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69 Commity (ae3aeb6dc5dd6deee6d663b7088eb74d225a815f)

Autor SHA1 Wiadomość Data
pre-commit-ci[bot] ae3aeb6dc5 [pre-commit.ci] auto fixes from pre-commit.com hooks 
for more information, see https://pre-commit.ci
 2022-10-31 22:40:52 +00:00
pre-commit-ci[bot] 27c2b403db [pre-commit.ci] auto fixes from pre-commit.com hooks 
for more information, see https://pre-commit.ci
 2022-10-31 22:32:14 +00:00
Erik Sundell 15a1fb6e2d refactor: manually add transitions to f-strings 2022-10-31 21:22:32 +01:00
Nicholas Bollweg 23e195f363 add path check in conda/repo-dir, more docs in conftest.py 2022-10-31 13:09:17 +01:00
Erik Sundell 3ea45d1258 refactor readme files: in conda tests 2022-10-16 11:03:24 +02:00
Erik Sundell 42bb1b384a ci: adjust to and rename extra-args.yaml to test-extra-args.yaml 
I misunderstood extra-args.yaml to be a file that was recognized by
repo2docker's CLI, but in reality it was just a file recognized by the
repo2docker test suite. Following that, I renamed this testing specific
file to test-extra-args.yaml to help others avoid making that mistake
and added comments to clarify that.

This commit also gathers the conda buildpacks separate readme files into
a single readme file.
 2022-10-15 15:42:35 +02:00
Erik Sundell f1b1339507 ci: refactor conda tests, from 6 to 5 (~5 min saved) 
With this commit, we combine testing the default python version
installation into the default R version installation test.
 2022-10-10 09:15:17 +02:00
Erik Sundell f69d65feb9 ci: refactor conda tests, from 11 to 6 (~20 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell 5ffbe65bec ci: delete conda/channel-dep test of a mamba 0.6+ feature (~5 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell 87dd7e1283 ci: delete conda/r4.0 test, where r3.6 and r4.2 remains (~5 min saved) 2022-10-10 09:15:17 +02:00
Erik Sundell b18adce53f ci: test conda/py310 instead of conda/py38 2022-10-10 09:15:17 +02:00
Erik Sundell 3034a09a91 ci: test conda/r4.2 instead of conda/r4.1 2022-10-10 09:15:17 +02:00
Yuvi Panda 42bb1a0383
Merge pull request #1171 from SylvainCorlay/update-mamba 
Update mamba
 2022-08-01 16:48:25 -07:00
Sylvain Corlay 8a4c48e88f Update mamba 2022-08-01 23:03:15 +02:00
Min RK 5cfd798008 handle r version unspecified in environment.yml 2022-02-25 12:03:40 +01:00
Min RK 84220028bd put micromamba in /usr/local/bin 
instead of tmp, since we want it to stick around.
 2022-01-28 15:58:36 +01:00
Min RK 7f89926e51
Merge pull request #1062 from wolfv/micromamba 
bootstrap base env with micromamba
 2022-01-27 09:42:53 +01:00
YuviPanda 9066d079d0 Use testthat, rather than tinytest 
tinytest doesn't exist in older MRAN snapshots
 2022-01-25 19:38:47 +05:30
YuviPanda f6737cfff5 Use a smaller R library in our tests 
ggplot2 is a big library with a bunch of dependencies,
making our already slow R tests even slower. This PR
switches them to using the tinytest library, which has
no dependencies and is much smaller.
 2022-01-25 18:58:58 +05:30
Sylvain Corlay 65a36cc3f7 PR review comments: update micromamba, use MAMBA_EXE environment variable 2022-01-21 13:16:33 +01:00
Sylvain Corlay 5f82b2c8b0 Update micromamba installation 2022-01-21 11:21:00 +01:00
Wolf Vollprecht 245fc1b939 use 0.16.0 2022-01-21 11:21:00 +01:00
Sylvain Corlay 089f6a87a5 Use micromamba 0.15.2 2022-01-21 11:21:00 +01:00
Wolf Vollprecht 7c4f2a5b4f fix up urls 2022-01-21 11:21:00 +01:00
Madhur Tandon d2a2c070e7 use experimental build of micromamba 2022-01-21 11:21:00 +01:00
Madhur Tandon 8926cdc968 minor fixes 2022-01-21 11:21:00 +01:00
Madhur Tandon 9c109f95b4 use latest micromamba and fix MAMBA_ROOT_PREFIX 2022-01-21 11:21:00 +01:00
Madhur Tandon 2e702f0248 rename file and add conda-forge channel to .condarc 2022-01-21 11:21:00 +01:00
Madhur Tandon 6cc7567f2e use micromamba 0.12.2 2022-01-21 11:21:00 +01:00
Madhur Tandon f9388c3200 use latest micromamba 2022-01-21 11:21:00 +01:00
Madhur Tandon 2bfbf44efa adhere to lint 2022-01-21 11:21:00 +01:00
Madhur Tandon f508bf167e replace mamba & conda with micromamba 2022-01-21 11:20:58 +01:00
Andrei Plamada 8a817eba97 add tests for R conda 2022-01-07 13:37:43 +01:00
Sylvain Corlay 6c1a2722b9 Use mambaforge instead of miniforge 2020-12-06 11:50:11 +01:00
Simon Li 30ef2209cc
Merge pull request #979 from minrk/mamba-061 
Mamba 0.6.1
 2020-10-23 09:58:48 +01:00
Min RK 1bb92770eb regression test for specifying channel name in enviornment.yml dependency 
this didn't work with mamba 0.5
 2020-10-22 15:30:31 +02:00
Kyungdahm Yun 81513b06d6 Add test for writable permission on REPO_DIR 2020-10-19 21:49:09 -07:00
YuviPanda 798ba4f4bd Fix conda test to account for newer conda 2020-03-04 22:12:38 +05:30
Tim Head 356ea10868
Merge pull request #840 from minrk/py38 
Python 3.8 support
 2020-01-30 16:10:37 +01:00
Min RK 7d20da1d04 add test for py38 2020-01-30 11:53:16 +01:00
Uwe L. Korn 5421e09d2b Make tests/conda/r/verify excutable 2020-01-30 10:51:47 +01:00
Uwe L. Korn ffbc7c0a6b Add tests for r-in-conda 2020-01-30 08:15:42 +01:00
pughdr d64f050d34 Bumped conda version to 4.7.12 2019-10-01 11:25:10 +03:00
Scott Henderson 5ea4c29b83 bump conda minor version to 4.7.10 and refreeze 2019-07-29 17:30:50 +00:00
David R. Pugh 399b339a4a [WIP] Version bump Conda from 4.6.14 to 4.7.5 (#719) 
Version bump conda to 4.7.5

Co-authored-by: pughdr <david.pugh@kaust.edu.sa>
 2019-07-12 18:50:11 +02:00
Tim Head 8b004e06dc Apply auto formatting 
Apologies to anyone finding this commit via git blame or log

run the autoformatting by

    pre-commit run --all-files
 2019-06-03 21:37:25 +02:00
Min RK 9bf2e13832 test `conda install` in the default env in postBuild 2019-05-24 11:04:47 +02:00
Min RK 2acf0974c3 miniconda is 4.6.14 2019-04-26 16:25:41 +02:00
Min RK 186e1bbc5d repo-path verifies conda prefix 2019-04-26 16:15:40 +02:00
Min RK 51f15ee7bd update some tests with new expectations 
- conda is not importable in the frontmost python
- sys.executable is in $NB_PYTHON_PREFIX (this was true before, but it's value has changed)
 2019-04-25 16:51:05 +02:00