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2362 Commity (0b766082085a0e4f092988aabfeb36cb7ce452b3)

Autor SHA1 Wiadomość Data
Wolf Vollprecht 7ad3c177d2 trigger 2022-01-21 11:21:00 +01:00
Wolf Vollprecht abc1fe98c8 trigger 2022-01-21 11:21:00 +01:00
Madhur Tandon 22d4781809 use strict channel priority 2022-01-21 11:21:00 +01:00
Madhur Tandon 2d27bb2af6 revert back to using install 2022-01-21 11:21:00 +01:00
Madhur Tandon d2a2c070e7 use experimental build of micromamba 2022-01-21 11:21:00 +01:00
Madhur Tandon b08c7dc3b6 use env update instead of install 2022-01-21 11:21:00 +01:00
Madhur Tandon e12c436af2 add MAMBA_EXE environment variable 2022-01-21 11:21:00 +01:00
Madhur Tandon 8926cdc968 minor fixes 2022-01-21 11:21:00 +01:00
Madhur Tandon 9c109f95b4 use latest micromamba and fix MAMBA_ROOT_PREFIX 2022-01-21 11:21:00 +01:00
Madhur Tandon 2e702f0248 rename file and add conda-forge channel to .condarc 2022-01-21 11:21:00 +01:00
Madhur Tandon 3288bca6a4 fix tests + change name of script 2022-01-21 11:21:00 +01:00
Madhur Tandon 6cc7567f2e use micromamba 0.12.2 2022-01-21 11:21:00 +01:00
Madhur Tandon f9388c3200 use latest micromamba 2022-01-21 11:21:00 +01:00
Madhur Tandon 2bfbf44efa adhere to lint 2022-01-21 11:21:00 +01:00
Madhur Tandon f508bf167e replace mamba & conda with micromamba 2022-01-21 11:20:58 +01:00
Simon Li a37a205c0e
Merge pull request #1108 from aplamada/test_R_conda 
[MRG] add tests for R conda
 2022-01-11 10:39:22 +00:00
Simon Li aa17545a9b
Merge pull request #1111 from yuvipanda/no-ppa 
Say 'apt repository' rather than PPA
 2022-01-10 19:02:01 +00:00
YuviPanda c04fff30cd Say 'apt repository' rather than PPA 
PPA is a specific kind of apt repository, hosted on
launchpad.net. We use https://cran.r-project.org/bin/linux/ubuntu/,
which is just a regular apt repository. The PPA terminology
always confused me, so this just clears that up
 2022-01-10 17:43:09 +05:30
Andrei V. Plamada b2b0f758ff
Merge branch 'jupyterhub:main' into test_R_conda 2022-01-08 18:33:59 +01:00
Simon Li 43525352a7
Merge pull request #1107 from yuvipanda/new-r 
Bump default R version to 4.1
 2022-01-08 14:44:37 +00:00
Simon Li 457f718386
Merge pull request #1104 from yuvipanda/rspm 
Get binary R packages from packagemanager.rstudio.com
 2022-01-08 14:43:48 +00:00
Andrei Plamada 8a817eba97 add tests for R conda 2022-01-07 13:37:43 +01:00
YuviPanda 7fd9a3d25f Move 3.6.1 back to 3.6.1-3bionic 
Was accidentally included along with the 3.6.3-1biocnic
upgrade for 3.6
 2022-01-07 11:23:47 +05:30
YuviPanda 3cb3fbf853 Remove unnecessary print() 2022-01-07 11:18:09 +05:30
YuviPanda 05e504a7ce Cleanup some comments 2022-01-07 11:18:02 +05:30
YuviPanda ceb4f8ac4f Hardcode rspm URL as snapshot for IRKernel 2022-01-07 11:17:46 +05:30
YuviPanda e2aefcfbdd Update test to match new default R version 2022-01-05 22:51:27 +05:30
YuviPanda 54636c6ecf Bump default R version to 4.1 
3.6 is almost 4 years old now.
 2022-01-05 22:32:07 +05:30
YuviPanda dbb5ff7c7d Clarify when mran raises valueerror 2022-01-05 21:35:07 +05:30
YuviPanda 8d194b2d1a Remove unused constants 2022-01-05 18:01:15 +05:30
YuviPanda 7c36566bf2 Fix test for particular version of R 3.6 2022-01-05 01:24:10 +05:30
YuviPanda c398de3d88 Update r 3.6 package version pins 
Based on output of apt-cache madison r-base-core
 2022-01-05 01:00:47 +05:30
YuviPanda 0b76e9ea44 Always install IRKernel as a binary package 
And add another R test for R4.0 + rspm
 2022-01-05 00:12:24 +05:30
YuviPanda 5246a0e7c2 Explicitly install r-base-core 
Otherwise latest version was being installed, giving us
R 4.1 even when we ask for 4.0
 2022-01-04 23:51:15 +05:30
YuviPanda ffbace3b38 Check for MRAN differently 2022-01-04 21:50:36 +05:30
YuviPanda d75c0079ad Test that older r snapshots get MRAN 2022-01-04 19:17:06 +05:30
YuviPanda 3ea55e9205 Fix call to rstudio_base_scripts 2022-01-04 19:01:26 +05:30
YuviPanda 685c8a0544 Satisfy black 2022-01-04 18:34:33 +05:30
YuviPanda fd6314d07d Solidify logic for picking rspm vs mran 
- MRAN doesn't seem to have R 4.1 specific snapshots, so let's
  default to RSPM for anything 4.1+.
- Otherwise, snapshot dates in 2022 will result in using rspm
 2022-01-04 18:30:39 +05:30
Tim Head d688997aee
Merge pull request #1105 from manics/update-jupyterlab 2022-01-03 17:52:36 +01:00
Tim Head 020160baf0
Merge pull request #1106 from manics/freeze.py--help 2021-12-28 11:50:35 +01:00
Simon Li 62c0de2282 Add help message to freeze.py 2021-12-23 14:45:41 +00:00
Simon Li da20e9f421 refreeze! 2021-12-23 13:57:27 +00:00
Simon Li 006b0179bf Update jupyterlab 3.2.5 jupyter-resource-usage 0.6.1 2021-12-23 13:55:47 +00:00
YuviPanda 054b602b13 Add test for r3.6 2021-12-20 18:24:15 +05:30
YuviPanda bca7d849bd Cleanupg RStudio & Shiny server install 
- Install a different version of RStudio for R < 4.1,
  as latest RStudio doesn't seem to support those. And
  newer RStudio isn't supported on these older R versions.
- Cleanup how Shiny is installed - install it with the same
  apt invocation as rstudio (saves time), and install shiny-proxy
  from PyPI instead or GitHub. The release on PyPI is the same
  as our previous GitHub pin.
- Remove outdated comment about different behavior for R 3.6 - I
  think now we get all our R versions from the same apt repo. Plus,
  the conditional was adding more scripts than just adding extra apt
  package repos
 2021-12-20 18:09:24 +05:30
YuviPanda 5d173a349d Make black happy 2021-12-17 15:56:00 +05:30
YuviPanda 1ed05b59c6 Install devtools, shiny & irkernel from a pin 
We were doing this from an old MRAN snapshot. I moved the pin
a little ahead, so IRKernel can also be installed from CRAN
instead of from GitHub. R <= 4.0 gets the old version, and anything
newer gets a more recent version of devtools. This gives us
fast installs for IRkernel with binary packages.

Also add a R 4.0 and R 4.1 test
 2021-12-17 15:52:27 +05:30
YuviPanda 290b008ac5 Fix some code comment references to MRAN 2021-12-17 15:17:44 +05:30
Yuvi Panda 4aa1d154a1
Merge pull request #1100 from TimoRoth/extra_bargs 
Add command line option to pass extra build args
 2021-12-17 14:52:06 +05:30