
Merge pull request #1186 from consideRatio/pr/ci-refresh 
ci: general refresh of github workflows, update gha versions and let dependabot do it, etc.
 2022-10-09 13:12:09 +02:00
Erik Sundell 11f2d2dc02 ci: fix typo 2022-10-09 12:58:39 +02:00
Erik Sundell f62d4e0f58 ci: simplify logic to run codecov like in jupyterhub 2022-10-09 12:58:39 +02:00
Erik Sundell d29af17b2e ci: rely on setuptools/pip already installed in github environment 2022-10-09 12:58:39 +02:00
Erik Sundell 55f4663329 ci: add color to pytest 2022-10-09 12:58:39 +02:00
Erik Sundell b927ebdf13 ci: add codecov to dev-requirements.txt 2022-10-09 12:58:39 +02:00
Erik Sundell f65776b2f3 refactor: sort dev-requirements 2022-10-09 12:58:39 +02:00
Erik Sundell f3b0e18c0b ci: fix pip cache issue caused by mixing python versions 2022-10-09 12:58:39 +02:00
Erik Sundell 77c8ef4adb ci: update to run test from python 3.9 2022-10-09 12:58:39 +02:00
Erik Sundell de4b71ea37 ci: update to ubuntu 22.04 runners 2022-10-09 12:58:39 +02:00
Erik Sundell e31e33544a ci: add dependabot for gha version bumping 2022-10-09 12:58:39 +02:00
Erik Sundell 313d495f32 ci: trim away some comments now common knowledge 2022-10-09 12:58:39 +02:00
Erik Sundell 67f77f028c ci: ensure pip cache is reliable and robust 
Previously we had cache keys that could cause issues if the python
version changed etc, and if we re-run something weekly we couldn't say
if we used a new or old version because the cache.
 2022-10-09 12:58:39 +02:00
Erik Sundell a568c3b8e4 ci: update comments in pre-commit to look like most projects 2022-10-09 12:58:39 +02:00
Erik Sundell d1a4f43b08 ci: update github actions 2022-10-09 12:58:39 +02:00
Erik Sundell 2cc0ea6a16 ci: tune workflow triggers 2022-10-09 12:58:39 +02:00
Erik Sundell b3de499659
Merge pull request #1165 from yuvipanda/bump 
Bump default R version to 4.2 from 4.1, and let R 3.4 go from 3.4.0 to 3.4.4
 2022-10-09 10:06:36 +02:00
Erik Sundell 7e517cfb0a Update R 3.4 from 3.4.0 to 3.4.4 2022-10-08 14:07:00 +02:00
Erik Sundell fc08ee1c58 Update R 4.2 from 4.2.0 to 4.2.1 and fix tests 2022-10-08 14:06:29 +02:00
Erik Sundell bdec455ec3
Merge pull request #1185 from manics/r2dstate-enum 
Use enum to standardise `phase`
 2022-10-08 13:02:21 +02:00
Simon Li 1735925116 Use enum to standardise `phase` 2022-10-03 22:49:22 +01:00
Tim Head 0345a86143
Merge pull request #1184 from minrk/unsupported-python 2022-09-08 08:54:36 +02:00
Min RK 1841bf7130
fail on unsupported Python 
rather than warning (which users won't see) and building with the wrong version of Python
 2022-09-06 10:22:27 +02:00
Yuvi Panda 7580a30314
Merge pull request #1182 from minrk/mount-wheels 
mount wheels from build stage instead of copying them
 2022-09-02 14:42:32 -07:00