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1 629 Commity
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1629 Commity (28941f79000269ccb1346f91871f4f5d2ba179d6)

Autor SHA1 Wiadomość Data
Tim Head df89849e21
tweak language to make clear `exec "$@"` works (#663) 
tweak language to make clear `exec "$@"` works
 2019-05-03 18:18:42 +02:00
Wayne's Bioinformatics Code Portal 48578bda66
Merge pull request #1 from fomightez/tweak_start_config_descr 
tweak language to make clear `exec "$@"` works
 2019-05-03 11:18:34 -04:00
Wayne's Bioinformatics Code Portal 21c730298e
tweak language to make clear `exec "$@"` works 
originally it was: "The last line must be ``exec "$@"`` equivalent." Seemed open to interpretation as I needed to deduce what the equivalent of that would be here. I think adding 'or' before equivalent shows that will work, but I assume other options exist? Or why note say  "The last line must be ``exec "$@"``"?
 2019-05-03 11:14:25 -04:00
Chris Holdgraf b20438bd59 specification info 2019-05-02 16:01:37 -07:00
Tim Head e976627c1e
Merge pull request #657 from yuvipanda/abs-start 
Make sure ENTRYPOINT is an absolute path
 2019-04-30 21:44:50 +02:00
Tim Head e35277410a
[MRG] Update contributing guidelines and issue templates (#655) 
[MRG] Update contributing guidelines and issue templates
 2019-04-30 21:40:15 +02:00
Tim Head 92d69010c7
Merge pull request #652 from betatim/fix-memory-limit 
[MRG] Fix handling of memory limit command line argument
 2019-04-30 21:34:52 +02:00
Kirstie Whitaker a6911a10a0
Update docs/source/contributing/contributing.md 2019-04-30 20:11:17 +01:00
Tim Head c56e8b1f21
add note to changelog (#659) 
add note to changelog
 2019-04-30 19:50:27 +02:00
yuvipanda c8cff1bccc Fix typo in comment 2019-04-30 10:46:34 -07:00
yuvipanda c0a33b340b Add test for integral --build-memory-limit 2019-04-30 10:46:09 -07:00
Joseph Hamman 9ded2b5ee6 add note to changelog 2019-04-30 10:06:24 -07:00
yuvipanda 4dd32f3563 Make sure ENTRYPOINT is an absolute path 
Unlike other parts of the generated Dockerfile,
the start script is evaluated at run time, rather
than at build time. Currently, we assume that the
current working directory is the same at runtime
as build time for the start script. This doesn't
hold true always, and particularly not in JupyterHub
environments where ${HOME} is often overlaid with
a persistent directory.

We change this to always refer to the full path,
using the ${REPO_DIR} environment variable. This
lets people building JupyterHub images to set
REPO_DIR to something like /srv/repo (like hubploy
does), and still have a working start script.
 2019-04-30 10:04:53 -07:00
Tim Head 5e67e3c743
Support .binder directory (#653) 
Support .binder directory
 2019-04-30 18:29:38 +02:00
Joseph Hamman 6de4c5ea6b add unit tests for binder dir 2019-04-30 08:35:58 -07:00
Tim Head 9099def40a
[MRG] install notebook in its own env (#651) 
[MRG] install notebook in its own env
 2019-04-30 14:25:21 +02:00
Kirstie Whitaker 6344f39d25
Update contributing.md 2019-04-30 09:23:34 +01:00
Tim Head 34cff4d5d3
Update docs/source/contributing/contributing.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-30 09:20:47 +01:00
Kirstie Whitaker 288c3fe811
Update .github/ISSUE_TEMPLATE/feature_request.md 2019-04-30 09:18:01 +01:00
Chris Holdgraf c25e6bc2ae
Update docs/source/contributing/contributing.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-30 09:13:32 +01:00
Tim Head e2c7de8d19 Update Julia tests for new conda env path 2019-04-30 08:43:19 +02:00
Tim Head e15007d528 Make sure start script is executable 2019-04-30 08:43:19 +02:00
Joseph Hamman 34ad355de6 fix up nix-shell-wrapper for .binder feature 2019-04-29 20:30:07 -07:00
Kirstie Whitaker f9afea1f29
Reword comment and remove thank you prompt 2019-04-29 17:58:22 +01:00
Joseph Hamman 05273abb38 fix bash spacing 2019-04-29 08:52:18 -07:00
Chris Holdgraf c9a161746d
Update CONTRIBUTING.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-29 16:40:02 +01:00
Chris Holdgraf f3e004dd19
Update CONTRIBUTING.md 
Co-Authored-By: KirstieJane <kw401@cam.ac.uk>
 2019-04-29 16:39:49 +01:00
Joseph Hamman 7ac4cb4932 error if both binder and .binder dirs exist 2019-04-29 08:05:49 -07:00
Kirstie Whitaker 6cd3d1d895
Update .github/ISSUE_TEMPLATE/feature_request.md 2019-04-29 15:09:42 +01:00
Joseph Hamman e83b12f5b2 add missing break 2019-04-29 06:47:51 -07:00
Joseph Hamman 3c0ceaacc2 clarify that only one of binder and .binder can be used at once 2019-04-28 20:28:09 -07:00
Chris Holdgraf 7681a6c774
[MRG] Update issue templates (#654) 
[MRG] Update issue templates
 2019-04-28 16:50:45 -07:00
Kirstie Whitaker 13922ee249 Embelish the links in contributing.md 2019-04-28 20:09:34 +01:00
Kirstie Whitaker 6c43fb927a Extend the points about feature requests & bug reports 2019-04-28 19:58:55 +01:00
Kirstie Whitaker 5a7add7929 Update process and guidelines for making contribution 2019-04-28 19:41:33 +01:00
Kirstie Whitaker a27420e29f Add types of contributions section 2019-04-28 19:11:32 +01:00
Kirstie Whitaker 1e0eb726ce Make html comments all on one long line 2019-04-28 18:25:57 +01:00
Kirstie Whitaker 6ff13e9162 Add comments and additional structure to feature request 2019-04-28 18:25:25 +01:00
Kirstie Whitaker 1d9a64551f Add html comments to bug report 2019-04-28 18:12:23 +01:00
Tim Head 991a6826a8
Tweak bug report template 2019-04-28 18:31:46 +02:00
Tim Head e3ee8afa6f Update issue templates 2019-04-28 13:02:41 +02:00
Joseph Hamman 3941a92a7d fix missing () 2019-04-27 17:16:14 -07:00
Joseph Hamman c230c70f4e support for .binder directory 2019-04-27 17:01:20 -07:00
Tim Head 24eb3f923a Fix handling of memory limit command line argument 
If a string of only numerals is passed as argument we assume it should
be converted to an integer and specifies a size in bytes.
 2019-04-27 10:49:32 +02:00
Min RK 2acf0974c3 miniconda is 4.6.14 2019-04-26 16:25:41 +02:00
Min RK 186e1bbc5d repo-path verifies conda prefix 2019-04-26 16:15:40 +02:00
Min RK 9b7618cb79 refreeze 2019-04-26 16:14:30 +02:00
Min RK 109793bffd conda 4.6.14 2019-04-26 16:09:00 +02:00
Min RK 1f7d91af5f Merge remote-tracking branch 'jhamman/bump_conda_ver' into conda-env 2019-04-26 16:05:38 +02:00
Min RK 70d950cc05 install python2 kernelspec into notebook env 
like other things, this was always the right thing to do,
but more important now that notebook prefix is not the same as CONDA_DIR
 2019-04-25 17:00:13 +02:00