Update documentation

_sources/map-accuracy.rst.txt

@@ -313,7 +313,11 @@ It should make the Time-SIFT processing on the downloaded example data, stopping
 
 In the destination dir, you should obtain new directories, ``0_before`` and ``1_after`` at the same level as the ``time-sift-block`` directory. These new directories contain all the results natively co-registered.
 
-You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. |image1|
+You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp
+   :alt: Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).
+   :align: center
+
 
 Your own data
 ~~~~~~~~~~~~~

cs/_sources/map-accuracy.rst.txt

@@ -313,7 +313,11 @@ It should make the Time-SIFT processing on the downloaded example data, stopping
 
 In the destination dir, you should obtain new directories, ``0_before`` and ``1_after`` at the same level as the ``time-sift-block`` directory. These new directories contain all the results natively co-registered.
 
-You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. |image1|
+You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp
+   :alt: Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).
+   :align: center
+
 
 Your own data
 ~~~~~~~~~~~~~

cs/flowchart/index.html

@@ -30,7 +30,7 @@ const load = async () => {
     const mermaids_to_add_zoom = 1 === -1 ? all_mermaids.length : 1;
     const mermaids_processed = document.querySelectorAll(".mermaid[data-processed='true']");
     if(mermaids_to_add_zoom > 0) {
-        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-f7691daa-c666-49f5-8a3f-377129d2fedb] svg");
+        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-10bbbbc7-133d-47f7-82a8-36bb6ed3f9ee] svg");
         if(all_mermaids.length !== mermaids_processed.length) {
             // try again in a sec, wait for mermaids to load
             setTimeout(load, 200);
@@ -491,7 +491,7 @@ window.addEventListener("load", load);
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Link to this heading"></a></h1>
-<pre data-zoom-id="id-f7691daa-c666-49f5-8a3f-377129d2fedb" class="mermaid">
+<pre data-zoom-id="id-10bbbbc7-133d-47f7-82a8-36bb6ed3f9ee" class="mermaid">
          flowchart  TB
 
 

cs/map-accuracy/index.html

@@ -682,7 +682,18 @@ to get example data.</p>
 </div>
 <p>It should make the Time-SIFT processing on the downloaded example data, stopping after the filtered dense clouds step.</p>
 <p>In the destination dir, you should obtain new directories, <code class="docutils literal notranslate"><span class="pre">0_before</span></code> and <code class="docutils literal notranslate"><span class="pre">1_after</span></code> at the same level as the <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code> directory. These new directories contain all the results natively co-registered.</p>
-<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. <img alt="image1" src="https://forge.inrae.fr/Denis.Feurer/timesift-odm-data-example/-/raw/main/Example.webp?ref_type=heads" /></p>
+<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp</p>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">alt<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).</p>
+</dd>
+<dt class="field-even">align<span class="colon">:</span></dt>
+<dd class="field-even"><p>center</p>
+</dd>
+</dl>
+</div></blockquote>
 <section id="your-own-data">
 <h6>Your own data<a class="headerlink" href="#your-own-data" title="Link to this heading"></a></h6>
 <p>In your dataset directory (usually <code class="docutils literal notranslate"><span class="pre">datasets</span></code>, but you can have chosen another name) you have to prepare a Time-SIFT project directory (default name : <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code>, <em>can be tuned via a parameter</em>) that contains : * <code class="docutils literal notranslate"><span class="pre">images/</span></code> : a subdirectory with all images of all epochs. This directory name is fixed as it is the one expected by ODM *

es/_sources/map-accuracy.rst.txt

@@ -313,7 +313,11 @@ It should make the Time-SIFT processing on the downloaded example data, stopping
 
 In the destination dir, you should obtain new directories, ``0_before`` and ``1_after`` at the same level as the ``time-sift-block`` directory. These new directories contain all the results natively co-registered.
 
-You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. |image1|
+You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp
+   :alt: Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).
+   :align: center
+
 
 Your own data
 ~~~~~~~~~~~~~

es/flowchart/index.html

@@ -30,7 +30,7 @@ const load = async () => {
     const mermaids_to_add_zoom = 1 === -1 ? all_mermaids.length : 1;
     const mermaids_processed = document.querySelectorAll(".mermaid[data-processed='true']");
     if(mermaids_to_add_zoom > 0) {
-        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-2e78fdea-64d1-4ebd-a1f2-632253568916] svg");
+        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-55c83196-e596-4d9d-811c-7d844354cea0] svg");
         if(all_mermaids.length !== mermaids_processed.length) {
             // try again in a sec, wait for mermaids to load
             setTimeout(load, 200);
@@ -491,7 +491,7 @@ window.addEventListener("load", load);
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Link to this heading"></a></h1>
-<pre data-zoom-id="id-2e78fdea-64d1-4ebd-a1f2-632253568916" class="mermaid">
+<pre data-zoom-id="id-55c83196-e596-4d9d-811c-7d844354cea0" class="mermaid">
          flowchart  TB
 
 

es/map-accuracy/index.html

@@ -682,7 +682,18 @@ to get example data.</p>
 </div>
 <p>It should make the Time-SIFT processing on the downloaded example data, stopping after the filtered dense clouds step.</p>
 <p>In the destination dir, you should obtain new directories, <code class="docutils literal notranslate"><span class="pre">0_before</span></code> and <code class="docutils literal notranslate"><span class="pre">1_after</span></code> at the same level as the <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code> directory. These new directories contain all the results natively co-registered.</p>
-<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. <img alt="image1" src="https://forge.inrae.fr/Denis.Feurer/timesift-odm-data-example/-/raw/main/Example.webp?ref_type=heads" /></p>
+<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp</p>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">alt<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).</p>
+</dd>
+<dt class="field-even">align<span class="colon">:</span></dt>
+<dd class="field-even"><p>center</p>
+</dd>
+</dl>
+</div></blockquote>
 <section id="your-own-data">
 <h6>Your own data<a class="headerlink" href="#your-own-data" title="Link to this heading"></a></h6>
 <p>In your dataset directory (usually <code class="docutils literal notranslate"><span class="pre">datasets</span></code>, but you can have chosen another name) you have to prepare a Time-SIFT project directory (default name : <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code>, <em>can be tuned via a parameter</em>) that contains : * <code class="docutils literal notranslate"><span class="pre">images/</span></code> : a subdirectory with all images of all epochs. This directory name is fixed as it is the one expected by ODM *

fil/_sources/map-accuracy.rst.txt

@@ -313,7 +313,11 @@ It should make the Time-SIFT processing on the downloaded example data, stopping
 
 In the destination dir, you should obtain new directories, ``0_before`` and ``1_after`` at the same level as the ``time-sift-block`` directory. These new directories contain all the results natively co-registered.
 
-You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. |image1|
+You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp
+   :alt: Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).
+   :align: center
+
 
 Your own data
 ~~~~~~~~~~~~~

fil/flowchart/index.html

@@ -29,7 +29,7 @@ const load = async () => {
     const mermaids_to_add_zoom = 1 === -1 ? all_mermaids.length : 1;
     const mermaids_processed = document.querySelectorAll(".mermaid[data-processed='true']");
     if(mermaids_to_add_zoom > 0) {
-        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-8c3c72a7-f7bb-42c6-9e4b-cee5667c4d09] svg");
+        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-199c5f2e-4959-4ddf-a067-dd9da9d5188d] svg");
         if(all_mermaids.length !== mermaids_processed.length) {
             // try again in a sec, wait for mermaids to load
             setTimeout(load, 200);
@@ -490,7 +490,7 @@ window.addEventListener("load", load);
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Link to this heading"></a></h1>
-<pre data-zoom-id="id-8c3c72a7-f7bb-42c6-9e4b-cee5667c4d09" class="mermaid">
+<pre data-zoom-id="id-199c5f2e-4959-4ddf-a067-dd9da9d5188d" class="mermaid">
          flowchart  TB
 
 

fil/map-accuracy/index.html

@@ -681,7 +681,18 @@ to get example data.</p>
 </div>
 <p>It should make the Time-SIFT processing on the downloaded example data, stopping after the filtered dense clouds step.</p>
 <p>In the destination dir, you should obtain new directories, <code class="docutils literal notranslate"><span class="pre">0_before</span></code> and <code class="docutils literal notranslate"><span class="pre">1_after</span></code> at the same level as the <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code> directory. These new directories contain all the results natively co-registered.</p>
-<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. <img alt="image1" src="https://forge.inrae.fr/Denis.Feurer/timesift-odm-data-example/-/raw/main/Example.webp?ref_type=heads" /></p>
+<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp</p>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">alt<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).</p>
+</dd>
+<dt class="field-even">align<span class="colon">:</span></dt>
+<dd class="field-even"><p>center</p>
+</dd>
+</dl>
+</div></blockquote>
 <section id="your-own-data">
 <h6>Your own data<a class="headerlink" href="#your-own-data" title="Link to this heading"></a></h6>
 <p>In your dataset directory (usually <code class="docutils literal notranslate"><span class="pre">datasets</span></code>, but you can have chosen another name) you have to prepare a Time-SIFT project directory (default name : <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code>, <em>can be tuned via a parameter</em>) that contains : * <code class="docutils literal notranslate"><span class="pre">images/</span></code> : a subdirectory with all images of all epochs. This directory name is fixed as it is the one expected by ODM *

flowchart/index.html

@@ -29,7 +29,7 @@ const load = async () => {
     const mermaids_to_add_zoom = 1 === -1 ? all_mermaids.length : 1;
     const mermaids_processed = document.querySelectorAll(".mermaid[data-processed='true']");
     if(mermaids_to_add_zoom > 0) {
-        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-31291655-5bde-471d-88fe-21720d3e79ae] svg");
+        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-a9dde58a-672b-4f70-9a27-8570b2d2cf9f] svg");
         if(all_mermaids.length !== mermaids_processed.length) {
             // try again in a sec, wait for mermaids to load
             setTimeout(load, 200);
@@ -490,7 +490,7 @@ window.addEventListener("load", load);
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Link to this heading"></a></h1>
-<pre data-zoom-id="id-31291655-5bde-471d-88fe-21720d3e79ae" class="mermaid">
+<pre data-zoom-id="id-a9dde58a-672b-4f70-9a27-8570b2d2cf9f" class="mermaid">
          flowchart  TB
 
 

fr/_sources/map-accuracy.rst.txt

@@ -313,7 +313,11 @@ It should make the Time-SIFT processing on the downloaded example data, stopping
 
 In the destination dir, you should obtain new directories, ``0_before`` and ``1_after`` at the same level as the ``time-sift-block`` directory. These new directories contain all the results natively co-registered.
 
-You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. |image1|
+You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp
+   :alt: Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).
+   :align: center
+
 
 Your own data
 ~~~~~~~~~~~~~

fr/flowchart/index.html

@@ -30,7 +30,7 @@ const load = async () => {
     const mermaids_to_add_zoom = 1 === -1 ? all_mermaids.length : 1;
     const mermaids_processed = document.querySelectorAll(".mermaid[data-processed='true']");
     if(mermaids_to_add_zoom > 0) {
-        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-d555a7c5-b855-47ed-8f3e-392876c0625c] svg");
+        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-dd5c0cbf-b3c1-4276-9ca7-91afd4485bad] svg");
         if(all_mermaids.length !== mermaids_processed.length) {
             // try again in a sec, wait for mermaids to load
             setTimeout(load, 200);
@@ -491,7 +491,7 @@ window.addEventListener("load", load);
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Lien vers cette rubrique"></a></h1>
-<pre data-zoom-id="id-d555a7c5-b855-47ed-8f3e-392876c0625c" class="mermaid">
+<pre data-zoom-id="id-dd5c0cbf-b3c1-4276-9ca7-91afd4485bad" class="mermaid">
          flowchart  TB
 
 

fr/map-accuracy/index.html

@@ -682,7 +682,18 @@ to get example data.</p>
 </div>
 <p>It should make the Time-SIFT processing on the downloaded example data, stopping after the filtered dense clouds step.</p>
 <p>In the destination dir, you should obtain new directories, <code class="docutils literal notranslate"><span class="pre">0_before</span></code> and <code class="docutils literal notranslate"><span class="pre">1_after</span></code> at the same level as the <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code> directory. These new directories contain all the results natively co-registered.</p>
-<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. <img alt="image1" src="https://forge.inrae.fr/Denis.Feurer/timesift-odm-data-example/-/raw/main/Example.webp?ref_type=heads" /></p>
+<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp</p>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">alt<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).</p>
+</dd>
+<dt class="field-even">align<span class="colon">:</span></dt>
+<dd class="field-even"><p>center</p>
+</dd>
+</dl>
+</div></blockquote>
 <section id="your-own-data">
 <h6>Your own data<a class="headerlink" href="#your-own-data" title="Lien vers cette rubrique"></a></h6>
 <p>In your dataset directory (usually <code class="docutils literal notranslate"><span class="pre">datasets</span></code>, but you can have chosen another name) you have to prepare a Time-SIFT project directory (default name : <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code>, <em>can be tuned via a parameter</em>) that contains : * <code class="docutils literal notranslate"><span class="pre">images/</span></code> : a subdirectory with all images of all epochs. This directory name is fixed as it is the one expected by ODM *

id/_sources/map-accuracy.rst.txt

@@ -313,7 +313,11 @@ It should make the Time-SIFT processing on the downloaded example data, stopping
 
 In the destination dir, you should obtain new directories, ``0_before`` and ``1_after`` at the same level as the ``time-sift-block`` directory. These new directories contain all the results natively co-registered.
 
-You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. |image1|
+You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp
+   :alt: Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).
+   :align: center
+
 
 Your own data
 ~~~~~~~~~~~~~

id/flowchart/index.html

@@ -30,7 +30,7 @@ const load = async () => {
     const mermaids_to_add_zoom = 1 === -1 ? all_mermaids.length : 1;
     const mermaids_processed = document.querySelectorAll(".mermaid[data-processed='true']");
     if(mermaids_to_add_zoom > 0) {
-        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-4110da54-ae57-4c07-90d0-f798635daae1] svg");
+        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-40e53a49-14b3-483d-b659-454c68af78f5] svg");
         if(all_mermaids.length !== mermaids_processed.length) {
             // try again in a sec, wait for mermaids to load
             setTimeout(load, 200);
@@ -491,7 +491,7 @@ window.addEventListener("load", load);
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Link to this heading"></a></h1>
-<pre data-zoom-id="id-4110da54-ae57-4c07-90d0-f798635daae1" class="mermaid">
+<pre data-zoom-id="id-40e53a49-14b3-483d-b659-454c68af78f5" class="mermaid">
          flowchart  TB
 
 

id/map-accuracy/index.html

@@ -682,7 +682,18 @@ to get example data.</p>
 </div>
 <p>It should make the Time-SIFT processing on the downloaded example data, stopping after the filtered dense clouds step.</p>
 <p>In the destination dir, you should obtain new directories, <code class="docutils literal notranslate"><span class="pre">0_before</span></code> and <code class="docutils literal notranslate"><span class="pre">1_after</span></code> at the same level as the <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code> directory. These new directories contain all the results natively co-registered.</p>
-<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. <img alt="image1" src="https://forge.inrae.fr/Denis.Feurer/timesift-odm-data-example/-/raw/main/Example.webp?ref_type=heads" /></p>
+<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp</p>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">alt<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).</p>
+</dd>
+<dt class="field-even">align<span class="colon">:</span></dt>
+<dd class="field-even"><p>center</p>
+</dd>
+</dl>
+</div></blockquote>
 <section id="your-own-data">
 <h6>Your own data<a class="headerlink" href="#your-own-data" title="Link to this heading"></a></h6>
 <p>In your dataset directory (usually <code class="docutils literal notranslate"><span class="pre">datasets</span></code>, but you can have chosen another name) you have to prepare a Time-SIFT project directory (default name : <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code>, <em>can be tuned via a parameter</em>) that contains : * <code class="docutils literal notranslate"><span class="pre">images/</span></code> : a subdirectory with all images of all epochs. This directory name is fixed as it is the one expected by ODM *

map-accuracy/index.html

@@ -681,7 +681,18 @@ to get example data.</p>
 </div>
 <p>It should make the Time-SIFT processing on the downloaded example data, stopping after the filtered dense clouds step.</p>
 <p>In the destination dir, you should obtain new directories, <code class="docutils literal notranslate"><span class="pre">0_before</span></code> and <code class="docutils literal notranslate"><span class="pre">1_after</span></code> at the same level as the <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code> directory. These new directories contain all the results natively co-registered.</p>
-<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. <img alt="image1" src="https://forge.inrae.fr/Denis.Feurer/timesift-odm-data-example/-/raw/main/Example.webp?ref_type=heads" /></p>
+<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp</p>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">alt<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).</p>
+</dd>
+<dt class="field-even">align<span class="colon">:</span></dt>
+<dd class="field-even"><p>center</p>
+</dd>
+</dl>
+</div></blockquote>
 <section id="your-own-data">
 <h6>Your own data<a class="headerlink" href="#your-own-data" title="Link to this heading"></a></h6>
 <p>In your dataset directory (usually <code class="docutils literal notranslate"><span class="pre">datasets</span></code>, but you can have chosen another name) you have to prepare a Time-SIFT project directory (default name : <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code>, <em>can be tuned via a parameter</em>) that contains : * <code class="docutils literal notranslate"><span class="pre">images/</span></code> : a subdirectory with all images of all epochs. This directory name is fixed as it is the one expected by ODM *

sw/_sources/map-accuracy.rst.txt

@@ -313,7 +313,11 @@ It should make the Time-SIFT processing on the downloaded example data, stopping
 
 In the destination dir, you should obtain new directories, ``0_before`` and ``1_after`` at the same level as the ``time-sift-block`` directory. These new directories contain all the results natively co-registered.
 
-You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. |image1|
+You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp
+   :alt: Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).
+   :align: center
+
 
 Your own data
 ~~~~~~~~~~~~~

sw/flowchart/index.html

@@ -29,7 +29,7 @@ const load = async () => {
     const mermaids_to_add_zoom = 1 === -1 ? all_mermaids.length : 1;
     const mermaids_processed = document.querySelectorAll(".mermaid[data-processed='true']");
     if(mermaids_to_add_zoom > 0) {
-        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-e7c455c9-5a3c-4225-a3f6-d7342163e1dc] svg");
+        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-6b153c43-6973-4797-9d86-255b7fe6d326] svg");
         if(all_mermaids.length !== mermaids_processed.length) {
             // try again in a sec, wait for mermaids to load
             setTimeout(load, 200);
@@ -490,7 +490,7 @@ window.addEventListener("load", load);
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Link to this heading"></a></h1>
-<pre data-zoom-id="id-e7c455c9-5a3c-4225-a3f6-d7342163e1dc" class="mermaid">
+<pre data-zoom-id="id-6b153c43-6973-4797-9d86-255b7fe6d326" class="mermaid">
          flowchart  TB
 
 

sw/map-accuracy/index.html

@@ -681,7 +681,18 @@ to get example data.</p>
 </div>
 <p>It should make the Time-SIFT processing on the downloaded example data, stopping after the filtered dense clouds step.</p>
 <p>In the destination dir, you should obtain new directories, <code class="docutils literal notranslate"><span class="pre">0_before</span></code> and <code class="docutils literal notranslate"><span class="pre">1_after</span></code> at the same level as the <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code> directory. These new directories contain all the results natively co-registered.</p>
-<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. <img alt="image1" src="https://forge.inrae.fr/Denis.Feurer/timesift-odm-data-example/-/raw/main/Example.webp?ref_type=heads" /></p>
+<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp</p>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">alt<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).</p>
+</dd>
+<dt class="field-even">align<span class="colon">:</span></dt>
+<dd class="field-even"><p>center</p>
+</dd>
+</dl>
+</div></blockquote>
 <section id="your-own-data">
 <h6>Your own data<a class="headerlink" href="#your-own-data" title="Link to this heading"></a></h6>
 <p>In your dataset directory (usually <code class="docutils literal notranslate"><span class="pre">datasets</span></code>, but you can have chosen another name) you have to prepare a Time-SIFT project directory (default name : <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code>, <em>can be tuned via a parameter</em>) that contains : * <code class="docutils literal notranslate"><span class="pre">images/</span></code> : a subdirectory with all images of all epochs. This directory name is fixed as it is the one expected by ODM *

te/_sources/map-accuracy.rst.txt

@@ -313,7 +313,11 @@ It should make the Time-SIFT processing on the downloaded example data, stopping
 
 In the destination dir, you should obtain new directories, ``0_before`` and ``1_after`` at the same level as the ``time-sift-block`` directory. These new directories contain all the results natively co-registered.
 
-You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. |image1|
+You can then use `CloudCompare <https://cloudcompare.org/>`__ to compute distance between the ``datasets/0_before/odm_filterpoints/point_cloud.ply`` and the ``datasets/1_after/odm_filterpoints point_cloud.ply`` and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp
+   :alt: Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).
+   :align: center
+
 
 Your own data
 ~~~~~~~~~~~~~

te/flowchart/index.html

@@ -30,7 +30,7 @@ const load = async () => {
     const mermaids_to_add_zoom = 1 === -1 ? all_mermaids.length : 1;
     const mermaids_processed = document.querySelectorAll(".mermaid[data-processed='true']");
     if(mermaids_to_add_zoom > 0) {
-        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-084b5665-e626-4331-9ab0-e7c665cf4d4b] svg");
+        var svgs = d3.selectAll(".mermaid[data-zoom-id=id-ad881c84-468e-4031-aa84-7a4e7589c66a] svg");
         if(all_mermaids.length !== mermaids_processed.length) {
             // try again in a sec, wait for mermaids to load
             setTimeout(load, 200);
@@ -491,7 +491,7 @@ window.addEventListener("load", load);
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Link to this heading"></a></h1>
-<pre data-zoom-id="id-084b5665-e626-4331-9ab0-e7c665cf4d4b" class="mermaid">
+<pre data-zoom-id="id-ad881c84-468e-4031-aa84-7a4e7589c66a" class="mermaid">
          flowchart  TB
 
 

te/map-accuracy/index.html

@@ -682,7 +682,18 @@ to get example data.</p>
 </div>
 <p>It should make the Time-SIFT processing on the downloaded example data, stopping after the filtered dense clouds step.</p>
 <p>In the destination dir, you should obtain new directories, <code class="docutils literal notranslate"><span class="pre">0_before</span></code> and <code class="docutils literal notranslate"><span class="pre">1_after</span></code> at the same level as the <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code> directory. These new directories contain all the results natively co-registered.</p>
-<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below. <img alt="image1" src="https://forge.inrae.fr/Denis.Feurer/timesift-odm-data-example/-/raw/main/Example.webp?ref_type=heads" /></p>
+<p>You can then use <a class="reference external" href="https://cloudcompare.org/">CloudCompare</a> to compute distance between the <code class="docutils literal notranslate"><span class="pre">datasets/0_before/odm_filterpoints/point_cloud.ply</span></code> and the <code class="docutils literal notranslate"><span class="pre">datasets/1_after/odm_filterpoints</span> <span class="pre">point_cloud.ply</span></code> and obtain this image showing the difference between the two 3D surfaces. Here, two soil samples were excavated as can be seen on the image below.
+.. figure:: images/timeSIFTexampleSoilExcavation.webp</p>
+<blockquote>
+<div><dl class="field-list simple">
+<dt class="field-odd">alt<span class="colon">:</span></dt>
+<dd class="field-odd"><p>Distance between two point clouds showing soil surface before and after soil excavation (soil sampling for bulk density measurement).</p>
+</dd>
+<dt class="field-even">align<span class="colon">:</span></dt>
+<dd class="field-even"><p>center</p>
+</dd>
+</dl>
+</div></blockquote>
 <section id="your-own-data">
 <h6>Your own data<a class="headerlink" href="#your-own-data" title="Link to this heading"></a></h6>
 <p>In your dataset directory (usually <code class="docutils literal notranslate"><span class="pre">datasets</span></code>, but you can have chosen another name) you have to prepare a Time-SIFT project directory (default name : <code class="docutils literal notranslate"><span class="pre">time-sift-block</span></code>, <em>can be tuned via a parameter</em>) that contains : * <code class="docutils literal notranslate"><span class="pre">images/</span></code> : a subdirectory with all images of all epochs. This directory name is fixed as it is the one expected by ODM *