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2731 Commity (77df191536f12d73ebba134982959f6d1e2c0a3e)

Autor SHA1 Wiadomość Data
Samuel Gaist 77df191536 test(venv): add ignore files above binderdir 
This ensures that the ignore files are retrieved from the proper folder.
If they weren't the build would not succeed as the binder folder is
ignored.
 2024-01-19 08:45:06 +00:00
Samuel Gaist 09e503c4e6 feat: respect the root folder configured when looking for ignore files 
See the design chapter for more details.
 2024-01-19 08:45:06 +00:00
Samuel Gaist a51235f9a5 fix: remove the ignore .git folder default when no exclude files are present 2024-01-19 08:45:06 +00:00
Samuel Gaist d6670f4378 refactor: use list comprehension rather filter+lambda 2024-01-19 08:45:06 +00:00
Samuel Gaist 3028d07182 fix: create src directory in any case 
The original behavior was to create an src directory with the content of the
repository. The creation would happen in any case (remote or local repository).
With the filtering in place and the default to remove the .git folder, it breaks
the build as the src folder can be missing.

This patch ensures that the directory is present in the tar so the build can
continue as it did until now.
 2024-01-19 08:45:06 +00:00
Samuel Gaist 6b8b2334e7 feat: implement support for dockerignore and containerignore 
Currently repo2docker creates a context object that includes the whole content
of the repository it builds an image for. Thus it includes folders like .git
which is usually something that has no interest in the final image, can take
quite a lot of space and most importantly, kills the caching of that layer.

This patch adds support for reading dockerignore and containerignore files that
are used to ensure only the relevant data are used to build the image.

By default it also excludes the .git folder if neither of these files are
provided.
 2024-01-19 08:45:06 +00:00
Simon Li 0e02889faf
Merge pull request #1321 from MPDL/MPDL_Dataverse 
New domain for Edmond MPG repository
 2024-01-18 20:56:57 +00:00
Erik Sundell 7713f2a82f
Merge pull request #1327 from jupyterhub/dependabot/github_actions/actions/upload-artifact-4 
build(deps): bump actions/upload-artifact from 3 to 4
 2024-01-04 01:15:54 +01:00
Erik Sundell 40682d762a
Merge pull request #1322 from jupyterhub/pre-commit-ci-update-config 
[pre-commit.ci] pre-commit autoupdate
 2024-01-04 01:04:55 +01:00
Erik Sundell 809f511799
Merge pull request #1328 from jupyterhub/dependabot/github_actions/actions/setup-python-5 
build(deps): bump actions/setup-python from 4 to 5
 2024-01-04 00:50:08 +01:00
pre-commit-ci[bot] 97ce87c079
[pre-commit.ci] pre-commit autoupdate 
updates:
- [github.com/psf/black: 23.10.1 → 23.12.1](https://github.com/psf/black/compare/23.10.1...23.12.1)
- [github.com/pycqa/isort: 5.12.0 → 5.13.2](https://github.com/pycqa/isort/compare/5.12.0...5.13.2)
- [github.com/pre-commit/mirrors-prettier: v3.0.3 → v4.0.0-alpha.8](https://github.com/pre-commit/mirrors-prettier/compare/v3.0.3...v4.0.0-alpha.8)
 2024-01-01 20:22:43 +00:00
dependabot[bot] 6dc8dee823
build(deps): bump actions/setup-python from 4 to 5 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v4...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
 2024-01-01 05:09:55 +00:00
dependabot[bot] 766f4b8eb4
build(deps): bump actions/upload-artifact from 3 to 4 
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
 2024-01-01 05:09:51 +00:00
haarli 38f6e0acd1
Logo URL 2023-11-10 10:47:13 +01:00
haarli 24fa50118e
New domain for Edmond MPG repository 2023-11-10 09:56:57 +01:00
Min RK c6f97e55c1
Merge pull request #1319 from jupyterhub/pre-commit-ci-update-config 
[pre-commit.ci] pre-commit autoupdate
 2023-11-07 10:03:02 +01:00
pre-commit-ci[bot] 42ffce107d
[pre-commit.ci] pre-commit autoupdate 
updates:
- [github.com/asottile/pyupgrade: v3.14.0 → v3.15.0](https://github.com/asottile/pyupgrade/compare/v3.14.0...v3.15.0)
- [github.com/psf/black: 23.9.1 → 23.10.1](https://github.com/psf/black/compare/23.9.1...23.10.1)
 2023-11-06 20:27:49 +00:00
Erik Sundell 57d229eb19
Merge pull request #1317 from manics/rstudio-logging 
rstudio: log-level info to stderr
 2023-10-23 00:21:44 +02:00
Simon Li 72cfc12a8d rstudio: log-level info to stderr 2023-10-22 19:20:16 +01:00
Yuvi Panda 8bdf681a4a
Merge pull request #1313 from manics/upgrade-mamba 
Upgrade mamba and refreeze
 2023-10-19 12:19:26 +05:30
Simon Li f4591425b4 Fix mamba/conda version test 2023-10-19 10:46:13 +05:30
Simon Li 4b0c7d9bfd conda 23.7.4 
error    libmamba Could not solve for environment specs
    The following packages are incompatible
    ├─ conda 23.9.0**  is requested and can be installed;
    └─ mamba 1.5.1**  is not installable because it requires
       └─ conda >=4.14,<23.9.0a0 , which conflicts with any installable versions previously reported.
 2023-10-19 10:46:13 +05:30
Simon Li 2e26e773b7 ./freeze.py 2023-10-19 10:46:13 +05:30
Simon Li 3ec7d41bce mamba 1.5.1 conda 23.9.0 2023-10-19 10:46:13 +05:30
Yuvi Panda aa57e01d24
Merge pull request #1315 from manics/zenodo 
Get Zenodo working again
 2023-10-19 10:45:09 +05:30
Simon Li fc7de2768b Zenodo DOI now returning https://zenodo.org/records/ instead of https://zenodo.org/record/ 2023-10-15 21:17:51 +01:00
Simon Li 1fc8f192ee doi2url: Don't ignore non-404 errors 2023-10-15 17:17:59 +01:00
Simon Li ebdd121b05 Update zenodo mocks 2023-10-15 17:17:59 +01:00
Simon Li 74a94cf2b0 Test resolving DOI 
This helps distinguish temporary(?) errors in the DOI resolution from errors in the content provider
 2023-10-15 17:17:55 +01:00
Simon Li efb4cd3bbc Attempt to fix Zenodo 
Done by inspecting API responses
- https://zenodo.org/api/records/3242074
- https://zenodo.org/api/records/3242074/files
 2023-10-15 13:43:15 +01:00
Yuvi Panda de496f893b
Merge pull request #1309 from manics/upgrade-guide-ubuntu2204 
Add Ubuntu 22.04 upgrade guide
 2023-10-15 10:08:39 +05:30
Simon Li 2ad8eebd41 ubuntu 18.04: warn about r2d build being frozen in time 2023-10-13 00:14:25 +01:00
Yuvi Panda 8c32db9987
Merge pull request #1310 from yuvipanda/rsession 
r: Bump version of rsession-proxy
 2023-10-12 15:29:19 +00:00
YuviPanda 18ab230b0c Bump rsession-proxy pin instead 
We can move to a proper pinning setup later
 2023-10-12 07:49:13 -07:00
YuviPanda 654199c705 r: Don't strictly pin version of rsession-proxy 
If memory serves me right, the specific version semantics
were here because at some point we were installing different
versions of rsession-proxy for different versions of R. We
don't do that anymore, so we should just unpin it and let the
pip solver install the appropriate version.

Hopefully fixes https://discourse.jupyter.org/t/r-conda-example-repo-isnt-working-any-more/21739/3
 2023-10-12 06:59:45 -07:00
Simon Li 94a0043883 upgrade: Link dockerfile 2023-10-08 15:52:46 +01:00
Simon Li 8f0d763ec4 Add Ubuntu 22.04 upgrade guide 2023-10-08 15:46:22 +01:00
Erik Sundell d0ad8d3715
Merge pull request #1291 from jupyterhub/pre-commit-ci-update-config 
[pre-commit.ci] pre-commit autoupdate
 2023-10-03 12:41:11 +02:00
pre-commit-ci[bot] 714a26e11d
[pre-commit.ci] pre-commit autoupdate 
updates:
- [github.com/asottile/pyupgrade: v3.4.0 → v3.14.0](https://github.com/asottile/pyupgrade/compare/v3.4.0...v3.14.0)
- [github.com/psf/black: 23.3.0 → 23.9.1](https://github.com/psf/black/compare/23.3.0...23.9.1)
- [github.com/pre-commit/mirrors-prettier: v3.0.0-alpha.9-for-vscode → v3.0.3](https://github.com/pre-commit/mirrors-prettier/compare/v3.0.0-alpha.9-for-vscode...v3.0.3)
 2023-10-03 10:35:34 +00:00
Erik Sundell 129f624120
Merge pull request #1307 from jupyterhub/dependabot/github_actions/docker/build-push-action-5 
build(deps): bump docker/build-push-action from 4 to 5
 2023-10-02 12:18:48 +02:00
dependabot[bot] 77289c4719
build(deps): bump docker/build-push-action from 4 to 5 
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 4 to 5.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](https://github.com/docker/build-push-action/compare/v4...v5)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
 2023-10-01 08:52:37 +00:00
Erik Sundell 4cd89f5328
Merge pull request #1306 from jupyterhub/dependabot/github_actions/docker/setup-qemu-action-3 
build(deps): bump docker/setup-qemu-action from 2 to 3
 2023-10-01 10:52:04 +02:00
dependabot[bot] 8ee344ef30
build(deps): bump docker/setup-qemu-action from 2 to 3 
Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action) from 2 to 3.
- [Release notes](https://github.com/docker/setup-qemu-action/releases)
- [Commits](https://github.com/docker/setup-qemu-action/compare/v2...v3)

---
updated-dependencies:
- dependency-name: docker/setup-qemu-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
 2023-10-01 08:26:04 +00:00
Erik Sundell 580101abd9
Merge pull request #1305 from jupyterhub/dependabot/github_actions/docker/setup-buildx-action-3 
build(deps): bump docker/setup-buildx-action from 2 to 3
 2023-10-01 10:25:21 +02:00
Erik Sundell 2d82547742
Merge pull request #1308 from jupyterhub/dependabot/github_actions/actions/checkout-4 
build(deps): bump actions/checkout from 3 to 4
 2023-10-01 10:20:21 +02:00
dependabot[bot] c7d5094e06
build(deps): bump actions/checkout from 3 to 4 
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
 2023-10-01 05:27:30 +00:00
dependabot[bot] df22b13f94
build(deps): bump docker/setup-buildx-action from 2 to 3 
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2 to 3.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](https://github.com/docker/setup-buildx-action/compare/v2...v3)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
 2023-10-01 05:27:20 +00:00
Erik Sundell 3fe6c75a88
Merge pull request #1287 from yuvipanda/bump 
Upgrade base image from to Ubuntu 22.04 from 18.04
 2023-09-18 11:53:35 +02:00
Erik Sundell c53971b1b5
docs: fix outdated reference to ubuntu:bionic 2023-08-08 12:24:41 +02:00
Simon Li d414e994fc
Merge pull request #1299 from SylvainCorlay/update-mamba-1.4.9 
Update conda and mamba
 2023-07-18 16:12:28 +01:00