Update documentation

_sources/arguments/align.rst.txt

@@ -12,7 +12,9 @@ align
 
 Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: ``None``
 
-Uses [CODEM](https://github.com/NCALM-UH/CODEM, credits to Craig Glennie and the group at CRREL). The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
+
+The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
 
 
 `Learn to edit <https://github.com/opendronemap/docs#how-to-make-your-first-contribution>`_ and help improve `this page <https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst>`_!

arguments/align/index.html

@@ -456,7 +456,8 @@
 <span id="id1"></span><h1>align<a class="headerlink" href="#align" title="Permalink to this heading"></a></h1>
 <p><strong>Options:</strong> <em>&lt;path string&gt;</em></p>
 <p>Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: <code class="docutils literal notranslate"><span class="pre">None</span></code></p>
-<p>Uses [CODEM](<a class="reference external" href="https://github.com/NCALM-UH/CODEM">https://github.com/NCALM-UH/CODEM</a>, credits to Craig Glennie and the group at CRREL). The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
+<p>Uses <a class="reference external" href="https://github.com/NCALM-UH/CODEM">CODEM</a>, credits to Craig Glennie and the group at CRREL.</p>
+<p>The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
 <p><a class="reference external" href="https://github.com/opendronemap/docs#how-to-make-your-first-contribution">Learn to edit</a> and help improve <a class="reference external" href="https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst">this page</a>!</p>
 </section>
 

cs/_sources/arguments/align.rst.txt

@@ -12,7 +12,9 @@ align
 
 Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: ``None``
 
-Uses [CODEM](https://github.com/NCALM-UH/CODEM, credits to Craig Glennie and the group at CRREL). The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
+
+The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
 
 
 `Learn to edit <https://github.com/opendronemap/docs#how-to-make-your-first-contribution>`_ and help improve `this page <https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst>`_!

cs/arguments/align/index.html

@@ -457,7 +457,8 @@
 <span id="id1"></span><h1>align<a class="headerlink" href="#align" title="Permalink to this heading"></a></h1>
 <p><strong>Options:</strong> <em>&lt;path string&gt;</em></p>
 <p>Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: <code class="docutils literal notranslate"><span class="pre">None</span></code></p>
-<p>Uses [CODEM](<a class="reference external" href="https://github.com/NCALM-UH/CODEM">https://github.com/NCALM-UH/CODEM</a>, credits to Craig Glennie and the group at CRREL). The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
+<p>Uses <a class="reference external" href="https://github.com/NCALM-UH/CODEM">CODEM</a>, credits to Craig Glennie and the group at CRREL.</p>
+<p>The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
 <p><a class="reference external" href="https://github.com/opendronemap/docs#how-to-make-your-first-contribution">Learn to edit</a> and help improve <a class="reference external" href="https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst">this page</a>!</p>
 </section>
 

cs/flowchart/index.html

@@ -24,7 +24,7 @@
         <script src="https://unpkg.com/d3/dist/d3.min.js"></script>
         <script>
                 window.addEventListener("load", function () {
-                  var svgs = d3.selectAll(".mermaid#id-88f6851f-24f3-47e5-8800-d50f86c221f4 svg");
+                  var svgs = d3.selectAll(".mermaid#id-3ba795c2-faf2-4bc7-9e6b-3d993c435755 svg");
                   svgs.each(function() {
                     var svg = d3.select(this);
                     svg.html("<g>" + svg.html() + "</g>");
@@ -471,7 +471,7 @@
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Permalink to this heading"></a></h1>
-<div id="id-88f6851f-24f3-47e5-8800-d50f86c221f4" class="mermaid">
+<div id="id-3ba795c2-faf2-4bc7-9e6b-3d993c435755" class="mermaid">
              flowchart  TB
 
 

es/_sources/arguments/align.rst.txt

@@ -12,7 +12,9 @@ align
 
 Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: ``None``
 
-Uses [CODEM](https://github.com/NCALM-UH/CODEM, credits to Craig Glennie and the group at CRREL). The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
+
+The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
 
 
 `Learn to edit <https://github.com/opendronemap/docs#how-to-make-your-first-contribution>`_ and help improve `this page <https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst>`_!

es/arguments/align/index.html

@@ -457,7 +457,8 @@
 <span id="id1"></span><h1>align<a class="headerlink" href="#align" title="Enlace permanente a este encabezado"></a></h1>
 <p><strong>Options:</strong> <em>&lt;path string&gt;</em></p>
 <p>Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: <code class="docutils literal notranslate"><span class="pre">None</span></code></p>
-<p>Uses [CODEM](<a class="reference external" href="https://github.com/NCALM-UH/CODEM">https://github.com/NCALM-UH/CODEM</a>, credits to Craig Glennie and the group at CRREL). The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
+<p>Uses <a class="reference external" href="https://github.com/NCALM-UH/CODEM">CODEM</a>, credits to Craig Glennie and the group at CRREL.</p>
+<p>The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
 <p><a class="reference external" href="https://github.com/opendronemap/docs#how-to-make-your-first-contribution">Learn to edit</a> and help improve <a class="reference external" href="https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst">this page</a>!</p>
 </section>
 

es/flowchart/index.html

@@ -24,7 +24,7 @@
         <script src="https://unpkg.com/d3/dist/d3.min.js"></script>
         <script>
                 window.addEventListener("load", function () {
-                  var svgs = d3.selectAll(".mermaid#id-b0d88ec4-f66f-4c8c-9a3c-d983057222f3 svg");
+                  var svgs = d3.selectAll(".mermaid#id-0e75b49a-8ab7-4495-a100-6e2d96af94bc svg");
                   svgs.each(function() {
                     var svg = d3.select(this);
                     svg.html("<g>" + svg.html() + "</g>");
@@ -471,7 +471,7 @@
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Enlace permanente a este encabezado"></a></h1>
-<div id="id-b0d88ec4-f66f-4c8c-9a3c-d983057222f3" class="mermaid">
+<div id="id-0e75b49a-8ab7-4495-a100-6e2d96af94bc" class="mermaid">
              flowchart  TB
 
 

fil/_sources/arguments/align.rst.txt

@@ -12,7 +12,9 @@ align
 
 Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: ``None``
 
-Uses [CODEM](https://github.com/NCALM-UH/CODEM, credits to Craig Glennie and the group at CRREL). The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
+
+The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
 
 
 `Learn to edit <https://github.com/opendronemap/docs#how-to-make-your-first-contribution>`_ and help improve `this page <https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst>`_!

fil/arguments/align/index.html

@@ -456,7 +456,8 @@
 <span id="id1"></span><h1>align<a class="headerlink" href="#align" title="Permalink to this heading"></a></h1>
 <p><strong>Options:</strong> <em>&lt;path string&gt;</em></p>
 <p>Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: <code class="docutils literal notranslate"><span class="pre">None</span></code></p>
-<p>Uses [CODEM](<a class="reference external" href="https://github.com/NCALM-UH/CODEM">https://github.com/NCALM-UH/CODEM</a>, credits to Craig Glennie and the group at CRREL). The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
+<p>Uses <a class="reference external" href="https://github.com/NCALM-UH/CODEM">CODEM</a>, credits to Craig Glennie and the group at CRREL.</p>
+<p>The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
 <p><a class="reference external" href="https://github.com/opendronemap/docs#how-to-make-your-first-contribution">Learn to edit</a> and help improve <a class="reference external" href="https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst">this page</a>!</p>
 </section>
 

fil/flowchart/index.html

@@ -23,7 +23,7 @@
         <script src="https://unpkg.com/d3/dist/d3.min.js"></script>
         <script>
                 window.addEventListener("load", function () {
-                  var svgs = d3.selectAll(".mermaid#id-bc2aa3c7-30da-4c84-a316-52ab971647a7 svg");
+                  var svgs = d3.selectAll(".mermaid#id-c747a11f-88ba-45d6-9e95-dff788e61c3a svg");
                   svgs.each(function() {
                     var svg = d3.select(this);
                     svg.html("<g>" + svg.html() + "</g>");
@@ -470,7 +470,7 @@
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Permalink to this heading"></a></h1>
-<div id="id-bc2aa3c7-30da-4c84-a316-52ab971647a7" class="mermaid">
+<div id="id-c747a11f-88ba-45d6-9e95-dff788e61c3a" class="mermaid">
              flowchart  TB
 
 

flowchart/index.html

@@ -23,7 +23,7 @@
         <script src="https://unpkg.com/d3/dist/d3.min.js"></script>
         <script>
                 window.addEventListener("load", function () {
-                  var svgs = d3.selectAll(".mermaid#id-4b103565-3f46-4905-a41f-2d00872127ef svg");
+                  var svgs = d3.selectAll(".mermaid#id-f38d170a-2df7-48ef-bf83-ab2f1281cf50 svg");
                   svgs.each(function() {
                     var svg = d3.select(this);
                     svg.html("<g>" + svg.html() + "</g>");
@@ -470,7 +470,7 @@
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Permalink to this heading"></a></h1>
-<div id="id-4b103565-3f46-4905-a41f-2d00872127ef" class="mermaid">
+<div id="id-f38d170a-2df7-48ef-bf83-ab2f1281cf50" class="mermaid">
              flowchart  TB
 
 

fr/_sources/arguments/align.rst.txt

@@ -12,7 +12,9 @@ align
 
 Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: ``None``
 
-Uses [CODEM](https://github.com/NCALM-UH/CODEM, credits to Craig Glennie and the group at CRREL). The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
+
+The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
 
 
 `Learn to edit <https://github.com/opendronemap/docs#how-to-make-your-first-contribution>`_ and help improve `this page <https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst>`_!

fr/arguments/align/index.html

@@ -457,7 +457,8 @@
 <span id="id1"></span><h1>align<a class="headerlink" href="#align" title="Lien permanent vers cette rubrique"></a></h1>
 <p><strong>Options:</strong> <em>&lt;path string&gt;</em></p>
 <p>Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: <code class="docutils literal notranslate"><span class="pre">None</span></code></p>
-<p>Uses [CODEM](<a class="reference external" href="https://github.com/NCALM-UH/CODEM">https://github.com/NCALM-UH/CODEM</a>, credits to Craig Glennie and the group at CRREL). The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
+<p>Uses <a class="reference external" href="https://github.com/NCALM-UH/CODEM">CODEM</a>, credits to Craig Glennie and the group at CRREL.</p>
+<p>The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
 <p><a class="reference external" href="https://github.com/opendronemap/docs#how-to-make-your-first-contribution">Learn to edit</a> and help improve <a class="reference external" href="https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst">this page</a>!</p>
 </section>
 

fr/flowchart/index.html

@@ -24,7 +24,7 @@
         <script src="https://unpkg.com/d3/dist/d3.min.js"></script>
         <script>
                 window.addEventListener("load", function () {
-                  var svgs = d3.selectAll(".mermaid#id-e99b0ca3-6d0f-49cf-b44f-c47c746962f8 svg");
+                  var svgs = d3.selectAll(".mermaid#id-b408399f-52ed-4b9e-85db-12a6bceb246f svg");
                   svgs.each(function() {
                     var svg = d3.select(this);
                     svg.html("<g>" + svg.html() + "</g>");
@@ -471,7 +471,7 @@
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Lien permanent vers cette rubrique"></a></h1>
-<div id="id-e99b0ca3-6d0f-49cf-b44f-c47c746962f8" class="mermaid">
+<div id="id-b408399f-52ed-4b9e-85db-12a6bceb246f" class="mermaid">
              flowchart  TB
 
 

id/_sources/arguments/align.rst.txt

@@ -12,7 +12,9 @@ align
 
 Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: ``None``
 
-Uses [CODEM](https://github.com/NCALM-UH/CODEM, credits to Craig Glennie and the group at CRREL). The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
+
+The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
 
 
 `Learn to edit <https://github.com/opendronemap/docs#how-to-make-your-first-contribution>`_ and help improve `this page <https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst>`_!

id/arguments/align/index.html

@@ -457,7 +457,8 @@
 <span id="id1"></span><h1>align<a class="headerlink" href="#align" title="Permalink to this heading"></a></h1>
 <p><strong>Options:</strong> <em>&lt;path string&gt;</em></p>
 <p>Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: <code class="docutils literal notranslate"><span class="pre">None</span></code></p>
-<p>Uses [CODEM](<a class="reference external" href="https://github.com/NCALM-UH/CODEM">https://github.com/NCALM-UH/CODEM</a>, credits to Craig Glennie and the group at CRREL). The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
+<p>Uses <a class="reference external" href="https://github.com/NCALM-UH/CODEM">CODEM</a>, credits to Craig Glennie and the group at CRREL.</p>
+<p>The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
 <p><a class="reference external" href="https://github.com/opendronemap/docs#how-to-make-your-first-contribution">Learn to edit</a> and help improve <a class="reference external" href="https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst">this page</a>!</p>
 </section>
 

id/flowchart/index.html

@@ -24,7 +24,7 @@
         <script src="https://unpkg.com/d3/dist/d3.min.js"></script>
         <script>
                 window.addEventListener("load", function () {
-                  var svgs = d3.selectAll(".mermaid#id-863bcc43-4d3d-4744-984f-3da5c6e1ccfe svg");
+                  var svgs = d3.selectAll(".mermaid#id-2f9c11e0-878a-4e3e-b98f-47cfffbc63a2 svg");
                   svgs.each(function() {
                     var svg = d3.select(this);
                     svg.html("<g>" + svg.html() + "</g>");
@@ -471,7 +471,7 @@
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Permalink to this heading"></a></h1>
-<div id="id-863bcc43-4d3d-4744-984f-3da5c6e1ccfe" class="mermaid">
+<div id="id-2f9c11e0-878a-4e3e-b98f-47cfffbc63a2" class="mermaid">
              flowchart  TB
 
 

sw/_sources/arguments/align.rst.txt

@@ -12,7 +12,9 @@ align
 
 Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: ``None``
 
-Uses [CODEM](https://github.com/NCALM-UH/CODEM, credits to Craig Glennie and the group at CRREL). The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
+
+The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
 
 
 `Learn to edit <https://github.com/opendronemap/docs#how-to-make-your-first-contribution>`_ and help improve `this page <https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst>`_!

sw/arguments/align/index.html

@@ -456,7 +456,8 @@
 <span id="id1"></span><h1>align<a class="headerlink" href="#align" title="Permalink to this heading"></a></h1>
 <p><strong>Options:</strong> <em>&lt;path string&gt;</em></p>
 <p>Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: <code class="docutils literal notranslate"><span class="pre">None</span></code></p>
-<p>Uses [CODEM](<a class="reference external" href="https://github.com/NCALM-UH/CODEM">https://github.com/NCALM-UH/CODEM</a>, credits to Craig Glennie and the group at CRREL). The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
+<p>Uses <a class="reference external" href="https://github.com/NCALM-UH/CODEM">CODEM</a>, credits to Craig Glennie and the group at CRREL.</p>
+<p>The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
 <p><a class="reference external" href="https://github.com/opendronemap/docs#how-to-make-your-first-contribution">Learn to edit</a> and help improve <a class="reference external" href="https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst">this page</a>!</p>
 </section>
 

sw/flowchart/index.html

@@ -23,7 +23,7 @@
         <script src="https://unpkg.com/d3/dist/d3.min.js"></script>
         <script>
                 window.addEventListener("load", function () {
-                  var svgs = d3.selectAll(".mermaid#id-e4f37a92-2040-4f94-aa0c-174f3b764491 svg");
+                  var svgs = d3.selectAll(".mermaid#id-52e4ff19-c922-47f7-b0f7-d4a7e43a9b51 svg");
                   svgs.each(function() {
                     var svg = d3.select(this);
                     svg.html("<g>" + svg.html() + "</g>");
@@ -470,7 +470,7 @@
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Permalink to this heading"></a></h1>
-<div id="id-e4f37a92-2040-4f94-aa0c-174f3b764491" class="mermaid">
+<div id="id-52e4ff19-c922-47f7-b0f7-d4a7e43a9b51" class="mermaid">
              flowchart  TB
 
 

te/_sources/arguments/align.rst.txt

@@ -12,7 +12,9 @@ align
 
 Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: ``None``
 
-Uses [CODEM](https://github.com/NCALM-UH/CODEM, credits to Craig Glennie and the group at CRREL). The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
+
+The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
 
 
 `Learn to edit <https://github.com/opendronemap/docs#how-to-make-your-first-contribution>`_ and help improve `this page <https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst>`_!

te/arguments/align/index.html

@@ -457,7 +457,8 @@
 <span id="id1"></span><h1>align<a class="headerlink" href="#align" title="Permalink to this heading"></a></h1>
 <p><strong>Options:</strong> <em>&lt;path string&gt;</em></p>
 <p>Path to a GeoTIFF DEM or a LAS/LAZ point cloud that the reconstruction outputs should be automatically aligned to. Experimental. Default: <code class="docutils literal notranslate"><span class="pre">None</span></code></p>
-<p>Uses [CODEM](<a class="reference external" href="https://github.com/NCALM-UH/CODEM">https://github.com/NCALM-UH/CODEM</a>, credits to Craig Glennie and the group at CRREL). The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
+<p>Uses <a class="reference external" href="https://github.com/NCALM-UH/CODEM">CODEM</a>, credits to Craig Glennie and the group at CRREL.</p>
+<p>The details of the method are available at <a class="reference external" href="https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md">https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md</a>.</p>
 <p><a class="reference external" href="https://github.com/opendronemap/docs#how-to-make-your-first-contribution">Learn to edit</a> and help improve <a class="reference external" href="https://github.com/OpenDroneMap/docs/blob/publish/source/arguments_edit/align.rst">this page</a>!</p>
 </section>
 

te/flowchart/index.html

@@ -24,7 +24,7 @@
         <script src="https://unpkg.com/d3/dist/d3.min.js"></script>
         <script>
                 window.addEventListener("load", function () {
-                  var svgs = d3.selectAll(".mermaid#id-edde3a94-80ba-48c6-8005-1a3b5c246767 svg");
+                  var svgs = d3.selectAll(".mermaid#id-8a6b902c-b4ba-48a8-9183-17608efbf92d svg");
                   svgs.each(function() {
                     var svg = d3.select(this);
                     svg.html("<g>" + svg.html() + "</g>");
@@ -471,7 +471,7 @@
              
   <section id="flowchart-with-options">
 <h1>Flowchart with options<a class="headerlink" href="#flowchart-with-options" title="Permalink to this heading"></a></h1>
-<div id="id-edde3a94-80ba-48c6-8005-1a3b5c246767" class="mermaid">
+<div id="id-8a6b902c-b4ba-48a8-9183-17608efbf92d" class="mermaid">
              flowchart  TB