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343 Commity (main)

Autor SHA1 Wiadomość Data
Chris Holdgraf af42cd0dea updating config files to avoid links 2019-11-27 10:56:27 -08:00
Chris Holdgraf 4045cabb73 howto index explanation 2019-11-27 09:49:46 -08:00
Chris Holdgraf 3115a37c63 updating theme to pandas sphinx 2019-11-26 18:12:28 -08:00
Ariel Rokem b1fbcdd698
DOC: Fixes link rendering 2019-11-08 04:33:42 -08:00
David Brochart 56e6c116f3 Add test 2019-11-05 18:01:06 +01:00
David Brochart e355b1cf2d Add change description 2019-11-05 15:20:12 +01:00
Daniel Nüst 5c43a54c41 add Dataverse support to changelog and mention in docs 2019-09-18 09:11:17 +02:00
Tim Head bfbec349c2
[MRG] Add support for installing different versions of R (#772) 
[MRG] Add support for installing different versions of R
 2019-09-18 08:15:11 +02:00
Daniel Nüst 15e8e9ccfb Add changelog entry for #788 2019-09-12 08:27:29 +02:00
Tim Head e33d5f86ca
[MRG] Add Figshare content provider (#788) 
[MRG] Add Figshare content provider
 2019-09-11 22:17:39 +02:00
Tim Head efab51b314 Update R version documentation 2019-09-09 19:06:22 +02:00
Daniel Nüst 5876439ea7 add documentation how to compare Dockerfiles created between current and oder version of r2d 2019-09-08 21:22:37 +02:00
Daniel Nüst 28261bed52 add docs about building docs 2019-09-08 21:22:37 +02:00
Daniel Nüst 0e4029bb8d add Figshare content provider 
moving common functions to a DoiProvider
 2019-09-08 14:51:17 +02:00
Aart Goossens b4d48a853c
Tiny typo in docs/source/index.rst 2019-08-07 18:02:21 +02:00
Tim Head 7e4b1bd34d Update Changelog 2019-08-07 09:19:55 +02:00
Scott Henderson 955e422101 clarify application of environment.yml 2019-07-29 17:23:09 +00:00
Minh Hoang 9c29cc022d Missing punctuation 2019-07-10 09:57:12 -07:00
Minh Hoang ac952c157e Update changelog 2019-07-10 09:56:00 -07:00
Tim Head 6e93cb06a4
Merge pull request #649 from consideRatio/pipenv-support 
[MRG/REVIEW] Support Pipfile / Pipfile.lock with pipenv
 2019-06-26 07:26:35 +02:00
John aa3de0c937 updated link for the community edition of docker 2019-06-25 10:42:47 +02:00
Erik Sundell 1bc0a6b206 Pipfile changelog entry 2019-06-24 08:34:22 +02:00
Erik Sundell 6ec9a15037 Iterate on Pipfile documentation 2019-06-24 08:19:01 +02:00
Erik Sundell e58b5c316e Merge remote-tracking branch 'upstream/master' into pipenv-support 2019-06-04 08:53:56 +02:00
Tim Head 91fed12e87 Add documentation for installing and using black 2019-06-03 21:37:25 +02:00
Tim Head c96cadafad Add basic documentation on Zenodo content provider 2019-05-29 22:27:09 +02:00
Chris Holdgraf 5c33eb08c8
Update docs/source/architecture.md 2019-05-29 10:45:59 -07:00
Chris Holdgraf be144374bc
Update docs/source/architecture.md 2019-05-28 08:37:25 -07:00
Chris Holdgraf 24c2d6193d
Update docs/source/architecture.md 2019-05-28 08:37:13 -07:00
Chris Holdgraf 90a59b233f
Update docs/source/architecture.md 
Co-Authored-By: Tim Head <betatim@gmail.com>
 2019-05-27 21:34:43 -07:00
Chris Holdgraf dbaec44517 contentprovider 2019-05-25 17:51:57 -07:00
Tim Head 5303010d0e Drop support for Python 3.4 2019-05-21 22:10:55 +02:00
Erik Sundell 2b0aa99d84 Merge remote-tracking branch 'upstream/master' into pipenv-support 2019-05-12 15:44:10 +02:00
Kacper Kowalik (Xarthisius) caef6686d1
Do not try to build the image with root as the primary user 
Fixes #267 and #395
 2019-05-09 13:06:02 -05:00
Tim Head e66f0af23c
Revert "[MRG] Do not try to build the image with root as the primary user." 2019-05-09 13:14:32 +02:00
Kacper Kowalik (Xarthisius) 7d948bda8d
Do not try to build the image with root as the primary user 
Fixes #267 and #395
 2019-05-08 14:55:43 -05:00
Tim Head d674eceeba
[MRG] release info updates (#668) 
[MRG] release info updates
 2019-05-06 00:20:20 +02:00
Chris Holdgraf 56c1160d9a bumping release date 2019-05-05 11:23:12 -07:00
Chris Holdgraf 63da4c2f36
Merge pull request #664 from betatim/update-changelog-v090 
[MRG] Update change log in preparation for releasing v0.9.0
 2019-05-05 11:21:49 -07:00
Chris Holdgraf a3a4eba89c
Update docs/source/contributing/tasks.md 2019-05-05 10:28:50 -07:00
Tim Head 19cb905102 Mention the invention of the REES in the change log 2019-05-05 15:09:59 +02:00
Tim Head 56708c662e
specification info page (#662) 
specification info page
 2019-05-05 15:06:59 +02:00
Tim Head e098d23463 Update change log in preparation for releasing v0.9.0 2019-05-05 15:00:09 +02:00
Chris Holdgraf 00bbde26bb release info 2019-05-04 15:03:17 -07:00
Chris Holdgraf f86a06d4ba tim comments in specification doc 2019-05-04 10:57:27 -07:00
Chris Holdgraf 1c66925090 updates per comments 2019-05-03 09:38:07 -07:00
Wayne's Bioinformatics Code Portal 21c730298e
tweak language to make clear `exec "$@"` works 
originally it was: "The last line must be ``exec "$@"`` equivalent." Seemed open to interpretation as I needed to deduce what the equivalent of that would be here. I think adding 'or' before equivalent shows that will work, but I assume other options exist? Or why note say  "The last line must be ``exec "$@"``"?
 2019-05-03 11:14:25 -04:00
Chris Holdgraf b20438bd59 specification info 2019-05-02 16:01:37 -07:00
Tim Head e35277410a
[MRG] Update contributing guidelines and issue templates (#655) 
[MRG] Update contributing guidelines and issue templates
 2019-04-30 21:40:15 +02:00
Kirstie Whitaker a6911a10a0
Update docs/source/contributing/contributing.md 2019-04-30 20:11:17 +01:00
Joseph Hamman 9ded2b5ee6 add note to changelog 2019-04-30 10:06:24 -07:00
Tim Head 5e67e3c743
Support .binder directory (#653) 
Support .binder directory
 2019-04-30 18:29:38 +02:00
Kirstie Whitaker 6344f39d25
Update contributing.md 2019-04-30 09:23:34 +01:00
Tim Head 34cff4d5d3
Update docs/source/contributing/contributing.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-30 09:20:47 +01:00
Chris Holdgraf c25e6bc2ae
Update docs/source/contributing/contributing.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-30 09:13:32 +01:00
Joseph Hamman 3c0ceaacc2 clarify that only one of binder and .binder can be used at once 2019-04-28 20:28:09 -07:00
Kirstie Whitaker 6c43fb927a Extend the points about feature requests & bug reports 2019-04-28 19:58:55 +01:00
Kirstie Whitaker 5a7add7929 Update process and guidelines for making contribution 2019-04-28 19:41:33 +01:00
Kirstie Whitaker a27420e29f Add types of contributions section 2019-04-28 19:11:32 +01:00
Joseph Hamman c230c70f4e support for .binder directory 2019-04-27 17:01:20 -07:00
Min RK 2acf0974c3 miniconda is 4.6.14 2019-04-26 16:25:41 +02:00
Min RK 109793bffd conda 4.6.14 2019-04-26 16:09:00 +02:00
Min RK 1f7d91af5f Merge remote-tracking branch 'jhamman/bump_conda_ver' into conda-env 2019-04-26 16:05:38 +02:00
Erik Sundell 5df7a3628c Document pipfile(.lock) as an option 2019-04-21 00:30:11 +02:00
Tim Head 843b7a5e30 Unpin pip again 2019-04-16 21:49:37 +02:00
Chris Holdgraf 2db2f4683c
mentioning s2i in faq 2019-04-12 11:46:13 -07:00
Lindsey Heagy f936cf566c
Merge pull request #640 from betatim/fix-spinx-deprecation 
[MRG] Fix sphinx deprecation for recommonmark
 2019-04-09 18:34:23 -07:00
Tim Head f4e3754434 Update change log 2019-04-08 16:43:49 +02:00
Tim Head cbb375e156 Black-ify the sphinx configuration code 2019-04-08 07:52:25 +02:00
Tim Head da9f8de0e3 Update recommonmark ocnfiguration 
In new versions of SPhinx the way we were configuring the recommonmark
extension has become deprecated. This switches us to the new way of
configuring it.
 2019-04-08 07:51:30 +02:00
Joseph Hamman f9620edd8e freeze versions 2019-04-04 13:35:12 -07:00
Joseph Hamman bf3d0c133c fallback to 4.6.10 2019-04-04 12:29:34 -07:00
Joseph Hamman a3d4f95de0 changelog addition 2019-04-04 11:54:33 -07:00
Min RK 8d8c21e55e
Merge pull request #631 from jtpio/docs-default-py37 
[MRG] Python 3.7 as the default in the docs
 2019-03-29 16:01:44 +01:00
Jeremy Tuloup 177ee4b650
Python 3.7 as default in the docs 2019-03-27 21:54:50 +01:00
David Anthoff 65d4e6c034 Update changelog 2019-03-21 12:55:19 -07:00
David Anthoff ae86baaa52 Use NB_PYTHON_PREFIX for kernel install path 2019-03-21 09:07:12 -07:00
David Anthoff 61ece15c75 Update changelog 2019-03-13 09:18:23 -07:00
Fredrik Ekre 95a59026ae Julia: Update links to Pkg.jl documentation and change 
Compat to [compat] since that is how the section is
usually referred to.
 2019-03-13 09:26:57 +01:00
Athanasia Monika Mowinckel 8ed4bf32d4
moved the shiny faq below the note 2019-03-08 21:41:36 +01:00
Athanasia Monika Mowinckel 736c3dace9
added some debug for R shiny 2019-03-08 19:49:21 +01:00
Tim Head 63ac63f3e7
Merge pull request #608 from agitter/patch-1 
Expand environment.yml config notes
 2019-03-07 22:29:44 +01:00
Anthony Gitter 14754dc8d3
Minor rephrasing 2019-03-06 10:49:48 -06:00
Tim Head 5072b8e609
Update docs/source/config_files.rst 
Co-Authored-By: agitter <agitter@users.noreply.github.com>
 2019-03-06 10:49:04 -06:00
Tim Head a9dd69a3ce
Merge pull request #595 from davidanthoff/reorg-julia 
[MRG+1] Split julia support into pre julia 1.0 and post julia 1.0
 2019-03-06 13:18:21 +01:00
David Anthoff e845db33da Update julia documentation 2019-03-05 21:09:56 -08:00
Nathan Daly f6074aaa3f
Update docs/source/faq.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-05 17:56:51 -08:00
Nathan Daly 4a882f445a
Update docs/source/config_files.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-05 17:56:22 -08:00
Anthony Gitter bacf84bbcd
Expand environment.yml config notes 2019-03-05 19:24:19 -06:00
David Anthoff 9600d4b438 Fix changelog formatting 2019-03-05 08:45:25 -08:00
Tim Head 07bd9be43c
Update docs/source/changelog.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-05 08:28:21 -08:00
Tim Head c7d62a3387 Change contributor guide language to remove the word "code" 2019-03-05 07:46:54 +01:00
David Anthoff 2f8d43d5f0 Update changelog 2019-03-04 21:32:53 -08:00
David Anthoff 3ba4c5766b Merge branch 'master' into reorg-julia 2019-03-04 21:31:12 -08:00
Tim Head 6689ee3b97
Update docs/source/faq.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-04 21:30:17 -08:00
Tim Head 73a1a6da61
Update docs/source/faq.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-04 21:29:54 -08:00
Tim Head 1427cd1047 Reopen change log 2019-03-04 19:50:37 +01:00
David Anthoff 5790933d8c Update documentation with new julia support 2019-03-02 17:27:58 -08:00
Tim Head a4063e3d8d Add FAQ entry and Howto on exporting conda envs 2019-03-02 08:40:35 +01:00
Tim Head ed514946ed Fix release date of 0.8.0 2019-02-21 14:49:09 +01:00
Tim Head af2cc83aa7
Merge pull request #577 from betatim/releasing-0.7.1 
[MRG] Update ChangeLog to release 0.8.0
 2019-02-21 12:09:13 +01:00
Tim Head 35d1cac0bd Update ChangeLog to the v0.8.0 release of repo2docker. 2019-02-21 11:43:04 +01:00
Tim Head 7fa922a612 Fix up double label trouble in the config file docs 2019-02-21 11:34:32 +01:00
Tim Head 397695bbaa
Merge pull request #539 from yuvipanda/v3.7 
Bump default python version to 3.7
 2019-02-21 11:06:03 +01:00
Min RK de3658442b update docs for pinning Python 
- clarify that runtime.txt is only for env files that don't support runtime specification
- specify default version of Python and when it changed
- more links to pinning docs
 2019-02-21 10:20:56 +01:00
Min RK 2baf31dc8a add default_python replacement to sphinx 
and get docs version from the package so it doesn't get out of date
 2019-02-21 10:07:54 +01:00
Tim Head bc5a53d977 Update documentation with more cross references 2019-02-21 08:38:38 +01:00
Tim Head 349f801aae
install: don't rely on git, download zip file directly 
Co-Authored-By: haraldschilly <harald.schilly@gmail.com>
 2019-02-20 15:19:57 +01:00
Harald Schilly 74cb6dbde7
install: one-liner to install most recent upstream code 2019-02-20 12:37:48 +01:00
Yuvi Panda e3d82f8a7c
Merge pull request #568 from choldgraf/docsupdate 
updating interfaces page and adding jupyterlab workspaces page
 2019-01-30 11:36:35 -08:00
Lindsey Heagy d8ccc8085d
Update conf.py 
update copyright year in the docs
 2019-01-29 22:06:14 -08:00
Chris Holdgraf 112b718758 lowercase n 2019-01-29 14:12:19 -08:00
Lindsey Heagy 01fedb2b80
Update docs/source/howto/lab_workspaces.rst 
Co-Authored-By: choldgraf <choldgraf@gmail.com>
 2019-01-29 14:10:21 -08:00
Chris Holdgraf 88042fff84 updating interfaces page 2019-01-28 20:09:47 -08:00
Craig Willis 0b368773e5 Fixed sphinx error finding changelog 2019-01-09 14:20:13 -06:00
Tim Head 8d2617479a
Merge pull request #526 from minrk/annotated-tags 
Add tag command snippet
 2018-12-20 21:08:52 +01:00
James Bourbeau a9e9399e06 Minor howto doc fixes 2018-12-20 10:16:37 -06:00
Tim Head 27a5243072
Update docs/source/contributing/tasks.md 
Co-Authored-By: minrk <benjaminrk@gmail.com>
 2018-12-20 14:16:07 +01:00
Min RK 8d4f0242f9 Add tag command snippet 
make sure it's an annotated tag
 2018-12-19 13:55:00 +01:00
James Bourbeau 9421c73117 Add CLI API docs 2018-12-17 13:06:32 -06:00
James Bourbeau 5f65cd0858 Use relative link to changelog [skip travis] 2018-12-17 08:49:56 -06:00
James Bourbeau 2f00a1444c Update new contributing guide changelog ref [skip travis] 2018-12-17 08:46:21 -06:00
James Bourbeau d78125b91b Merge remote-tracking branch 'upstream/master' into move-changelog 2018-12-17 08:37:38 -06:00
James Bourbeau 4f3d5de778 Add GitHub users to extlinks 2018-12-17 08:36:29 -06:00
Tim Head 3f9f4918c5 Fix typos and syntax errors in the documentation 2018-12-15 08:40:27 +01:00
James Bourbeau 454782426e Move changelog to docs 2018-12-14 14:20:47 -06:00
Tim Head de348d548c Update roadmap 2018-12-10 11:39:15 +01:00
Chris Holdgraf cfd3dbdb5f removing note that env.yml is needed for julia 2018-11-26 10:21:02 -06:00
Carol Willing 310e2b8512
Merge pull request #463 from betatim/add-logo 
[MRG] Add and use new logo
 2018-11-12 14:07:30 -08:00
Yuvi Panda c489f54a05
Merge pull request #448 from betatim/nix-experiment 
[MRG] Switch to BaseImage for nix build pack
 2018-11-12 13:56:30 -08:00
Tania Allard b924d7227d Add docs: how to use the Pipfile and to update this too 2018-11-11 11:32:22 +00:00
Carol Willing dbd1f33b3d
Merge pull request #465 from betatim/roadmaping 
[MRG] Add a first roadmap
 2018-11-09 10:08:27 -08:00
Tim Head e239c494c3 Add link to binder-examples repo for nix 2018-11-09 15:23:01 +01:00
Tim Head 58cbe1797d
Merge pull request #457 from nuest/stencila 
Updates for Stencila
 2018-11-09 13:56:23 +01:00
Tim Head c05f30d13c Introduce extra level of headers in the roadmap 2018-11-09 13:46:18 +01:00
Tim Head c924f5fa48 Update documentation on the nix build pack 2018-11-09 08:12:56 +01:00
Tim Head 3a4e599ee9 Incorporate feedback on the roadmap 
Improves naming of sections and the description of what each step and the
process around the roadmap looks like.
 2018-11-08 19:01:31 +01:00
Tim Head b9dba98c65 Add a first roadmap 2018-11-06 23:15:50 +01:00
nuest e576c03446 describe more complex detection mechanism used for stencila in dev docs 2018-11-06 20:17:19 +01:00
Tim Head 26fb8a730e Add SVG logo 2018-11-05 17:33:23 +01:00
Tim Head 5cdd0ee371
Merge pull request #407 from costrouc/costrouc/nix-buildpack 
Adding support for nix buildpack in repo2docker
 2018-11-05 15:27:48 +01:00
Tim Head 25c45fd8e5 Add and use new logo 2018-11-05 14:01:01 +01:00
nuest 8d9a48717a add Stencila to user interface docs 2018-10-30 15:59:42 +01:00
Tim Head a57a44391f
Fix wording in config_files.rst 
Co-Authored-By: nuest <daniel.nuest@wwu.de>
 2018-10-30 14:53:50 +01:00
nuest 6d304174da add Stencila config files to docs 2018-10-30 11:34:27 +01:00
Chris Holdgraf 057d5edbaf
clone from user repo in docs 2018-10-23 10:22:07 -07:00
Chris Holdgraf 417157fb83 moving contributing into the docs 2018-10-22 10:19:55 -07:00
Chris Holdgraf ed590002db adding back sidebars 2018-10-19 16:11:48 -07:00
Chris Holdgraf 4c50efe6ac adding circle and jupyterhub docs theme 2018-10-17 21:00:43 -07:00
Chris Ostrouchov 1e3630cc10
Feature: Adding nix support for repo2docker 
test url: https://gitlab.com/costrouc/nix-binder-example
 2018-10-17 16:32:40 -04:00