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494 Commity (27c2b403dbd3b6bb1b31f687ca4069434301465f)

Autor SHA1 Wiadomość Data
pre-commit-ci[bot] 27c2b403db [pre-commit.ci] auto fixes from pre-commit.com hooks 
for more information, see https://pre-commit.ci
 2022-10-31 22:32:14 +00:00
Erik Sundell 15a1fb6e2d refactor: manually add transitions to f-strings 2022-10-31 21:22:32 +01:00
pre-commit-ci[bot] 5a93542321 [pre-commit.ci] auto fixes from pre-commit.com hooks 
for more information, see https://pre-commit.ci
 2022-10-31 21:22:32 +01:00
Min RK 757799516d
ensure some cache files are cleaned up 2022-10-31 15:23:35 +01:00
Min RK bd02e2e997
run check-tmp as root 
- avoids permission errors
- lets us check /root/ where we've left files in the past
 2022-10-31 15:22:56 +01:00
Min RK 2da784ca21
check-tmp needs to run on Python 3.5 2022-10-31 15:22:55 +01:00
Min RK 38f5aceb45
Add check-tmp step to local repo tests 
- check-tmp checks disk usage in a collection of directories,
  and fails if they exceed a certain size, reporting on contents
- re-use images and skip build stage in verify/check-tmp tests.
  Should save some time,
  even though the build cache would have been used.
  This way, we don't even check.
 2022-10-31 15:22:52 +01:00
Nicholas Bollweg 23e195f363 add path check in conda/repo-dir, more docs in conftest.py 2022-10-31 13:09:17 +01:00
Erik Sundell b3234b54f0 Refactor to f-strings to comply with pyupgrade 2022-10-31 12:57:23 +01:00
Min RK b314ba90cd test new port argument possibilities 2022-10-31 12:57:23 +01:00
Min RK e9ad8fdb41
run submodule test over https 
avoids assertion with file-based submodules
 2022-10-24 14:30:08 +02:00
Erik Sundell 1e4bc50a77 refactor readme files: in julia tests 2022-10-16 11:04:10 +02:00
Erik Sundell af076ca7de refactor readme files: in r tests 2022-10-16 11:03:48 +02:00
Erik Sundell 3ea45d1258 refactor readme files: in conda tests 2022-10-16 11:03:24 +02:00
Erik Sundell 42bb1b384a ci: adjust to and rename extra-args.yaml to test-extra-args.yaml 
I misunderstood extra-args.yaml to be a file that was recognized by
repo2docker's CLI, but in reality it was just a file recognized by the
repo2docker test suite. Following that, I renamed this testing specific
file to test-extra-args.yaml to help others avoid making that mistake
and added comments to clarify that.

This commit also gathers the conda buildpacks separate readme files into
a single readme file.
 2022-10-15 15:42:35 +02:00
Erik Sundell a6af244605 ci: refactor julia tests, from 5 to 4 (~5 min saved) 2022-10-10 11:15:56 +02:00
Erik Sundell f1b1339507 ci: refactor conda tests, from 6 to 5 (~5 min saved) 
With this commit, we combine testing the default python version
installation into the default R version installation test.
 2022-10-10 09:15:17 +02:00
Erik Sundell f69d65feb9 ci: refactor conda tests, from 11 to 6 (~20 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell 2c0b14c7da ci: refactor r tests, from 8 to 5 (~15 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell f8d0efe490 ci: delete julia/julialegacy_version-[1|1.1] tests (~10 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell 5ffbe65bec ci: delete conda/channel-dep test of a mamba 0.6+ feature (~5 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell 87dd7e1283 ci: delete conda/r4.0 test, where r3.6 and r4.2 remains (~5 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell b18adce53f ci: test conda/py310 instead of conda/py38 2022-10-10 09:15:17 +02:00
Erik Sundell 3034a09a91 ci: test conda/r4.2 instead of conda/r4.1 2022-10-10 09:15:17 +02:00
Erik Sundell b3de499659
Merge pull request #1165 from yuvipanda/bump 
Bump default R version to 4.2 from 4.1, and let R 3.4 go from 3.4.0 to 3.4.4
 2022-10-09 10:06:36 +02:00
Erik Sundell fc08ee1c58 Update R 4.2 from 4.2.0 to 4.2.1 and fix tests 2022-10-08 14:06:29 +02:00
Min RK 1841bf7130
fail on unsupported Python 
rather than warning (which users won't see) and building with the wrong version of Python
 2022-09-06 10:22:27 +02:00
YuviPanda d695b3dcdf Bump npm version too 2022-08-01 19:51:31 -07:00
YuviPanda be39a1a3f2 Bump up test for nodejs version 2022-08-01 19:51:31 -07:00
Yuvi Panda 42bb1a0383
Merge pull request #1171 from SylvainCorlay/update-mamba 
Update mamba
 2022-08-01 16:48:25 -07:00
Sylvain Corlay 8a4c48e88f Update mamba 2022-08-01 23:03:15 +02:00
YuviPanda b97db1066d Fix indexes in tests that look for staging zenodo 2022-07-28 10:02:10 -07:00
YuviPanda 0b76608208 Bump default R version to 4.2 
Been out for a bit now
 2022-07-06 16:39:15 -07:00
YuviPanda 8ed4c96a8e Put simple test date back to where it was 
Let's remove unnecessary changes
 2022-06-22 16:20:58 -07:00
YuviPanda 2819a6d1b4 Upgrade simple to a newer r snapshot 
2020 had an older version of testthat that ran into issues

> # Error in get(genname, envir = envir) : object 'testthat_print' not found
 2022-06-22 08:49:28 -07:00
YuviPanda 9fa096d0f6 Don't specify distro specific build number 2022-06-22 08:49:28 -07:00
YuviPanda def4009a6b Remove another unneeded R unit test 
We want users to be able to install new versions of R
as soon as they are out, without us having to do anything
special in repo2docker. So we can't actually check for 'invalid'
R versions. This is ok, as we don't have to special case apt repos
or similar when installing R from rstudio's debs
 2022-06-22 08:49:28 -07:00
YuviPanda ba82209e67 Remove tests that checked if specific R packages were installed 2022-06-22 08:49:28 -07:00
Dara Adib 56bf03811e Add test for shallow clone HEAD 2022-06-02 20:54:43 -04:00
YuviPanda 672c21ff82 Make black happy 2022-04-08 13:55:06 -07:00
Min RK 5cfd798008 handle r version unspecified in environment.yml 2022-02-25 12:03:40 +01:00
Simon Li c83efb0427
Merge pull request #1130 from minrk/bump-python-docker 
update Python in some dockerfile tests
 2022-02-12 14:58:44 +00:00
Min RK 84220028bd put micromamba in /usr/local/bin 
instead of tmp, since we want it to stick around.
 2022-01-28 15:58:36 +01:00
Min RK f2f8bb666e update Python in dockerfile tests 
installing with Python 3.5 is starting to fail
 2022-01-28 15:48:55 +01:00
Min RK 7f89926e51
Merge pull request #1062 from wolfv/micromamba 
bootstrap base env with micromamba
 2022-01-27 09:42:53 +01:00
Min RK d728a64dd9 get version comparison from semver 
since Python is removing version string parsing from the standard library

moves Julia-specific semver utilities to top-level
 2022-01-26 15:52:09 +01:00
Min RK 8ab5c81245 remove deprecated call to distutils strtobool 2022-01-26 09:56:15 +01:00
Simon Li 813d28bfdb
Merge pull request #1115 from minrk/set-user-root 
set USER root after each directive block
 2022-01-25 14:55:11 +00:00
YuviPanda 9066d079d0 Use testthat, rather than tinytest 
tinytest doesn't exist in older MRAN snapshots
 2022-01-25 19:38:47 +05:30
Min RK 945c45299f set USER root after each directive block 
matches expectations in the directive sequences

not strictly required after preassemble because we have no root steps between preassemble and assemble,
so we could remove the `last_user = "root"` there instead

includes regression test
 2022-01-25 14:48:37 +01:00