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1441 Commity (02ec2255d6b8863f099b86132bf7f6104574045d)

Autor SHA1 Wiadomość Data
Tim Head 02ec2255d6 Use getpass instead of pwd to fetch username 
getpass is available onn windows as well as unix, whereas pwd is not
available on windows.
 2019-05-23 09:45:28 +02:00
Yuvi Panda 368a64018d
Merge pull request #684 from betatim/drop-python3.4 
[MRG] Drop support for Python 3.4
 2019-05-22 13:48:04 -07:00
Tim Head 5303010d0e Drop support for Python 3.4 2019-05-21 22:10:55 +02:00
Tim Head 25ebca049c
Do not try to build the image with root as the primary user (#679) 
Do not try to build the image with root as the primary user
 2019-05-10 07:51:44 +02:00
Kacper Kowalik (Xarthisius) caef6686d1
Do not try to build the image with root as the primary user 
Fixes #267 and #395
 2019-05-09 13:06:02 -05:00
Tim Head fedd58aaf7
Revert "[MRG] Do not try to build the image with root as the primary user." (#678) 
Revert "[MRG] Do not try to build the image with root as the primary user."
 2019-05-09 13:18:24 +02:00
Tim Head e66f0af23c
Revert "[MRG] Do not try to build the image with root as the primary user." 2019-05-09 13:14:32 +02:00
Tim Head 4514ba31ec
Merge pull request #676 from Xarthisius/no_root 
[MRG] Do not try to build the image with root as the primary user.
 2019-05-08 23:12:41 +02:00
Kacper Kowalik (Xarthisius) 7d948bda8d
Do not try to build the image with root as the primary user 
Fixes #267 and #395
 2019-05-08 14:55:43 -05:00
Yuvi Panda 2086b7a437
[MRG] Update base image used for memory limit checks (#677) 
[MRG] Update base image used for memory limit checks
 2019-05-08 12:46:04 -07:00
yuvipanda 74fc378230 Clarify comment around memswap & memory 2019-05-08 09:44:58 -07:00
Tim Head 2eb4781c2e Swap limit doesn't have to be bigger than memory limit 2019-05-08 18:22:11 +02:00
Tim Head 032baf6d04 Add check to `build()` for memory limit type 2019-05-08 14:23:43 +02:00
Tim Head 9f44075839 Fix cache-from tests to pass memory limit as integer 2019-05-08 13:20:10 +02:00
Tim Head ef2860371a Fix memory limits set for container image builds 2019-05-08 08:11:38 +02:00
Tim Head 5adc4b257e Update base image used for memory limit checks 2019-05-07 19:12:34 +02:00
Tim Head d674eceeba
[MRG] release info updates (#668) 
[MRG] release info updates
 2019-05-06 00:20:20 +02:00
Erik Sundell fb5c4efb73
Merge pull request #666 from betatim/clean-up-during-conda-install 
[MRG] Remove the conda package cache as we can't hardlink to it
 2019-05-05 22:47:51 +02:00
Chris Holdgraf 734664a0ba
Merge pull request #669 from choldgraf/release_date 
bumping release date
 2019-05-05 11:24:01 -07:00
Chris Holdgraf 56c1160d9a bumping release date 2019-05-05 11:23:12 -07:00
Chris Holdgraf 63da4c2f36
Merge pull request #664 from betatim/update-changelog-v090 
[MRG] Update change log in preparation for releasing v0.9.0
 2019-05-05 11:21:49 -07:00
Chris Holdgraf a3a4eba89c
Update docs/source/contributing/tasks.md 2019-05-05 10:28:50 -07:00
Tim Head 19cb905102 Mention the invention of the REES in the change log 2019-05-05 15:09:59 +02:00
Tim Head 56708c662e
specification info page (#662) 
specification info page
 2019-05-05 15:06:59 +02:00
Tim Head e098d23463 Update change log in preparation for releasing v0.9.0 2019-05-05 15:00:09 +02:00
Tim Head f51ba7604e Use `-f --all` for conda clean up 2019-05-05 14:55:58 +02:00
Chris Holdgraf 00bbde26bb release info 2019-05-04 15:03:17 -07:00
Chris Holdgraf f86a06d4ba tim comments in specification doc 2019-05-04 10:57:27 -07:00
Tim Head 3a6e4b4851 Remove pip cache in root's home directory 2019-05-04 13:03:50 +02:00
Tim Head 240efebcf2 Remove the conda package cache as we can't hardlink to it 2019-05-04 12:32:26 +02:00
Chris Holdgraf 1c66925090 updates per comments 2019-05-03 09:38:07 -07:00
Tim Head df89849e21
tweak language to make clear `exec "$@"` works (#663) 
tweak language to make clear `exec "$@"` works
 2019-05-03 18:18:42 +02:00
Wayne's Bioinformatics Code Portal 48578bda66
Merge pull request #1 from fomightez/tweak_start_config_descr 
tweak language to make clear `exec "$@"` works
 2019-05-03 11:18:34 -04:00
Wayne's Bioinformatics Code Portal 21c730298e
tweak language to make clear `exec "$@"` works 
originally it was: "The last line must be ``exec "$@"`` equivalent." Seemed open to interpretation as I needed to deduce what the equivalent of that would be here. I think adding 'or' before equivalent shows that will work, but I assume other options exist? Or why note say  "The last line must be ``exec "$@"``"?
 2019-05-03 11:14:25 -04:00
Chris Holdgraf b20438bd59 specification info 2019-05-02 16:01:37 -07:00
Tim Head e976627c1e
Merge pull request #657 from yuvipanda/abs-start 
Make sure ENTRYPOINT is an absolute path
 2019-04-30 21:44:50 +02:00
Tim Head e35277410a
[MRG] Update contributing guidelines and issue templates (#655) 
[MRG] Update contributing guidelines and issue templates
 2019-04-30 21:40:15 +02:00
Tim Head 92d69010c7
Merge pull request #652 from betatim/fix-memory-limit 
[MRG] Fix handling of memory limit command line argument
 2019-04-30 21:34:52 +02:00
Kirstie Whitaker a6911a10a0
Update docs/source/contributing/contributing.md 2019-04-30 20:11:17 +01:00
Tim Head c56e8b1f21
add note to changelog (#659) 
add note to changelog
 2019-04-30 19:50:27 +02:00
yuvipanda c8cff1bccc Fix typo in comment 2019-04-30 10:46:34 -07:00
yuvipanda c0a33b340b Add test for integral --build-memory-limit 2019-04-30 10:46:09 -07:00
Joseph Hamman 9ded2b5ee6 add note to changelog 2019-04-30 10:06:24 -07:00
yuvipanda 4dd32f3563 Make sure ENTRYPOINT is an absolute path 
Unlike other parts of the generated Dockerfile,
the start script is evaluated at run time, rather
than at build time. Currently, we assume that the
current working directory is the same at runtime
as build time for the start script. This doesn't
hold true always, and particularly not in JupyterHub
environments where ${HOME} is often overlaid with
a persistent directory.

We change this to always refer to the full path,
using the ${REPO_DIR} environment variable. This
lets people building JupyterHub images to set
REPO_DIR to something like /srv/repo (like hubploy
does), and still have a working start script.
 2019-04-30 10:04:53 -07:00
Tim Head 5e67e3c743
Support .binder directory (#653) 
Support .binder directory
 2019-04-30 18:29:38 +02:00
Joseph Hamman 6de4c5ea6b add unit tests for binder dir 2019-04-30 08:35:58 -07:00
Tim Head 9099def40a
[MRG] install notebook in its own env (#651) 
[MRG] install notebook in its own env
 2019-04-30 14:25:21 +02:00
Kirstie Whitaker 6344f39d25
Update contributing.md 2019-04-30 09:23:34 +01:00
Tim Head 34cff4d5d3
Update docs/source/contributing/contributing.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-30 09:20:47 +01:00
Kirstie Whitaker 288c3fe811
Update .github/ISSUE_TEMPLATE/feature_request.md 2019-04-30 09:18:01 +01:00