Chris Holdgraf
af42cd0dea
updating config files to avoid links
2019-11-27 10:56:27 -08:00
Chris Holdgraf
4045cabb73
howto index explanation
2019-11-27 09:49:46 -08:00
Chris Holdgraf
3115a37c63
updating theme to pandas sphinx
2019-11-26 18:12:28 -08:00
Ariel Rokem
b1fbcdd698
DOC: Fixes link rendering
2019-11-08 04:33:42 -08:00
David Brochart
56e6c116f3
Add test
2019-11-05 18:01:06 +01:00
David Brochart
e355b1cf2d
Add change description
2019-11-05 15:20:12 +01:00
Daniel Nüst
5c43a54c41
add Dataverse support to changelog and mention in docs
2019-09-18 09:11:17 +02:00
Tim Head
bfbec349c2
[MRG] Add support for installing different versions of R ( #772 )
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[MRG] Add support for installing different versions of R
2019-09-18 08:15:11 +02:00
Daniel Nüst
15e8e9ccfb
Add changelog entry for #788
2019-09-12 08:27:29 +02:00
Tim Head
e33d5f86ca
[MRG] Add Figshare content provider ( #788 )
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[MRG] Add Figshare content provider
2019-09-11 22:17:39 +02:00
Tim Head
efab51b314
Update R version documentation
2019-09-09 19:06:22 +02:00
Daniel Nüst
5876439ea7
add documentation how to compare Dockerfiles created between current and oder version of r2d
2019-09-08 21:22:37 +02:00
Daniel Nüst
28261bed52
add docs about building docs
2019-09-08 21:22:37 +02:00
Daniel Nüst
0e4029bb8d
add Figshare content provider
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moving common functions to a DoiProvider
2019-09-08 14:51:17 +02:00
Aart Goossens
b4d48a853c
Tiny typo in docs/source/index.rst
2019-08-07 18:02:21 +02:00
Tim Head
7e4b1bd34d
Update Changelog
2019-08-07 09:19:55 +02:00
Scott Henderson
955e422101
clarify application of environment.yml
2019-07-29 17:23:09 +00:00
Minh Hoang
9c29cc022d
Missing punctuation
2019-07-10 09:57:12 -07:00
Minh Hoang
ac952c157e
Update changelog
2019-07-10 09:56:00 -07:00
Tim Head
6e93cb06a4
Merge pull request #649 from consideRatio/pipenv-support
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[MRG/REVIEW] Support Pipfile / Pipfile.lock with pipenv
2019-06-26 07:26:35 +02:00
John
aa3de0c937
updated link for the community edition of docker
2019-06-25 10:42:47 +02:00
Erik Sundell
1bc0a6b206
Pipfile changelog entry
2019-06-24 08:34:22 +02:00
Erik Sundell
6ec9a15037
Iterate on Pipfile documentation
2019-06-24 08:19:01 +02:00
Erik Sundell
e58b5c316e
Merge remote-tracking branch 'upstream/master' into pipenv-support
2019-06-04 08:53:56 +02:00
Tim Head
91fed12e87
Add documentation for installing and using black
2019-06-03 21:37:25 +02:00
Tim Head
c96cadafad
Add basic documentation on Zenodo content provider
2019-05-29 22:27:09 +02:00
Chris Holdgraf
5c33eb08c8
Update docs/source/architecture.md
2019-05-29 10:45:59 -07:00
Chris Holdgraf
be144374bc
Update docs/source/architecture.md
2019-05-28 08:37:25 -07:00
Chris Holdgraf
24c2d6193d
Update docs/source/architecture.md
2019-05-28 08:37:13 -07:00
Chris Holdgraf
90a59b233f
Update docs/source/architecture.md
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Co-Authored-By: Tim Head <betatim@gmail.com>
2019-05-27 21:34:43 -07:00
Chris Holdgraf
dbaec44517
contentprovider
2019-05-25 17:51:57 -07:00
Tim Head
5303010d0e
Drop support for Python 3.4
2019-05-21 22:10:55 +02:00
Erik Sundell
2b0aa99d84
Merge remote-tracking branch 'upstream/master' into pipenv-support
2019-05-12 15:44:10 +02:00
Kacper Kowalik (Xarthisius)
caef6686d1
Do not try to build the image with root as the primary user
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Fixes #267 and #395
2019-05-09 13:06:02 -05:00
Tim Head
e66f0af23c
Revert "[MRG] Do not try to build the image with root as the primary user."
2019-05-09 13:14:32 +02:00
Kacper Kowalik (Xarthisius)
7d948bda8d
Do not try to build the image with root as the primary user
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Fixes #267 and #395
2019-05-08 14:55:43 -05:00
Tim Head
d674eceeba
[MRG] release info updates ( #668 )
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[MRG] release info updates
2019-05-06 00:20:20 +02:00
Chris Holdgraf
56c1160d9a
bumping release date
2019-05-05 11:23:12 -07:00
Chris Holdgraf
63da4c2f36
Merge pull request #664 from betatim/update-changelog-v090
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[MRG] Update change log in preparation for releasing v0.9.0
2019-05-05 11:21:49 -07:00
Chris Holdgraf
a3a4eba89c
Update docs/source/contributing/tasks.md
2019-05-05 10:28:50 -07:00
Tim Head
19cb905102
Mention the invention of the REES in the change log
2019-05-05 15:09:59 +02:00
Tim Head
56708c662e
specification info page ( #662 )
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specification info page
2019-05-05 15:06:59 +02:00
Tim Head
e098d23463
Update change log in preparation for releasing v0.9.0
2019-05-05 15:00:09 +02:00
Chris Holdgraf
00bbde26bb
release info
2019-05-04 15:03:17 -07:00
Chris Holdgraf
f86a06d4ba
tim comments in specification doc
2019-05-04 10:57:27 -07:00
Chris Holdgraf
1c66925090
updates per comments
2019-05-03 09:38:07 -07:00
Wayne's Bioinformatics Code Portal
21c730298e
tweak language to make clear `exec "$@"` works
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originally it was: "The last line must be ``exec "$@"`` equivalent." Seemed open to interpretation as I needed to deduce what the equivalent of that would be here. I think adding 'or' before equivalent shows that will work, but I assume other options exist? Or why note say "The last line must be ``exec "$@"``"?
2019-05-03 11:14:25 -04:00
Chris Holdgraf
b20438bd59
specification info
2019-05-02 16:01:37 -07:00
Tim Head
e35277410a
[MRG] Update contributing guidelines and issue templates ( #655 )
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[MRG] Update contributing guidelines and issue templates
2019-04-30 21:40:15 +02:00
Kirstie Whitaker
a6911a10a0
Update docs/source/contributing/contributing.md
2019-04-30 20:11:17 +01:00
Joseph Hamman
9ded2b5ee6
add note to changelog
2019-04-30 10:06:24 -07:00
Tim Head
5e67e3c743
Support .binder directory ( #653 )
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Support .binder directory
2019-04-30 18:29:38 +02:00
Kirstie Whitaker
6344f39d25
Update contributing.md
2019-04-30 09:23:34 +01:00
Tim Head
34cff4d5d3
Update docs/source/contributing/contributing.md
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Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
2019-04-30 09:20:47 +01:00
Chris Holdgraf
c25e6bc2ae
Update docs/source/contributing/contributing.md
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Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
2019-04-30 09:13:32 +01:00
Joseph Hamman
3c0ceaacc2
clarify that only one of binder and .binder can be used at once
2019-04-28 20:28:09 -07:00
Kirstie Whitaker
6c43fb927a
Extend the points about feature requests & bug reports
2019-04-28 19:58:55 +01:00
Kirstie Whitaker
5a7add7929
Update process and guidelines for making contribution
2019-04-28 19:41:33 +01:00
Kirstie Whitaker
a27420e29f
Add types of contributions section
2019-04-28 19:11:32 +01:00
Joseph Hamman
c230c70f4e
support for .binder directory
2019-04-27 17:01:20 -07:00
Min RK
2acf0974c3
miniconda is 4.6.14
2019-04-26 16:25:41 +02:00
Min RK
109793bffd
conda 4.6.14
2019-04-26 16:09:00 +02:00
Min RK
1f7d91af5f
Merge remote-tracking branch 'jhamman/bump_conda_ver' into conda-env
2019-04-26 16:05:38 +02:00
Erik Sundell
5df7a3628c
Document pipfile(.lock) as an option
2019-04-21 00:30:11 +02:00
Tim Head
843b7a5e30
Unpin pip again
2019-04-16 21:49:37 +02:00
Chris Holdgraf
2db2f4683c
mentioning s2i in faq
2019-04-12 11:46:13 -07:00
Lindsey Heagy
f936cf566c
Merge pull request #640 from betatim/fix-spinx-deprecation
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[MRG] Fix sphinx deprecation for recommonmark
2019-04-09 18:34:23 -07:00
Tim Head
f4e3754434
Update change log
2019-04-08 16:43:49 +02:00
Tim Head
cbb375e156
Black-ify the sphinx configuration code
2019-04-08 07:52:25 +02:00
Tim Head
da9f8de0e3
Update recommonmark ocnfiguration
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In new versions of SPhinx the way we were configuring the recommonmark
extension has become deprecated. This switches us to the new way of
configuring it.
2019-04-08 07:51:30 +02:00
Joseph Hamman
f9620edd8e
freeze versions
2019-04-04 13:35:12 -07:00
Joseph Hamman
bf3d0c133c
fallback to 4.6.10
2019-04-04 12:29:34 -07:00
Joseph Hamman
a3d4f95de0
changelog addition
2019-04-04 11:54:33 -07:00
Min RK
8d8c21e55e
Merge pull request #631 from jtpio/docs-default-py37
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[MRG] Python 3.7 as the default in the docs
2019-03-29 16:01:44 +01:00
Jeremy Tuloup
177ee4b650
Python 3.7 as default in the docs
2019-03-27 21:54:50 +01:00
David Anthoff
65d4e6c034
Update changelog
2019-03-21 12:55:19 -07:00
Tim Head
e921993098
Merge pull request #622 from davidanthoff/ijulia-kernel-install-location
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Install IJulia kernel into proper directory
2019-03-21 20:36:40 +01:00
David Anthoff
ae86baaa52
Use NB_PYTHON_PREFIX for kernel install path
2019-03-21 09:07:12 -07:00
Tim Head
ed77345cc5
Add an issue template to direct where things are posted
2019-03-17 04:12:59 -04:00
David Anthoff
61ece15c75
Update changelog
2019-03-13 09:18:23 -07:00
Fredrik Ekre
95a59026ae
Julia: Update links to Pkg.jl documentation and change
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Compat to [compat] since that is how the section is
usually referred to.
2019-03-13 09:26:57 +01:00
Athanasia Monika Mowinckel
8ed4bf32d4
moved the shiny faq below the note
2019-03-08 21:41:36 +01:00
Athanasia Monika Mowinckel
736c3dace9
added some debug for R shiny
2019-03-08 19:49:21 +01:00
Tim Head
63ac63f3e7
Merge pull request #608 from agitter/patch-1
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Expand environment.yml config notes
2019-03-07 22:29:44 +01:00
Anthony Gitter
14754dc8d3
Minor rephrasing
2019-03-06 10:49:48 -06:00
Tim Head
5072b8e609
Update docs/source/config_files.rst
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Co-Authored-By: agitter <agitter@users.noreply.github.com>
2019-03-06 10:49:04 -06:00
Tim Head
a9dd69a3ce
Merge pull request #595 from davidanthoff/reorg-julia
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[MRG+1] Split julia support into pre julia 1.0 and post julia 1.0
2019-03-06 13:18:21 +01:00
David Anthoff
e845db33da
Update julia documentation
2019-03-05 21:09:56 -08:00
Nathan Daly
f6074aaa3f
Update docs/source/faq.rst
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Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
2019-03-05 17:56:51 -08:00
Nathan Daly
4a882f445a
Update docs/source/config_files.rst
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Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
2019-03-05 17:56:22 -08:00
Anthony Gitter
bacf84bbcd
Expand environment.yml config notes
2019-03-05 19:24:19 -06:00
David Anthoff
9600d4b438
Fix changelog formatting
2019-03-05 08:45:25 -08:00
Tim Head
07bd9be43c
Update docs/source/changelog.rst
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Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
2019-03-05 08:28:21 -08:00
Tim Head
5234df2bc6
Update link targets and remove markdown formatting
2019-03-05 10:57:18 +01:00
Tim Head
c7d62a3387
Change contributor guide language to remove the word "code"
2019-03-05 07:46:54 +01:00
Tim Head
c2ab134db0
Add PR template with links to contrib docs
2019-03-05 07:40:44 +01:00
David Anthoff
2f8d43d5f0
Update changelog
2019-03-04 21:32:53 -08:00
David Anthoff
3ba4c5766b
Merge branch 'master' into reorg-julia
2019-03-04 21:31:12 -08:00
Tim Head
6689ee3b97
Update docs/source/faq.rst
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Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
2019-03-04 21:30:17 -08:00
Tim Head
73a1a6da61
Update docs/source/faq.rst
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Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
2019-03-04 21:29:54 -08:00
Tim Head
1427cd1047
Reopen change log
2019-03-04 19:50:37 +01:00
David Anthoff
5790933d8c
Update documentation with new julia support
2019-03-02 17:27:58 -08:00
Tim Head
a4063e3d8d
Add FAQ entry and Howto on exporting conda envs
2019-03-02 08:40:35 +01:00
Tim Head
ed514946ed
Fix release date of 0.8.0
2019-02-21 14:49:09 +01:00
Tim Head
af2cc83aa7
Merge pull request #577 from betatim/releasing-0.7.1
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[MRG] Update ChangeLog to release 0.8.0
2019-02-21 12:09:13 +01:00
Tim Head
35d1cac0bd
Update ChangeLog to the v0.8.0 release of repo2docker.
2019-02-21 11:43:04 +01:00
Tim Head
7fa922a612
Fix up double label trouble in the config file docs
2019-02-21 11:34:32 +01:00
Tim Head
397695bbaa
Merge pull request #539 from yuvipanda/v3.7
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Bump default python version to 3.7
2019-02-21 11:06:03 +01:00
Min RK
de3658442b
update docs for pinning Python
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- clarify that runtime.txt is only for env files that don't support runtime specification
- specify default version of Python and when it changed
- more links to pinning docs
2019-02-21 10:20:56 +01:00
Min RK
2baf31dc8a
add default_python replacement to sphinx
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and get docs version from the package so it doesn't get out of date
2019-02-21 10:07:54 +01:00
Tim Head
bc5a53d977
Update documentation with more cross references
2019-02-21 08:38:38 +01:00
Tim Head
349f801aae
install: don't rely on git, download zip file directly
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Co-Authored-By: haraldschilly <harald.schilly@gmail.com>
2019-02-20 15:19:57 +01:00
Harald Schilly
74cb6dbde7
install: one-liner to install most recent upstream code
2019-02-20 12:37:48 +01:00
Yuvi Panda
e3d82f8a7c
Merge pull request #568 from choldgraf/docsupdate
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updating interfaces page and adding jupyterlab workspaces page
2019-01-30 11:36:35 -08:00
Lindsey Heagy
d8ccc8085d
Update conf.py
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update copyright year in the docs
2019-01-29 22:06:14 -08:00
Chris Holdgraf
112b718758
lowercase n
2019-01-29 14:12:19 -08:00
Lindsey Heagy
01fedb2b80
Update docs/source/howto/lab_workspaces.rst
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Co-Authored-By: choldgraf <choldgraf@gmail.com>
2019-01-29 14:10:21 -08:00
Chris Holdgraf
88042fff84
updating interfaces page
2019-01-28 20:09:47 -08:00
Craig Willis
0b368773e5
Fixed sphinx error finding changelog
2019-01-09 14:20:13 -06:00
Tim Head
8d2617479a
Merge pull request #526 from minrk/annotated-tags
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Add tag command snippet
2018-12-20 21:08:52 +01:00
James Bourbeau
a9e9399e06
Minor howto doc fixes
2018-12-20 10:16:37 -06:00
Tim Head
27a5243072
Update docs/source/contributing/tasks.md
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Co-Authored-By: minrk <benjaminrk@gmail.com>
2018-12-20 14:16:07 +01:00
Min RK
8d4f0242f9
Add tag command snippet
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make sure it's an annotated tag
2018-12-19 13:55:00 +01:00
James Bourbeau
1bb2b2f3a7
Move autoprogram to doc requirements
2018-12-17 16:04:47 -06:00
James Bourbeau
9421c73117
Add CLI API docs
2018-12-17 13:06:32 -06:00
James Bourbeau
5f65cd0858
Use relative link to changelog [skip travis]
2018-12-17 08:49:56 -06:00
James Bourbeau
2f00a1444c
Update new contributing guide changelog ref [skip travis]
2018-12-17 08:46:21 -06:00
James Bourbeau
d78125b91b
Merge remote-tracking branch 'upstream/master' into move-changelog
2018-12-17 08:37:38 -06:00
James Bourbeau
4f3d5de778
Add GitHub users to extlinks
2018-12-17 08:36:29 -06:00
Tim Head
3f9f4918c5
Fix typos and syntax errors in the documentation
2018-12-15 08:40:27 +01:00
James Bourbeau
454782426e
Move changelog to docs
2018-12-14 14:20:47 -06:00
Tim Head
de348d548c
Update roadmap
2018-12-10 11:39:15 +01:00
Chris Holdgraf
cfd3dbdb5f
removing note that env.yml is needed for julia
2018-11-26 10:21:02 -06:00
Carol Willing
310e2b8512
Merge pull request #463 from betatim/add-logo
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[MRG] Add and use new logo
2018-11-12 14:07:30 -08:00
Yuvi Panda
c489f54a05
Merge pull request #448 from betatim/nix-experiment
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[MRG] Switch to BaseImage for nix build pack
2018-11-12 13:56:30 -08:00
Tim Head
9b10b33525
Update docs/doc-requirements.txt
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Co-Authored-By: trallard <taniar.allard@gmail.com>
2018-11-12 08:24:47 +00:00
Tania Allard
49357a4875
Ensure the deps and references are correct across all files
2018-11-11 16:01:45 +00:00
Tania Allard
b924d7227d
Add docs: how to use the Pipfile and to update this too
2018-11-11 11:32:22 +00:00
Carol Willing
dbd1f33b3d
Merge pull request #465 from betatim/roadmaping
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[MRG] Add a first roadmap
2018-11-09 10:08:27 -08:00
Tim Head
e239c494c3
Add link to binder-examples repo for nix
2018-11-09 15:23:01 +01:00
Tim Head
58cbe1797d
Merge pull request #457 from nuest/stencila
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Updates for Stencila
2018-11-09 13:56:23 +01:00
Tim Head
c05f30d13c
Introduce extra level of headers in the roadmap
2018-11-09 13:46:18 +01:00
Tim Head
c924f5fa48
Update documentation on the nix build pack
2018-11-09 08:12:56 +01:00
Tim Head
3a4e599ee9
Incorporate feedback on the roadmap
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Improves naming of sections and the description of what each step and the
process around the roadmap looks like.
2018-11-08 19:01:31 +01:00
Tim Head
b9dba98c65
Add a first roadmap
2018-11-06 23:15:50 +01:00
nuest
e576c03446
describe more complex detection mechanism used for stencila in dev docs
2018-11-06 20:17:19 +01:00
Tim Head
26fb8a730e
Add SVG logo
2018-11-05 17:33:23 +01:00
Tim Head
5cdd0ee371
Merge pull request #407 from costrouc/costrouc/nix-buildpack
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Adding support for nix buildpack in repo2docker
2018-11-05 15:27:48 +01:00
Tim Head
25c45fd8e5
Add and use new logo
2018-11-05 14:01:01 +01:00
nuest
8d9a48717a
add Stencila to user interface docs
2018-10-30 15:59:42 +01:00