kopia lustrzana https://github.com/jupyterhub/repo2docker
88 wiersze
2.6 KiB
Bash
Executable File
88 wiersze
2.6 KiB
Bash
Executable File
#!/bin/bash
|
|
# This downloads and installs a pinned version of micromamba
|
|
# and sets up the base environment
|
|
set -ex
|
|
|
|
cd $(dirname $0)
|
|
|
|
export MAMBA_VERSION=1.0.0
|
|
export CONDA_VERSION=4.13.0
|
|
|
|
URL="https://anaconda.org/conda-forge/micromamba/${MAMBA_VERSION}/download/${CONDA_PLATFORM}/micromamba-${MAMBA_VERSION}-0.tar.bz2"
|
|
|
|
# make sure we don't do anything funky with user's $HOME
|
|
# since this is run as root
|
|
unset HOME
|
|
mkdir -p ${CONDA_DIR}
|
|
|
|
export MICROMAMBA_EXE="/usr/local/bin/micromamba"
|
|
|
|
time wget -qO- ${URL} | tar -xvj bin/micromamba
|
|
mv bin/micromamba "$MICROMAMBA_EXE"
|
|
chmod 0755 "$MICROMAMBA_EXE"
|
|
|
|
eval "$(${MICROMAMBA_EXE} shell hook -p ${CONDA_DIR} -s posix)"
|
|
|
|
micromamba activate
|
|
|
|
export PATH="${PWD}/bin:$PATH"
|
|
|
|
cat <<EOT >> ${CONDA_DIR}/.condarc
|
|
channels:
|
|
- conda-forge
|
|
- defaults
|
|
auto_update_conda: false
|
|
show_channel_urls: true
|
|
update_dependencies: false
|
|
# channel_priority: flexible
|
|
EOT
|
|
|
|
micromamba install conda=${CONDA_VERSION} mamba=${MAMBA_VERSION} -y
|
|
|
|
echo "installing notebook env:"
|
|
cat "${NB_ENVIRONMENT_FILE}"
|
|
|
|
|
|
time ${MAMBA_EXE} create -p ${NB_PYTHON_PREFIX} --file "${NB_ENVIRONMENT_FILE}"
|
|
|
|
if [[ ! -z "${NB_REQUIREMENTS_FILE:-}" ]]; then
|
|
echo "installing pip requirements"
|
|
cat "${NB_REQUIREMENTS_FILE}"
|
|
${NB_PYTHON_PREFIX}/bin/python -mpip install --no-cache --no-deps -r "${NB_REQUIREMENTS_FILE}"
|
|
fi
|
|
# empty conda history file,
|
|
# which seems to result in some effective pinning of packages in the initial env,
|
|
# which we don't intend.
|
|
# this file must not be *removed*, however
|
|
echo '' > ${NB_PYTHON_PREFIX}/conda-meta/history
|
|
|
|
if [[ ! -z "${KERNEL_ENVIRONMENT_FILE:-}" ]]; then
|
|
# install kernel env and register kernelspec
|
|
echo "installing kernel env:"
|
|
cat "${KERNEL_ENVIRONMENT_FILE}"
|
|
time ${MAMBA_EXE} create -p ${KERNEL_PYTHON_PREFIX} --file "${KERNEL_ENVIRONMENT_FILE}"
|
|
|
|
if [[ ! -z "${KERNEL_REQUIREMENTS_FILE:-}" ]]; then
|
|
echo "installing pip requirements for kernel"
|
|
cat "${KERNEL_REQUIREMENTS_FILE}"
|
|
${KERNEL_PYTHON_PREFIX}/bin/python -mpip install --no-cache --no-deps -r "${KERNEL_REQUIREMENTS_FILE}"
|
|
fi
|
|
|
|
${KERNEL_PYTHON_PREFIX}/bin/ipython kernel install --prefix "${NB_PYTHON_PREFIX}"
|
|
echo '' > ${KERNEL_PYTHON_PREFIX}/conda-meta/history
|
|
${MAMBA_EXE} list -p ${KERNEL_PYTHON_PREFIX}
|
|
fi
|
|
|
|
# Clean things out!
|
|
time ${MAMBA_EXE} clean --all -f -y
|
|
|
|
# Remove the pip cache created as part of installing micromamba
|
|
rm -rf /root/.cache
|
|
|
|
chown -R $NB_USER:$NB_USER ${CONDA_DIR}
|
|
|
|
${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX}
|
|
|
|
# Set NPM config
|
|
${NB_PYTHON_PREFIX}/bin/npm config --global set prefix ${NPM_DIR}
|