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2 174 Commity
6 Gałęzie
22 Tagi
6,7 MiB
Wykres commitów

2174 Commity (docs-dev)

Autor SHA1 Wiadomość Data
Tim Head 77ca9b9535 Add more test scenarios to Azure pipeline 2019-09-08 18:56:01 +02:00
Tim Head d8c8259343 Raise exception for unsupported R versions 2019-09-08 17:19:50 +02:00
Tim Head 9af9b34937
[MRG] Restore the hooks directory when building the docker image (#786) 
[MRG] Restore the hooks directory when building the docker image
 2019-09-08 17:17:06 +02:00
Tim Head 9e9dd062bc Restore the hooks directory when building the docker image 2019-09-08 17:11:28 +02:00
Tim Head c50983532e Use LooseVersion to compare versions instead of strings 2019-09-08 14:54:51 +02:00
Daniel Nüst e6cd4b19d9 reuse hosts definition in Zenodo tests 2019-09-08 14:51:17 +02:00
Daniel Nüst 0e4029bb8d add Figshare content provider 
moving common functions to a DoiProvider
 2019-09-08 14:51:17 +02:00
Tim Head afb24a4a0d
use getpass.getuser instead of os.getlogin (#789) 
use getpass.getuser instead of os.getlogin
 2019-09-08 14:41:57 +02:00
Min RK 00b7706e1f git needs to be set up 2019-09-08 12:34:11 +02:00
Min RK f47acaa1bd use getpass.getuser instead of os.getlogin 
os.getlogin doesn't work everywhere (can raise OSError, inappropriate ioctl for device)
 2019-09-08 11:54:22 +02:00
Carol Willing 3f8e56d0d9
Add azure pipelines badge 2019-09-08 11:17:29 +02:00
Carol Willing 98de7d1630
Merge pull request #787 from willingc/test-pipe 
Add baseline infra for Azure Pipelines
 2019-09-08 11:10:17 +02:00
Carol Willing b3c2c19a45
less tests 2019-09-08 10:31:08 +02:00
Carol Willing f3d9ac4a85
Add azure pipelines for testing 2019-09-08 08:04:24 +02:00
Tim Head 75c2a24c0c
Print Dockerfile to stdout when --no-build (#784) 
Print Dockerfile to stdout when --no-build
 2019-09-08 07:30:11 +02:00
Tim Head e646419e19
Merge pull request #517 from yuvipanda/help 
Provide help text for commandline arguments

Co-authored-by: Min RK <benjaminrk@gmail.com>
 2019-09-08 07:29:49 +02:00
Tim Head eae42740b6 Add tests for R version handling 2019-09-08 07:25:10 +02:00
Min RK 8e1bdd9765 only log Dockerfile at debug-level if not dry_run 
avoids double-display when using --debug --no-build
 2019-09-07 14:28:14 +02:00
Min RK e9c39e2596 respect self.log_level with json logs 2019-09-07 14:25:25 +02:00
Min RK 7f0cac84b5 print Dockerfile to stdout when `--no-build` 
Removes need to also specify `--debug` to see the dockerfile, which goes to the logs
 2019-09-07 14:25:07 +02:00
Min RK 8ef5faa2ab
Merge pull request #779 from nuest/docker_daemon_logmessage 
add explicit log message on failing Docker connection
 2019-09-07 14:07:03 +02:00
Tim Head 484dbef959
Merge pull request #782 from minrk/dockerignore-hooks 
add hooks to dockerignore
 2019-09-07 14:01:59 +02:00
Min RK 28941f7900 add hooks to dockerignore 
will hopefully fix dirty flag on docker hub
 2019-09-07 13:57:47 +02:00
Min RK 088cf6e308 let black have its way 2019-09-07 13:34:07 +02:00
Tim Head 0b839428cc Use new way of installing bioconductor 2019-09-07 13:30:46 +02:00
Min RK 4f428c3055
Merge pull request #681 from Xarthisius/abspath_in_scripts 
[MRG] Allow absolute paths in build_script_files. Fixes #673
 2019-09-07 12:33:14 +02:00
Daniel Nüst b3f82db558 exit and show clean error message (no log) if docker connection fails 2019-09-07 12:16:41 +02:00
Min RK 2871c07cc0
Merge branch 'master' into help 2019-09-07 12:16:23 +02:00
Tim Head 37774fc288
Merge pull request #727 from minrk/full-progress 
include full docker progress events in push progress events
 2019-09-07 11:45:32 +02:00
Tim Head 82cd28dbe7
include repo2docker version in docker tags (#777) 
include repo2docker version in docker tags
 2019-09-07 11:24:05 +02:00
Daniel Nüst c8cd3269c0 add explicit log message on failing Docker connection, see #774 2019-09-07 09:22:00 +02:00
Tim Head e0b1d474bd Add translation from short versions to long versions 2019-09-06 22:12:46 +02:00
Min RK 3cc3aa4968 use repo2docker version in docker tags 
docker tags will include versioneer tag, e.g. `0.10.0-4.abc123` where

- 0.10.0 is the latest tag
- 4 is the number of commits since then
- abc123 is the current commit hash
 2019-09-06 12:31:35 +02:00
Min RK 0e2349fdec avoid dirty in repo2docker version in docker image 
by calling git clean
 2019-09-06 12:26:56 +02:00
Tim Head 4be9fe0731 SUpport R runtime strings that don't specify a version 2019-09-06 12:12:06 +02:00
Tim Head ef9d27ac2c Add support for innstalling different versions of R 2019-09-03 07:20:38 +02:00
Tim Head b20eb6a84b
Merge pull request #771 from GeorgianaElena/fix_requirements_possible_encodings 
Handle different file encodings
 2019-08-30 17:09:38 +02:00
GeorgianaElena 75f4a70fec Black refactor 2019-08-30 11:26:48 +03:00
GeorgianaElena 5e4932b704 Added test for open_guess_encoding 2019-08-30 11:06:53 +03:00
GeorgianaElena 795769ee28 Removed debug print 2019-08-29 15:51:12 +03:00
GeorgianaElena 95fd0e5b81 Don't change file encoding 2019-08-29 15:13:33 +03:00
GeorgianaElena 3752fa1868 Added function to handle different file encodings 2019-08-28 16:25:12 +03:00
Tim Head 96cfc504ff
Merge pull request #770 from GeorgianaElena/upgrade_IRKernel 
[WIP] Upgrade IRKernel version to 1.0.2
 2019-08-26 18:38:43 +02:00
GeorgianaElena 5983ded5bb Upgrade IRKernel version to 1.0.2 2019-08-26 17:53:53 +03:00
Min RK 59795ecbda
Merge pull request #769 from kaust-vislab/miniconda-version-bump 
Bump Miniconda from 4.6.14 to 4.7.10
 2019-08-26 12:54:48 +02:00
pughdr 6de9bd4c69 Fixed merge conflict 2019-08-26 12:50:24 +03:00
Tim Head 46cd5670e8
Merge pull request #768 from davidanthoff/julia-1.2.0 
Add support for Julia 1.2.0
 2019-08-26 08:13:43 +02:00
David Anthoff 445bcb981c Add support for Julia 1.2.0 2019-08-25 21:46:23 -07:00
Scott Black ebbc9e0233 update messaging 2019-08-23 11:16:39 -06:00
Scott Black b068f8d9c1 extend wait time and cleanup messaging 2019-08-23 11:09:26 -06:00