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232 Commity (main)

Autor SHA1 Wiadomość Data
Min RK 6385097d20 comment about multiple json events per chunk 2019-07-09 16:17:56 +02:00
Min RK 19e0255bb7 include full docker progress data in push events 
Most useful is probably progressDetail.progress which is the docker rendered

Example event:

```json
  "layers": {
    "25b373f5f7f1": {
      "status": "Waiting",
      "progressDetail": {},
      "id": "25b373f5f7f1"
    },
    "e9f2b5eca21e": {
      "status": "Pushing",
      "progressDetail": {
        "current": 747589632,
        "total": 758965327
      },
      "progress": "[=================================================> ]  747.6MB/759MB",
      "id": "e9f2b5eca21e"
    },
    "7753d7e0913b": {
      "status": "Pushed",
      "progressDetail": {},
      "id": "7753d7e0913b"
    },
    "ed03b06eb165": {
      "status": "Pushed",
      "progressDetail": {},
      "id": "ed03b06eb165"
    },
    "01cb88e6c1af": {
      "status": "Pushed",
      "progressDetail": {},
      "id": "01cb88e6c1af"
    },
    "adda4de99b3d": {
      "status": "Mounted from library/buildpack-deps",
      "progressDetail": {},
      "id": "adda4de99b3d"
    },
    "3a034154b7b6": {
      "status": "Mounted from library/buildpack-deps",
      "progressDetail": {},
      "id": "3a034154b7b6"
    }
```
 2019-07-02 15:05:08 +02:00
Kacper Kowalik (Xarthisius) f80fb4b39b
Handle root user case more gracefully. Fixes #696 
If user_id is root, exit only from cmdline. Raise exception if r2d was
invoked as a library.
 2019-06-28 11:46:01 -05:00
Fabien Maussion 85b0d80b16
Update target_repo_dir docstring 
See https://discourse.jupyter.org/t/users-home-in-jupyterhub/1463/3
 2019-06-27 08:58:29 +01:00
Erik Sundell e58b5c316e Merge remote-tracking branch 'upstream/master' into pipenv-support 2019-06-04 08:53:56 +02:00
Tim Head 8b004e06dc Apply auto formatting 
Apologies to anyone finding this commit via git blame or log

run the autoformatting by

    pre-commit run --all-files
 2019-06-03 21:37:25 +02:00
Tim Head dce6c1e8d7 Add basic Zenodo content provider 2019-05-29 22:27:09 +02:00
Tim Head 02ec2255d6 Use getpass instead of pwd to fetch username 
getpass is available onn windows as well as unix, whereas pwd is not
available on windows.
 2019-05-23 09:45:28 +02:00
Erik Sundell 42787d28f7 extract pipfile: add to ordered list 2019-05-12 15:57:03 +02:00
Kacper Kowalik (Xarthisius) caef6686d1
Do not try to build the image with root as the primary user 
Fixes #267 and #395
 2019-05-09 13:06:02 -05:00
Tim Head e66f0af23c
Revert "[MRG] Do not try to build the image with root as the primary user." 2019-05-09 13:14:32 +02:00
Kacper Kowalik (Xarthisius) 7d948bda8d
Do not try to build the image with root as the primary user 
Fixes #267 and #395
 2019-05-08 14:55:43 -05:00
David Anthoff 47e09b2adb Rename julia build packs 2019-02-26 08:52:44 -08:00
David Anthoff 3e9f8ec1de Rearrange inputs 2019-02-25 15:18:02 -08:00
David Anthoff c9770ee41e Split julia support into legacy and current 2019-02-25 15:18:02 -08:00
Gladys Nalvarte 7609e7f0aa Update build method in docker and legacy files 2019-02-19 10:45:48 +01:00
Gladys Nalvarte 5bf2eadcf8 Exposes CPU limit 2019-02-15 14:57:58 +01:00
Yuvi Panda 9eb78c34ab
Merge pull request #534 from betatim/test-test-test 
[MRG] Add tests for port mapping conversion
 2018-12-22 10:46:16 -08:00
Tim Head 7067663763 Add tests for port mapping conversion 2018-12-21 15:58:56 +01:00
Tim Head e7018d7ca5 Add caching of already built repositories 
Add tests for image caching

Adjust tests and main app for cached builds

Remove obsolete command-line handling

Remove print statement from test

Fix subdirectory handling

Put back exception instead of sys.exit()
 2018-12-21 11:20:51 +01:00
yuvipanda 21154d3b86 Use REPO_DIR rather than REPO_PATH 
https://github.com/jupyter/repo2docker/pull/507#issuecomment-448184651
is a good justification
 2018-12-18 11:50:35 -08:00
yuvipanda 7f72a02108 Explicitly specify log message for docker build failures 2018-12-18 11:50:30 -08:00
yuvipanda 4858f42d7f Only set REPO_PATH if explicitly passed in 
Expanding env vars through ARG and ENV is too confusing
to get right.
 2018-12-18 11:50:24 -08:00
yuvipanda 8b26bbe4e0 Allow setting REPO_PATH from commandline 2018-12-18 11:50:24 -08:00
James Bourbeau 929deaceb4 Remove f-strings 2018-12-18 08:57:53 -06:00
Min RK 22de9f40d0 get unittests passing again 
fix some relative paths, temporary dirs, etc.
 2018-12-17 13:11:45 +01:00
yuvipanda 8f56061e69 Don't call sys.exit from inside the class 
Instead, we raise exceptions that can be caught and
handled by calling code instead
 2018-12-14 13:15:33 -08:00
yuvipanda a0ad3f92e3 Rename 'build' to 'dry_run' 
A better description
 2018-12-14 13:15:33 -08:00
yuvipanda ac700c49be Split 'build' function out of start 2018-12-14 13:15:33 -08:00
yuvipanda cd04da56fc Move cleanup_checkout automatic determination to main() 
This is automaticaly determined only from commandline args,
so it should be in __main__
 2018-12-14 13:15:33 -08:00
yuvipanda e1ead75302 Move argument parsing out of Repo2Docker class 
Argument parsing should only be used when calling from
the command line, and not be deeply tied into the class
itself. This makes it easier for folks to just set
traitlets on an empty class and start it, without having to
deal with passing arguments.

This breaks how people might already be using Repo2Docker as
a library, so should not be part of 0.7
 2018-12-14 13:15:33 -08:00
James Bourbeau db00d4982c Use "local" label for local directory 2018-12-13 17:12:09 -06:00
James Bourbeau 2448730b75 Refactor test to use mock 2018-12-13 16:40:39 -06:00
James Bourbeau 99b1e7548a Update test_labels.py 2018-12-13 12:43:45 -06:00
James Bourbeau 624ad94073 Remove getattr usage 2018-12-13 11:09:50 -06:00
James Bourbeau 2e31e6e80e Add Dockerfile repo2docker labels 2018-12-12 22:05:06 -06:00
Tim Head 19d7c165d1
Merge pull request #482 from yuvipanda/push-log 
Log a 'success' message when push is complete
 2018-12-12 08:35:33 +01:00
Tim Head 69cd760e07
Merge pull request #494 from yuvipanda/util-tests 
Add unit tests for repo2docker/utils.py
 2018-12-11 13:05:08 +01:00
Tim Head 153765aa70
Add shutil import 2018-12-11 10:54:06 +01:00
yuvipanda ee9b150ef8 Remove maybe_cleanup util function 
It was used in exactly one place, and could be inlined with
minimal loss of clarity
 2018-12-10 23:13:46 -08:00
yuvipanda b4dbc9852e Pass cache_from through to build 
Got lost in a merge
 2018-12-10 11:43:54 -08:00
yuvipanda 3b0b77259f Inject docker.APIClient into methods that need them 
- Creating a new client with 'auto' version causes repeated
  unnecessary network requests to discover version of docker daemon.
- Testing is easier this way, since we can inject a mocked docker
  client more easily
 2018-12-10 11:18:01 -08:00
yuvipanda 3b515aa5f1 Merge branch 'master' into cache-from 
Merges in this revert: https://github.com/jupyter/repo2docker/pull/481
 2018-12-10 11:13:36 -08:00
yuvipanda e8a352781b Log a 'success' message when push is complete 2018-12-05 12:09:47 -08:00
Yuvi Panda aeec658149
Revert "[MRG] Start reusing existing docker images if content hasn't changed" 2018-12-05 11:51:22 -08:00
yuvipanda 89665ea910 Use --cache-from as arg name to match docker build 2018-12-05 11:11:55 -08:00
yuvipanda f5ced79d2c Add traitlet for reuse_layers_from 
More accurate name in our context
 2018-12-05 11:11:27 -08:00
yuvipanda 1dacdd4c46 Allow specifying images to reuse cache from 
This lets us explicitly specify images that repo2docker
should try to re-use cached layers from. Docker normally only
looks for layers from images that were *built* locally - if
we want it to look in images that were *pulled* from a registry,
we need to specify it here.
 2018-12-05 11:10:50 -08:00
Yuvi Panda 8c9f08cd1e
Merge pull request #461 from betatim/caching-builds 
[MRG] Start reusing existing docker images if content hasn't changed
 2018-12-04 14:57:56 -08:00
Tim Head 2e7a5d9536 Tweak docstring to make it more understandable 2018-11-16 22:24:31 +01:00
Tim Head 39c2ae276b Start reusing existing docker images if content hasn't changed 
Content providers can specify a "content ID" which is used to identify
versions of the content. The ID is used in the docker image name and if
we find an existing image for a given content ID the build step is
skipped.
 2018-11-04 13:23:04 +01:00
Chris Ostrouchov 1e3630cc10
Feature: Adding nix support for repo2docker 
test url: https://gitlab.com/costrouc/nix-binder-example
 2018-10-17 16:32:40 -04:00
Tim Head b1dcbbe996 Adjust sub-directory tests after changing CWD behaviour 2018-10-16 13:46:00 +02:00
Tim Head df7251dff6 Add context manager to change working dir 
The context manager takes care of restoring the current working
directory when we are done. This is useful when the directory we set as
working directory stops existing.
 2018-10-16 13:29:59 +02:00
Tim Head 4e1eff5f1b Switch repository used to test sub-directory support 
Using a repository that contains invlid instructions in the root of the
repository so that the test for subdirectory support will fail if
repo2docker doesn't actually switch into the requested sub-directory.
 2018-10-16 13:28:08 +02:00
Tim Head 05bdc12651 Expand comments and doc strings 2018-10-16 09:46:17 +02:00
Tim Head 98d46957f1 Expand comment about using a local directory as checkout and source 2018-10-16 08:04:13 +02:00
Tim Head c7dc5e1841 Remove explicit passing of logger instance 2018-10-16 08:04:13 +02:00
Tim Head e5c7fdd341 Use the local content provider 
This let's us remove some special casing around local directories from
the build process.
 2018-10-16 08:04:13 +02:00
Tim Head 866dd4f800 Start using content providers 2018-10-16 08:04:13 +02:00
Derek Ludwig 2d2738b6db Merge remote-tracking branch 'upstream/master' 2018-10-15 10:21:41 -07:00
Evert Rol e9a31df758 Add an edit-mode option 
This adds an option to run from a local repository in edit mode, where
changes in a running Docker container (for example, through a
notebook) are reflected in the local repository.

Implements the feature suggested in #357
 2018-10-05 14:08:51 +02:00
Evert Rol fca93270c9 Speed up cloning by using a depth of 1 if there is no refspec 
To speed up cloning a repository, a shallow clone containing just the
last commit can be made, but *only* if no refspec is provided.
 2018-10-01 15:51:24 +02:00
Derek Ludwig 39cf2411f9 Add error checking for subdir 2018-09-24 15:45:38 -07:00
Derek Ludwig da5e84472a Subdir support 2018-09-12 14:43:36 -07:00
Min RK 784bbff709
Merge pull request #358 from GladysNalvarte/connect_url 
Specify custom_connect_url argument
 2018-08-01 15:08:52 +02:00
Gladys Nalvarte 4587702119 Include corrections in app and test_connect_url files 2018-08-01 14:21:15 +02:00
Gladys Nalvarte 4c0cb69b80 Uses jupyter/notebook option to pass explicit hostname 2018-07-31 11:28:20 +02:00
Gladys Nalvarte 1512a6835a Explicit hostname supplied to the container 2018-07-20 11:45:01 +02:00
Vanessa Sochat 21f698c1b7
adding note to future developers about why version is checked first 2018-07-16 06:47:59 -07:00
Vanessa Sochat 80d7ec9ff3
removing extra blank lines 2018-07-16 06:46:53 -07:00
Vanessa Sochat a87f9520f1
adding version argument 2018-07-16 06:05:43 -07:00
Min RK 8075c5bf10
Merge pull request #343 from GladysNalvarte/split-docker-image 
Test that images can start notebook servers in all the builders
 2018-07-04 15:15:53 +02:00
Gladys Nalvarte 89686833c0 Updated app.py to make sure that images can start notebook servers 
Includes an update of conftest.py file to check that the container
is running with jupyter notebook in all the builders.
 2018-07-03 10:55:31 +02:00
Chris Holdgraf 544b1ba039 improving ref checker 2018-06-27 11:35:17 -07:00
Chris Holdgraf 728fb9707e adding a ref checker util 2018-06-27 09:25:07 -07:00
Chris Holdgraf 8beb5e07bc checking for origin/ explicitly 2018-06-27 08:30:10 -07:00
Chris Holdgraf b1f504c480 Merge branch 'docs' of https://github.com/choldgraf/repo2docker into docs 2018-06-27 08:26:01 -07:00
Chris Holdgraf c035dd22d4 auto-cleaning refs and updating tests for this 2018-06-27 08:25:05 -07:00
J. Forde e1d47df30e fixing conflict 2018-06-26 15:54:31 -07:00
Min RK 8adc402a04 Split run_image into two steps 
for easier testing of image-running logic
 2018-06-15 13:08:20 +02:00
Min RK 91fdfb4c29 prefer R to conda 
allows mixing conda and R because R inherits from Python (and thereby conda)
 2018-05-23 15:52:08 +02:00
Chris Holdgraf 8c22e42ee4 adding test and more informative error 2018-04-24 16:51:39 -07:00
Chris Holdgraf e4b680de3f adding docs about ref 2018-04-23 14:30:39 -07:00
Min RK 6b15b01fbd inherit PythonBuildPack from conda buildpack 
- sets up base env with conda
- installs packages with pip
- eliminates duplicate frozen envs for pip
- py3/py2 split happens in one class, not separate classes
 2018-04-16 10:56:39 +02:00
Carol Willing 245e7d1995 update validation logic error message and docstring 2018-03-15 12:28:11 -07:00
Carol Willing c231531f72 add yuvipanda text suggestions 2018-03-15 12:14:34 -07:00
Carol Willing 5b73968b1c add docstrings and minor style edits 2018-03-15 12:14:33 -07:00
Carol Willing 9b25188928 organize imports 2018-03-15 12:12:44 -07:00
Min RK c857f438b3 add appendix 
supports adding arbitrary build steps to the end of Dockerfile
 2018-02-14 11:34:10 +01:00
Yuvi Panda 4e174313f0
Merge pull request #229 from minrk/memtest 
instantiate Repo2Docker to run tests
 2018-02-12 11:24:10 -08:00
Min RK 3ab4503f7c clone recursively 
ensures submodules, if any, are included
 2018-02-12 13:16:06 +01:00
Min RK c164ef42b3 avoid calling sys.exit on success 2018-02-09 16:48:26 +01:00
Min RK 69db8f0ecb allow passing argv to repo2docker.initialize 
matching existing Applications
 2018-02-09 16:48:26 +01:00
Min RK 1ffec7ded6 do not reuse BuildPack instances 
rather than instantiating all buildpacks ahead of time, only instantiate as needed.

Makes it clear that a given BuildPack should only perform a single build
and a new BuildPack should be created for a subsequent build.
 2018-02-09 13:14:34 +01:00
yuvipanda e2099dbc97 Add basic R + IRKernel + RStudio support 
This sets up R + RStudio + IRKernel for a repository that contains:

 1. A `runtime.txt` file with the text:

	r-<year>-<month>-<date>

	Where 'year', 'month' and 'date' refer to a specific
	date snapshot of https://mran.microsoft.com/timemachine
	from which libraries are to be installed.

 2. An optional `install.R` file that will be executed at build time,
	and can be used for installing packages from both MRAN and GitHub.

It currently sets up R from the ubuntu repository being used. This
is unideal, and we should investigate other solutions!

Fixes #24
 2018-02-02 09:25:19 -08:00
yuvipanda 398c82ee59 Add JuliaBuildPack to list of buildpacks 2018-02-01 15:55:58 -08:00
yuvipanda e3bf8a16c6 Remove usage of LoggingConfigurable in BuildPack 2018-02-01 04:27:15 -08:00
yuvipanda 4d19924180 Use inheritance to define composed buildpacks 
- This is much cleaner to understand than traitlets
- Remove 'name' and 'component' traitlets
 2018-02-01 04:23:34 -08:00
Mukundan Sundararajan 515db356bf Added checks to gracefully handle docker connect errors 
Print actual error message on Docker client init errors
 2018-01-11 17:43:29 -08:00