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2007 Commity (3e6f99cefe624c73771463407bf885d918f77dc2)

Autor SHA1 Wiadomość Data
Tim Head 3e6f99cefe Fix/rewrite paths for codecov filename matching 2021-01-23 10:51:41 +01:00
Tim Head da6e08aec0 Use Python codecov package instead of GH action 
We can't set the working directory of the GH Action which means we need
to install codecov ourselves and run it in the `tests/` sub-directory.
 2021-01-23 10:51:41 +01:00
Tim Head 79325be491 Set working directory for codecov action 2021-01-23 10:51:41 +01:00
Tim Head d56deb02dd Changeg source file aliasing 2021-01-23 10:51:41 +01:00
Tim Head b96412bd33 Specify coverage rule to combine results 
We can specify a rule to map different source files from which coverage
stats were collected to the same source file in our repository.
 2021-01-23 10:51:41 +01:00
Tim Head 6145f463a8 Experiment with different install mechanism to get coverage 2021-01-23 10:51:41 +01:00
Tim Head 45229ad613
Merge pull request #1001 from manics/fix_figshare_test 2021-01-20 11:20:13 +01:00
Tim Head a0606f2b57
Merge pull request #993 from douardda/requests 
Replace urllib by requests in contentproviders
 2021-01-19 17:51:00 +01:00
David Douard 830a9c89c0 Replace urllib by requests in contentproviders 
requests is globally simpler to use, and more and more people
are more familiar with this later than urllib.
 2021-01-18 17:29:53 +01:00
Tim Head c75b5ab72a
Merge pull request #990 from FRidh/nix 
buildpacks/nix: disable sandboxing (bugfix)
 2021-01-17 10:00:20 +01:00
Simon Li ee7f7790d3 figshare article types: code and dataset 2021-01-15 16:11:27 +00:00
Tim Head b464a5e400
Merge pull request #991 from FRidh/nix-2.3.9 
buildpacks/nix: 2.3 -> 2.3.9
 2021-01-13 11:16:06 +01:00
Simon Li 5e6aa2aa9b Mark failing figshare tests as xfail 2021-01-09 11:36:12 +00:00
Simon Li bcc97a2382 Bug in figshare? 
It looks like the new figshare redirects may drop the version suffix causing two tests to fail (see the test comments).
 2021-01-08 23:48:58 +00:00
Simon Li b032ad7c4b Can't just use '([^/]+)/' for the new figshare url 
This may break detection of non-code URLs
 2021-01-08 23:46:57 +00:00
Simon Li c33840fa16 Allow extra path in figshare URLs 
Copied from 1d818e90ca
 2021-01-08 23:29:37 +00:00
Tim Head 2f1914d8d6
Merge pull request #998 from manics/weekly-cronjob 
[MRG] Weekly test of master to check for external failures
 2021-01-07 17:38:05 +01:00
Simon Li 58dca8be5d Weekly test of master to check for external failures 
Test failures can sometimes be quite hard to debug. By adding a weekly automated test run of the default branch we'll have a bit more information on whether a PR is failing due to a change in that PR or due to some external factor.
 2021-01-04 22:35:10 +00:00
Frederik Rietdijk 76444c2351 buildpacks/nix: 2.3 -> 2.3.9 
Update to latest version.
 2020-12-19 09:31:55 +01:00
Frederik Rietdijk 5c4c2dc40e buildpacks/nix: disable sandboxing 
The version bump #915 broke the Nix buildpack in case one does a build.

Nix 2.3 enables sandboxing by default. Building inside a Docker
container, while Nix is having sandboxing enabled is not possible. Thus,
sandbox = false should be set in /etc/nix/nix.conf.
 2020-12-19 09:31:04 +01:00
Min RK 560b1d96a0
Merge pull request #992 from SylvainCorlay/try-mambaforge 
Use mambaforge instead of miniforge
 2020-12-08 15:30:18 +01:00
Sylvain Corlay d8a3d7fa0a Update mamba to latest 2020-12-08 11:23:21 +01:00
Sylvain Corlay 6c1a2722b9 Use mambaforge instead of miniforge 2020-12-06 11:50:11 +01:00
Min RK f3229c1fd5
Merge pull request #983 from jtpio/patch-1 
[MRG] Update to node 14
 2020-11-20 14:59:13 +01:00
Jeremy Tuloup 53a9071e5e Update to node 14 2020-11-20 09:38:44 +01:00
Tim Head 41bd89ee39
Merge pull request #985 from minrk/rm-stencila 
Drop support for stencila
 2020-11-20 07:11:58 +01:00
Min RK edfca79371 Remove support for stencila 
Changes in stencila mean it doesn't work anymore and it's not feasible to update nbstencilaproxy

Instead, show only a warning about removed support for stencila
 2020-11-19 18:17:23 +01:00
Tim Head 968cc43a9e
Merge pull request #984 from tomyun/patch-1 
Add Julia 1.5.3 support
 2020-11-11 09:15:00 +01:00
Kyungdahm Yun 4ca664320d
Add Julia 1.5.3 support 2020-11-10 11:16:42 -08:00
Simon Li 30ef2209cc
Merge pull request #979 from minrk/mamba-061 
Mamba 0.6.1
 2020-10-23 09:58:48 +01:00
Min RK 1bb92770eb regression test for specifying channel name in enviornment.yml dependency 
this didn't work with mamba 0.5
 2020-10-22 15:30:31 +02:00
Min RK e4b1779999 mamba 0.6.1 2020-10-22 15:29:16 +02:00
Min RK 805c555173
Merge pull request #977 from betatim/support-main-and-master 
[MRG] Remove reference to `master` branch from CLI doc
 2020-10-22 10:44:30 +02:00
Tim Head 1ebb4b5d87 Add explicit error message when `master` is specified 
Provide a specific error messaeg with a hint towards solution
when a user specifies `master` as ref and we can't find it.
 2020-10-22 08:04:29 +02:00
Tim Head 19c698e8d3 Remove reference to `master` branch from CLI doc 2020-10-22 07:46:20 +02:00
Tim Head 035574be55
Merge pull request #975 from tomyun/repodir 2020-10-20 15:18:47 +02:00
Kyungdahm Yun 81513b06d6 Add test for writable permission on REPO_DIR 2020-10-19 21:49:09 -07:00
Kyungdahm Yun 8f714b48be Ensure REPO_DIR owned by NB_USER 2020-10-18 00:39:49 -07:00
Tim Head 8c4eaa7a81
Merge pull request #969 from bollwyvl/add-chown-on-copy 2020-10-16 11:11:18 +02:00
Nicholas Bollweg 778c914c8c use jinja var for COPY chown 2020-10-15 08:58:12 -04:00
Nicholas Bollweg dc559b825a add chown to COPY commands to reduce layer count 2020-10-14 23:18:18 -04:00
Tim Head 80b91eb169
Merge pull request #927 from gesiscss/master 2020-10-06 16:06:33 +02:00
Kenan Erdogan 526c914bbb Update docs/source/usage.rst 
Co-authored-by: Simon Li <orpheus+devel@gmail.com>
 2020-10-06 15:04:15 +02:00
Kenan Erdogan d90ede5239 update docs for config dirs 2020-10-06 15:04:15 +02:00
Tim Head ae6c2dc8b9
Merge pull request #965 from tomyun/patch-2 
Add Julia 1.5.2 support
 2020-09-25 14:36:25 +02:00
Tim Head db3ef0d713
Merge pull request #966 from manics/conda-bash-timeformat 
MRG: set TIMEFORMAT for timed bash conda commands
 2020-09-25 14:34:44 +02:00
Simon Li 369b57c794
conda: set TIMEFORMAT for timed bash commands 2020-09-24 19:11:48 +01:00
Kyungdahm Yun 78adb93837
Add Julia 1.5.2 support 2020-09-24 00:00:59 -07:00
Min RK bc9b1aef62
Merge pull request #962 from SylvainCorlay/mamba-number-three 
Mamba number three
 2020-09-22 13:43:17 +02:00
Sylvain Corlay 908bc0f8ff One more time (pun intended) 2020-09-21 15:06:21 +02:00