14 KiB
title |
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foldingathome |
linuxserver/foldingathome
Folding@home is a distributed computing project for simulating protein dynamics, including the process of protein folding and the movements of proteins implicated in a variety of diseases. It brings together citizen scientists who volunteer to run simulations of protein dynamics on their personal computers. Insights from this data are helping scientists to better understand biology, and providing new opportunities for developing therapeutics.
Supported Architectures
We utilise the docker manifest for multi-platform awareness. More information is available from docker here and our announcement here.
Simply pulling lscr.io/linuxserver/foldingathome:latest
should retrieve the correct image for your arch, but you can also pull specific arch images via tags.
The architectures supported by this image are:
Architecture | Available | Tag |
---|---|---|
x86-64 | ✅ | amd64-<version tag> |
arm64 | ✅ | arm64v8-<version tag> |
armhf | ❌ |
Application Setup
This image sets up the Folding@home client. The interface is available at http://your-ip:7396
.
The built-in webserver provides very basic control (ie. GPUs are only active when set to Medium
or higher). For more fine grained control of individual devices, you can use the FAHControl app on a different device and connect remotely via port 36330
(no password).
There are a couple of minor issues with the webgui:
- If you get an "ERR_EMPTY_RESPONSE" error when trying to access via IP, it's most likely due to a clash of cookies/cache. Try opening in an incgnito window.
- If you're getting a constant refresh of the window but no display of info, try a force refresh via
shft-F5
orctrl-F5
.
GPU Hardware Acceleration
Nvidia
Hardware acceleration users for Nvidia will need to install the container runtime provided by Nvidia on their host, instructions can be found here:
https://github.com/NVIDIA/nvidia-docker
We automatically add the necessary environment variable that will utilise all the features available on a GPU on the host. Once nvidia-docker is installed on your host you will need to re/create the docker container with the nvidia container runtime --runtime=nvidia
and add an environment variable -e NVIDIA_VISIBLE_DEVICES=all
(can also be set to a specific gpu's UUID, this can be discovered by running nvidia-smi --query-gpu=gpu_name,gpu_uuid --format=csv
). NVIDIA automatically mounts the GPU and drivers from your host into the foldingathome docker container.
Usage
To help you get started creating a container from this image you can either use docker-compose or the docker cli.
docker-compose (recommended, click here for more info)
---
version: "2.1"
services:
foldingathome:
image: lscr.io/linuxserver/foldingathome:latest
container_name: foldingathome
environment:
- PUID=1000
- PGID=1000
- TZ=Etc/UTC
volumes:
- /path/to/data:/config
ports:
- 7396:7396
- 36330:36330 #optional
restart: unless-stopped
docker cli (click here for more info)
docker run -d \
--name=foldingathome \
-e PUID=1000 \
-e PGID=1000 \
-e TZ=Etc/UTC \
-p 7396:7396 \
-p 36330:36330 `#optional` \
-v /path/to/data:/config \
--restart unless-stopped \
lscr.io/linuxserver/foldingathome:latest
Parameters
Containers are configured using parameters passed at runtime (such as those above). These parameters are separated by a colon and indicate <external>:<internal>
respectively. For example, -p 8080:80
would expose port 80
from inside the container to be accessible from the host's IP on port 8080
outside the container.
Ports (-p
)
Parameter | Function |
---|---|
7396 |
Folding@home web gui. |
36330 |
Optional port for connecting remotely via FAHControl app (no password). |
Environment Variables (-e
)
Env | Function |
---|---|
PUID=1000 |
for UserID - see below for explanation |
PGID=1000 |
for GroupID - see below for explanation |
TZ=Etc/UTC |
specify a timezone to use, see this list. |
Volume Mappings (-v
)
Volume | Function |
---|---|
/config |
Where Folding@home should store its database and config. |
Miscellaneous Options
Parameter | Function |
---|
Environment variables from files (Docker secrets)
You can set any environment variable from a file by using a special prepend FILE__
.
As an example:
-e FILE__MYVAR=/run/secrets/mysecretvariable
Will set the environment variable MYVAR
based on the contents of the /run/secrets/mysecretvariable
file.
Umask for running applications
For all of our images we provide the ability to override the default umask settings for services started within the containers using the optional -e UMASK=022
setting.
Keep in mind umask is not chmod it subtracts from permissions based on it's value it does not add. Please read up here before asking for support.
User / Group Identifiers
When using volumes (-v
flags), permissions issues can arise between the host OS and the container, we avoid this issue by allowing you to specify the user PUID
and group PGID
.
Ensure any volume directories on the host are owned by the same user you specify and any permissions issues will vanish like magic.
In this instance PUID=1000
and PGID=1000
, to find yours use id your_user
as below:
id your_user
Example output:
uid=1000(your_user) gid=1000(your_user) groups=1000(your_user)
Docker Mods
We publish various Docker Mods to enable additional functionality within the containers. The list of Mods available for this image (if any) as well as universal mods that can be applied to any one of our images can be accessed via the dynamic badges above.
Support Info
-
Shell access whilst the container is running:
docker exec -it foldingathome /bin/bash
-
To monitor the logs of the container in realtime:
docker logs -f foldingathome
-
Container version number:
docker inspect -f '{{ index .Config.Labels "build_version" }}' foldingathome
-
Image version number:
docker inspect -f '{{ index .Config.Labels "build_version" }}' lscr.io/linuxserver/foldingathome:latest
Updating Info
Most of our images are static, versioned, and require an image update and container recreation to update the app inside. With some exceptions (ie. nextcloud, plex), we do not recommend or support updating apps inside the container. Please consult the Application Setup section above to see if it is recommended for the image.
Below are the instructions for updating containers:
Via Docker Compose
-
Update images:
-
All images:
docker-compose pull
-
Single image:
docker-compose pull foldingathome
-
-
Update containers:
-
All containers:
docker-compose up -d
-
Single container:
docker-compose up -d foldingathome
-
-
You can also remove the old dangling images:
docker image prune
Via Docker Run
-
Update the image:
docker pull lscr.io/linuxserver/foldingathome:latest
-
Stop the running container:
docker stop foldingathome
-
Delete the container:
docker rm foldingathome
-
Recreate a new container with the same docker run parameters as instructed above (if mapped correctly to a host folder, your
/config
folder and settings will be preserved) -
You can also remove the old dangling images:
docker image prune
Via Watchtower auto-updater (only use if you don't remember the original parameters)
-
Pull the latest image at its tag and replace it with the same env variables in one run:
docker run --rm \ -v /var/run/docker.sock:/var/run/docker.sock \ containrrr/watchtower \ --run-once foldingathome
-
You can also remove the old dangling images:
docker image prune
!!! warning
We do not endorse the use of Watchtower as a solution to automated updates of existing Docker containers. In fact we generally discourage automated updates. However, this is a useful tool for one-time manual updates of containers where you have forgotten the original parameters. In the long term, we highly recommend using [Docker Compose](https://docs.linuxserver.io/general/docker-compose).
Image Update Notifications - Diun (Docker Image Update Notifier)
!!! tip
We recommend [Diun](https://crazymax.dev/diun/) for update notifications. Other tools that automatically update containers unattended are not recommended or supported.
Building locally
If you want to make local modifications to these images for development purposes or just to customize the logic:
git clone https://github.com/linuxserver/docker-foldingathome.git
cd docker-foldingathome
docker build \
--no-cache \
--pull \
-t lscr.io/linuxserver/foldingathome:latest .
The ARM variants can be built on x86_64 hardware using multiarch/qemu-user-static
docker run --rm --privileged multiarch/qemu-user-static:register --reset
Once registered you can define the dockerfile to use with -f Dockerfile.aarch64
.
Versions
- 14.12.22: - Rebase to Ubuntu Jammy, migrate to s6v3.
- 15.01.22: - Rebase to Ubuntu Focal. Add arm64v8 builds (cpu only). Increase verbosity about gpu driver permission settings.
- 09.01.21: - Add nvidia.icd.
- 14.04.20: - Add Folding@home donation links.
- 20.03.20: - Initial release.