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267 Commity (db3ef0d713e3960ea7dddc233ffb45872740da9b)

Autor SHA1 Wiadomość Data
Chris Holdgraf 5c33eb08c8
Update docs/source/architecture.md 2019-05-29 10:45:59 -07:00
Chris Holdgraf be144374bc
Update docs/source/architecture.md 2019-05-28 08:37:25 -07:00
Chris Holdgraf 24c2d6193d
Update docs/source/architecture.md 2019-05-28 08:37:13 -07:00
Chris Holdgraf 90a59b233f
Update docs/source/architecture.md 
Co-Authored-By: Tim Head <betatim@gmail.com>
 2019-05-27 21:34:43 -07:00
Chris Holdgraf dbaec44517 contentprovider 2019-05-25 17:51:57 -07:00
Tim Head 5303010d0e Drop support for Python 3.4 2019-05-21 22:10:55 +02:00
Erik Sundell 2b0aa99d84 Merge remote-tracking branch 'upstream/master' into pipenv-support 2019-05-12 15:44:10 +02:00
Kacper Kowalik (Xarthisius) caef6686d1
Do not try to build the image with root as the primary user 
Fixes #267 and #395
 2019-05-09 13:06:02 -05:00
Tim Head e66f0af23c
Revert "[MRG] Do not try to build the image with root as the primary user." 2019-05-09 13:14:32 +02:00
Kacper Kowalik (Xarthisius) 7d948bda8d
Do not try to build the image with root as the primary user 
Fixes #267 and #395
 2019-05-08 14:55:43 -05:00
Tim Head d674eceeba
[MRG] release info updates (#668) 
[MRG] release info updates
 2019-05-06 00:20:20 +02:00
Chris Holdgraf 56c1160d9a bumping release date 2019-05-05 11:23:12 -07:00
Chris Holdgraf 63da4c2f36
Merge pull request #664 from betatim/update-changelog-v090 
[MRG] Update change log in preparation for releasing v0.9.0
 2019-05-05 11:21:49 -07:00
Chris Holdgraf a3a4eba89c
Update docs/source/contributing/tasks.md 2019-05-05 10:28:50 -07:00
Tim Head 19cb905102 Mention the invention of the REES in the change log 2019-05-05 15:09:59 +02:00
Tim Head 56708c662e
specification info page (#662) 
specification info page
 2019-05-05 15:06:59 +02:00
Tim Head e098d23463 Update change log in preparation for releasing v0.9.0 2019-05-05 15:00:09 +02:00
Chris Holdgraf 00bbde26bb release info 2019-05-04 15:03:17 -07:00
Chris Holdgraf f86a06d4ba tim comments in specification doc 2019-05-04 10:57:27 -07:00
Chris Holdgraf 1c66925090 updates per comments 2019-05-03 09:38:07 -07:00
Wayne's Bioinformatics Code Portal 21c730298e
tweak language to make clear `exec "$@"` works 
originally it was: "The last line must be ``exec "$@"`` equivalent." Seemed open to interpretation as I needed to deduce what the equivalent of that would be here. I think adding 'or' before equivalent shows that will work, but I assume other options exist? Or why note say  "The last line must be ``exec "$@"``"?
 2019-05-03 11:14:25 -04:00
Chris Holdgraf b20438bd59 specification info 2019-05-02 16:01:37 -07:00
Tim Head e35277410a
[MRG] Update contributing guidelines and issue templates (#655) 
[MRG] Update contributing guidelines and issue templates
 2019-04-30 21:40:15 +02:00
Kirstie Whitaker a6911a10a0
Update docs/source/contributing/contributing.md 2019-04-30 20:11:17 +01:00
Joseph Hamman 9ded2b5ee6 add note to changelog 2019-04-30 10:06:24 -07:00
Tim Head 5e67e3c743
Support .binder directory (#653) 
Support .binder directory
 2019-04-30 18:29:38 +02:00
Kirstie Whitaker 6344f39d25
Update contributing.md 2019-04-30 09:23:34 +01:00
Tim Head 34cff4d5d3
Update docs/source/contributing/contributing.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-30 09:20:47 +01:00
Chris Holdgraf c25e6bc2ae
Update docs/source/contributing/contributing.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-30 09:13:32 +01:00
Joseph Hamman 3c0ceaacc2 clarify that only one of binder and .binder can be used at once 2019-04-28 20:28:09 -07:00
Kirstie Whitaker 6c43fb927a Extend the points about feature requests & bug reports 2019-04-28 19:58:55 +01:00
Kirstie Whitaker 5a7add7929 Update process and guidelines for making contribution 2019-04-28 19:41:33 +01:00
Kirstie Whitaker a27420e29f Add types of contributions section 2019-04-28 19:11:32 +01:00
Joseph Hamman c230c70f4e support for .binder directory 2019-04-27 17:01:20 -07:00
Min RK 2acf0974c3 miniconda is 4.6.14 2019-04-26 16:25:41 +02:00
Min RK 109793bffd conda 4.6.14 2019-04-26 16:09:00 +02:00
Min RK 1f7d91af5f Merge remote-tracking branch 'jhamman/bump_conda_ver' into conda-env 2019-04-26 16:05:38 +02:00
Erik Sundell 5df7a3628c Document pipfile(.lock) as an option 2019-04-21 00:30:11 +02:00
Tim Head 843b7a5e30 Unpin pip again 2019-04-16 21:49:37 +02:00
Chris Holdgraf 2db2f4683c
mentioning s2i in faq 2019-04-12 11:46:13 -07:00
Lindsey Heagy f936cf566c
Merge pull request #640 from betatim/fix-spinx-deprecation 
[MRG] Fix sphinx deprecation for recommonmark
 2019-04-09 18:34:23 -07:00
Tim Head f4e3754434 Update change log 2019-04-08 16:43:49 +02:00
Tim Head cbb375e156 Black-ify the sphinx configuration code 2019-04-08 07:52:25 +02:00
Tim Head da9f8de0e3 Update recommonmark ocnfiguration 
In new versions of SPhinx the way we were configuring the recommonmark
extension has become deprecated. This switches us to the new way of
configuring it.
 2019-04-08 07:51:30 +02:00
Joseph Hamman f9620edd8e freeze versions 2019-04-04 13:35:12 -07:00
Joseph Hamman bf3d0c133c fallback to 4.6.10 2019-04-04 12:29:34 -07:00
Joseph Hamman a3d4f95de0 changelog addition 2019-04-04 11:54:33 -07:00
Min RK 8d8c21e55e
Merge pull request #631 from jtpio/docs-default-py37 
[MRG] Python 3.7 as the default in the docs
 2019-03-29 16:01:44 +01:00
Jeremy Tuloup 177ee4b650
Python 3.7 as default in the docs 2019-03-27 21:54:50 +01:00
David Anthoff 65d4e6c034 Update changelog 2019-03-21 12:55:19 -07:00
David Anthoff ae86baaa52 Use NB_PYTHON_PREFIX for kernel install path 2019-03-21 09:07:12 -07:00
David Anthoff 61ece15c75 Update changelog 2019-03-13 09:18:23 -07:00
Fredrik Ekre 95a59026ae Julia: Update links to Pkg.jl documentation and change 
Compat to [compat] since that is how the section is
usually referred to.
 2019-03-13 09:26:57 +01:00
Athanasia Monika Mowinckel 8ed4bf32d4
moved the shiny faq below the note 2019-03-08 21:41:36 +01:00
Athanasia Monika Mowinckel 736c3dace9
added some debug for R shiny 2019-03-08 19:49:21 +01:00
Tim Head 63ac63f3e7
Merge pull request #608 from agitter/patch-1 
Expand environment.yml config notes
 2019-03-07 22:29:44 +01:00
Anthony Gitter 14754dc8d3
Minor rephrasing 2019-03-06 10:49:48 -06:00
Tim Head 5072b8e609
Update docs/source/config_files.rst 
Co-Authored-By: agitter <agitter@users.noreply.github.com>
 2019-03-06 10:49:04 -06:00
Tim Head a9dd69a3ce
Merge pull request #595 from davidanthoff/reorg-julia 
[MRG+1] Split julia support into pre julia 1.0 and post julia 1.0
 2019-03-06 13:18:21 +01:00
David Anthoff e845db33da Update julia documentation 2019-03-05 21:09:56 -08:00
Nathan Daly f6074aaa3f
Update docs/source/faq.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-05 17:56:51 -08:00
Nathan Daly 4a882f445a
Update docs/source/config_files.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-05 17:56:22 -08:00
Anthony Gitter bacf84bbcd
Expand environment.yml config notes 2019-03-05 19:24:19 -06:00
David Anthoff 9600d4b438 Fix changelog formatting 2019-03-05 08:45:25 -08:00
Tim Head 07bd9be43c
Update docs/source/changelog.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-05 08:28:21 -08:00
Tim Head c7d62a3387 Change contributor guide language to remove the word "code" 2019-03-05 07:46:54 +01:00
David Anthoff 2f8d43d5f0 Update changelog 2019-03-04 21:32:53 -08:00
David Anthoff 3ba4c5766b Merge branch 'master' into reorg-julia 2019-03-04 21:31:12 -08:00
Tim Head 6689ee3b97
Update docs/source/faq.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-04 21:30:17 -08:00
Tim Head 73a1a6da61
Update docs/source/faq.rst 
Co-Authored-By: davidanthoff <anthoff@berkeley.edu>
 2019-03-04 21:29:54 -08:00
Tim Head 1427cd1047 Reopen change log 2019-03-04 19:50:37 +01:00
David Anthoff 5790933d8c Update documentation with new julia support 2019-03-02 17:27:58 -08:00
Tim Head a4063e3d8d Add FAQ entry and Howto on exporting conda envs 2019-03-02 08:40:35 +01:00
Tim Head ed514946ed Fix release date of 0.8.0 2019-02-21 14:49:09 +01:00
Tim Head af2cc83aa7
Merge pull request #577 from betatim/releasing-0.7.1 
[MRG] Update ChangeLog to release 0.8.0
 2019-02-21 12:09:13 +01:00
Tim Head 35d1cac0bd Update ChangeLog to the v0.8.0 release of repo2docker. 2019-02-21 11:43:04 +01:00
Tim Head 7fa922a612 Fix up double label trouble in the config file docs 2019-02-21 11:34:32 +01:00
Tim Head 397695bbaa
Merge pull request #539 from yuvipanda/v3.7 
Bump default python version to 3.7
 2019-02-21 11:06:03 +01:00
Min RK de3658442b update docs for pinning Python 
- clarify that runtime.txt is only for env files that don't support runtime specification
- specify default version of Python and when it changed
- more links to pinning docs
 2019-02-21 10:20:56 +01:00
Min RK 2baf31dc8a add default_python replacement to sphinx 
and get docs version from the package so it doesn't get out of date
 2019-02-21 10:07:54 +01:00
Tim Head bc5a53d977 Update documentation with more cross references 2019-02-21 08:38:38 +01:00
Tim Head 349f801aae
install: don't rely on git, download zip file directly 
Co-Authored-By: haraldschilly <harald.schilly@gmail.com>
 2019-02-20 15:19:57 +01:00
Harald Schilly 74cb6dbde7
install: one-liner to install most recent upstream code 2019-02-20 12:37:48 +01:00
Yuvi Panda e3d82f8a7c
Merge pull request #568 from choldgraf/docsupdate 
updating interfaces page and adding jupyterlab workspaces page
 2019-01-30 11:36:35 -08:00
Lindsey Heagy d8ccc8085d
Update conf.py 
update copyright year in the docs
 2019-01-29 22:06:14 -08:00
Chris Holdgraf 112b718758 lowercase n 2019-01-29 14:12:19 -08:00
Lindsey Heagy 01fedb2b80
Update docs/source/howto/lab_workspaces.rst 
Co-Authored-By: choldgraf <choldgraf@gmail.com>
 2019-01-29 14:10:21 -08:00
Chris Holdgraf 88042fff84 updating interfaces page 2019-01-28 20:09:47 -08:00
Craig Willis 0b368773e5 Fixed sphinx error finding changelog 2019-01-09 14:20:13 -06:00
Tim Head 8d2617479a
Merge pull request #526 from minrk/annotated-tags 
Add tag command snippet
 2018-12-20 21:08:52 +01:00
James Bourbeau a9e9399e06 Minor howto doc fixes 2018-12-20 10:16:37 -06:00
Tim Head 27a5243072
Update docs/source/contributing/tasks.md 
Co-Authored-By: minrk <benjaminrk@gmail.com>
 2018-12-20 14:16:07 +01:00
Min RK 8d4f0242f9 Add tag command snippet 
make sure it's an annotated tag
 2018-12-19 13:55:00 +01:00
James Bourbeau 9421c73117 Add CLI API docs 2018-12-17 13:06:32 -06:00
James Bourbeau 5f65cd0858 Use relative link to changelog [skip travis] 2018-12-17 08:49:56 -06:00
James Bourbeau 2f00a1444c Update new contributing guide changelog ref [skip travis] 2018-12-17 08:46:21 -06:00
James Bourbeau d78125b91b Merge remote-tracking branch 'upstream/master' into move-changelog 2018-12-17 08:37:38 -06:00
James Bourbeau 4f3d5de778 Add GitHub users to extlinks 2018-12-17 08:36:29 -06:00
Tim Head 3f9f4918c5 Fix typos and syntax errors in the documentation 2018-12-15 08:40:27 +01:00
James Bourbeau 454782426e Move changelog to docs 2018-12-14 14:20:47 -06:00