Refreeze environments

The frozen Python 3.6 environment was empty so refreezing everything.
Added the generated environment.py-3.6.yml which used to be excluded by
gitignore because it was the only one not also commited to the repo.

.gitignore

@@ -25,7 +25,5 @@ include/
 generated/
 test_file_text.txt
 
-# Untracked artifacts from the conda script
-repo2docker/buildpacks/conda/environment.py-3.6.yml
 
 \.vscode/

repo2docker/buildpacks/conda/environment.frozen.yml

@@ -1,87 +1,85 @@
-# py3.5 conda packages are no longer being updated as of 12/2018
-# this file is hand-maintained now
-# and should only receive security fixes, no new features
+# AUTO GENERATED FROM environment.py-3.6.yml, DO NOT MANUALLY MODIFY
+# Frozen on 2018-12-11 21:19:13 UTC
 name: r2d
 channels:
   - conda-forge
   - defaults
   - conda-forge/label/broken
 dependencies:
+  - attrs=18.2.0=py_0
   - backcall=0.1.0=py_0
   - bleach=3.0.2=py_0
-  - bzip2=1.0.6=h470a237_2
-  - ca-certificates=2018.10.15=ha4d7672_0
-  - certifi=2018.8.24=py35_1001
+  - ca-certificates=2018.11.29=ha4d7672_0
+  - certifi=2018.11.29=py36_1000
   - decorator=4.3.0=py_0
   - defusedxml=0.5.0=py_1
-  - entrypoints=0.2.3=py35_2
+  - entrypoints=0.2.3=py36_1002
   - gmp=6.1.2=hfc679d8_0
-  - ipykernel=5.1.0=pyh24bf2e0_0
-  - ipython=7.0.1=py35h24bf2e0_0
+  - ipykernel=5.1.0=py36h24bf2e0_1001
+  - ipython=7.2.0=py36h24bf2e0_1000
   - ipython_genutils=0.2.0=py_1
-  - ipywidgets=7.2.1=py35_1
-  - jedi=0.12.1=py35_0
+  - ipywidgets=7.2.1=py36_1
+  - jedi=0.13.1=py36_1000
   - jinja2=2.10=py_1
-  - jsonschema=2.6.0=py35_2
-  - jupyter_client=5.2.3=py_1
+  - jsonschema=3.0.0a3=py36_1000
+  - jupyter_client=5.2.4=py_0
   - jupyter_core=4.4.0=py_0
-  - jupyterlab=0.34.9=py35_0
+  - jupyterlab=0.34.9=py36_0
   - jupyterlab_launcher=0.13.1=py_2
   - libffi=3.2.1=hfc679d8_5
   - libgcc-ng=7.2.0=hdf63c60_3
   - libsodium=1.0.16=h470a237_1
   - libstdcxx-ng=7.2.0=hdf63c60_3
-  - markupsafe=1.0=py35h470a237_1
-  - mistune=0.8.3=py35h470a237_2
+  - markupsafe=1.1.0=py36h470a237_0
+  - mistune=0.8.4=py36h470a237_0
   - nbconvert=5.4.0=1
   - nbformat=4.4.0=py_1
-  - ncurses=6.1=hfc679d8_1
-  - notebook=5.7.0=py35_0
+  - ncurses=6.1=hfc679d8_2
+  - notebook=5.7.2=py36_1000
   - openssl=1.0.2p=h470a237_1
   - pandoc=1.19.2=0
   - pandocfilters=1.4.2=py_1
   - parso=0.3.1=py_0
-  - pexpect=4.6.0=py35_0
-  - pickleshare=0.7.5=py35_0
-  - pip=18.0=py35_1001
-  - prometheus_client=0.4.2=py_0
+  - pexpect=4.6.0=py36_1000
+  - pickleshare=0.7.5=py36_1000
+  - pip=18.1=py36_1000
+  - prometheus_client=0.5.0=py_0
   - prompt_toolkit=2.0.7=py_0
-  - ptyprocess=0.6.0=py35_1000
-  - pygments=2.2.0=py_1
-  - python=3.5.5=h5001a0f_2
+  - ptyprocess=0.6.0=py36_1000
+  - pygments=2.3.0=py_0
+  - pyrsistent=0.14.7=py36h470a237_0
+  - python=3.6.7=h5001a0f_1
   - python-dateutil=2.7.5=py_0
-  - pyzmq=17.1.2=py35hae99301_0
+  - pyzmq=17.1.2=py36hae99301_1
   - readline=7.0=haf1bffa_1
   - send2trash=1.5.0=py_0
-  - setuptools=40.4.3=py35_0
-  - simplegeneric=0.8.1=py_1
-  - six=1.11.0=py35_1
-  - sqlite=3.25.3=hb1c47c0_0
-  - terminado=0.8.1=py35_1
-  - testpath=0.3.1=py35_1
+  - setuptools=40.6.2=py36_0
+  - six=1.12.0=py36_1000
+  - sqlite=3.26.0=hb1c47c0_0
+  - terminado=0.8.1=py36_1001
+  - testpath=0.4.2=py36_1000
   - tk=8.6.9=ha92aebf_0
-  - tornado=5.1.1=py35h470a237_0
-  - traitlets=4.3.2=py35_0
+  - tornado=5.1.1=py36h470a237_0
+  - traitlets=4.3.2=py36_1000
   - wcwidth=0.1.7=py_1
   - webencodings=0.5.1=py_1
-  - wheel=0.32.0=py35_1000
-  - widgetsnbextension=3.2.1=py35_1
+  - wheel=0.32.3=py36_0
+  - widgetsnbextension=3.2.1=py36_1
   - xz=5.2.4=h470a237_1
   - zeromq=4.2.5=hfc679d8_6
   - zlib=1.2.11=h470a237_3
   - pip:
-    - alembic==1.0.3
+    - alembic==1.0.5
     - async-generator==1.10
     - chardet==3.0.4
-    - idna==2.7
+    - idna==2.8
     - jupyterhub==0.9.4
     - mako==1.0.7
-    - notebook==5.7.2
     - nteract-on-jupyter==1.9.6
     - pamela==0.3.0
     - python-editor==1.0.3
     - python-oauth2==1.1.0
-    - requests==2.20.1
+    - requests==2.21.0
     - sqlalchemy==1.2.14
     - urllib3==1.24.1
 prefix: /opt/conda/envs/r2d

repo2docker/buildpacks/conda/environment.py-2.7.frozen.yml

@@ -1,5 +1,5 @@
 # AUTO GENERATED FROM environment.py-2.7.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2018-11-20 06:11:34 UTC
+# Frozen on 2018-12-11 21:15:11 UTC
 name: r2d
 channels:
   - conda-forge
@@ -9,30 +9,30 @@ dependencies:
   - backports=1.0=py_2
   - backports.shutil_get_terminal_size=1.0.0=py_3
   - backports_abc=0.5=py_1
-  - ca-certificates=2018.10.15=ha4d7672_0
-  - certifi=2018.10.15=py27_1000
+  - ca-certificates=2018.11.29=ha4d7672_0
+  - certifi=2018.11.29=py27_1000
   - decorator=4.3.0=py_0
   - enum34=1.1.6=py27_1001
   - futures=3.2.0=py27_1000
   - ipykernel=4.8.2=py27_0
   - ipython=5.8.0=py27_0
   - ipython_genutils=0.2.0=py_1
-  - jupyter_client=5.2.3=py_1
+  - jupyter_client=5.2.4=py_0
   - jupyter_core=4.4.0=py_0
   - libffi=3.2.1=hfc679d8_5
   - libgcc-ng=7.2.0=hdf63c60_3
   - libsodium=1.0.16=h470a237_1
   - libstdcxx-ng=7.2.0=hdf63c60_3
-  - ncurses=6.1=hfc679d8_1
+  - ncurses=6.1=hfc679d8_2
   - openssl=1.0.2p=h470a237_1
-  - pathlib2=2.3.2=py27_1000
+  - pathlib2=2.3.3=py27_1000
   - pexpect=4.6.0=py27_1000
   - pickleshare=0.7.5=py27_1000
   - pip=18.1=py27_1000
   - prompt_toolkit=1.0.15=py_1
   - ptyprocess=0.6.0=py27_1000
-  - pygments=2.2.0=py_1
-  - python=2.7.15=h33da82c_4
+  - pygments=2.3.0=py_0
+  - python=2.7.15=h33da82c_6
   - python-dateutil=2.7.5=py_0
   - pyzmq=17.1.2=py27hae99301_1
   - readline=7.0=haf1bffa_1
@@ -40,8 +40,8 @@ dependencies:
   - setuptools=40.6.2=py27_0
   - simplegeneric=0.8.1=py_1
   - singledispatch=3.4.0.3=py27_1000
-  - six=1.11.0=py27_1001
-  - sqlite=3.25.3=hb1c47c0_0
+  - six=1.12.0=py27_1000
+  - sqlite=3.26.0=hb1c47c0_0
   - tk=8.6.9=ha92aebf_0
   - tornado=5.1.1=py27h470a237_0
   - traitlets=4.3.2=py27_1000

repo2docker/buildpacks/conda/environment.py-3.6.frozen.yml

@@ -1,2 +1,86 @@
 # AUTO GENERATED FROM environment.py-3.6.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2018-12-11 09:51:24 UTC
+# Frozen on 2018-12-11 21:19:13 UTC
+name: r2d
+channels:
+  - conda-forge
+  - defaults
+  - conda-forge/label/broken
+dependencies:
+  - attrs=18.2.0=py_0
+  - backcall=0.1.0=py_0
+  - bleach=3.0.2=py_0
+  - ca-certificates=2018.11.29=ha4d7672_0
+  - certifi=2018.11.29=py36_1000
+  - decorator=4.3.0=py_0
+  - defusedxml=0.5.0=py_1
+  - entrypoints=0.2.3=py36_1002
+  - gmp=6.1.2=hfc679d8_0
+  - ipykernel=5.1.0=py36h24bf2e0_1001
+  - ipython=7.2.0=py36h24bf2e0_1000
+  - ipython_genutils=0.2.0=py_1
+  - ipywidgets=7.2.1=py36_1
+  - jedi=0.13.1=py36_1000
+  - jinja2=2.10=py_1
+  - jsonschema=3.0.0a3=py36_1000
+  - jupyter_client=5.2.4=py_0
+  - jupyter_core=4.4.0=py_0
+  - jupyterlab=0.34.9=py36_0
+  - jupyterlab_launcher=0.13.1=py_2
+  - libffi=3.2.1=hfc679d8_5
+  - libgcc-ng=7.2.0=hdf63c60_3
+  - libsodium=1.0.16=h470a237_1
+  - libstdcxx-ng=7.2.0=hdf63c60_3
+  - markupsafe=1.1.0=py36h470a237_0
+  - mistune=0.8.4=py36h470a237_0
+  - nbconvert=5.4.0=1
+  - nbformat=4.4.0=py_1
+  - ncurses=6.1=hfc679d8_2
+  - notebook=5.7.2=py36_1000
+  - openssl=1.0.2p=h470a237_1
+  - pandoc=1.19.2=0
+  - pandocfilters=1.4.2=py_1
+  - parso=0.3.1=py_0
+  - pexpect=4.6.0=py36_1000
+  - pickleshare=0.7.5=py36_1000
+  - pip=18.1=py36_1000
+  - prometheus_client=0.5.0=py_0
+  - prompt_toolkit=2.0.7=py_0
+  - ptyprocess=0.6.0=py36_1000
+  - pygments=2.3.0=py_0
+  - pyrsistent=0.14.7=py36h470a237_0
+  - python=3.6.7=h5001a0f_1
+  - python-dateutil=2.7.5=py_0
+  - pyzmq=17.1.2=py36hae99301_1
+  - readline=7.0=haf1bffa_1
+  - send2trash=1.5.0=py_0
+  - setuptools=40.6.2=py36_0
+  - six=1.12.0=py36_1000
+  - sqlite=3.26.0=hb1c47c0_0
+  - terminado=0.8.1=py36_1001
+  - testpath=0.4.2=py36_1000
+  - tk=8.6.9=ha92aebf_0
+  - tornado=5.1.1=py36h470a237_0
+  - traitlets=4.3.2=py36_1000
+  - wcwidth=0.1.7=py_1
+  - webencodings=0.5.1=py_1
+  - wheel=0.32.3=py36_0
+  - widgetsnbextension=3.2.1=py36_1
+  - xz=5.2.4=h470a237_1
+  - zeromq=4.2.5=hfc679d8_6
+  - zlib=1.2.11=h470a237_3
+  - pip:
+    - alembic==1.0.5
+    - async-generator==1.10
+    - chardet==3.0.4
+    - idna==2.8
+    - jupyterhub==0.9.4
+    - mako==1.0.7
+    - nteract-on-jupyter==1.9.6
+    - pamela==0.3.0
+    - python-editor==1.0.3
+    - python-oauth2==1.1.0
+    - requests==2.21.0
+    - sqlalchemy==1.2.14
+    - urllib3==1.24.1
+prefix: /opt/conda/envs/r2d
+

repo2docker/buildpacks/conda/environment.py-3.6.yml

@@ -0,0 +1,11 @@
+# AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
+# Generated on 2018-12-11 21:19:13 UTC
+dependencies:
+- python=3.6.*
+- ipywidgets==7.2.1
+- jupyterlab==0.34.9
+- nbconvert==5.4.0
+- notebook==5.7.2
+- pip:
+  - nteract_on_jupyter==1.9.6
+  - jupyterhub==0.9.4

repo2docker/buildpacks/conda/environment.py-3.7.frozen.yml

@@ -1,5 +1,5 @@
 # AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2018-11-20 06:13:10 UTC
+# Frozen on 2018-12-11 21:16:37 UTC
 name: r2d
 channels:
   - conda-forge
@@ -10,19 +10,19 @@ dependencies:
   - backcall=0.1.0=py_0
   - bleach=3.0.2=py_0
   - bzip2=1.0.6=h470a237_2
-  - ca-certificates=2018.10.15=ha4d7672_0
-  - certifi=2018.10.15=py37_1000
+  - ca-certificates=2018.11.29=ha4d7672_0
+  - certifi=2018.11.29=py37_1000
   - decorator=4.3.0=py_0
   - defusedxml=0.5.0=py_1
   - entrypoints=0.2.3=py37_1002
   - gmp=6.1.2=hfc679d8_0
   - ipykernel=5.1.0=py37h24bf2e0_1001
-  - ipython=7.1.1=py37h24bf2e0_1000
+  - ipython=7.2.0=py37h24bf2e0_1000
   - ipython_genutils=0.2.0=py_1
   - jedi=0.13.1=py37_1000
   - jinja2=2.10=py_1
   - jsonschema=3.0.0a3=py37_1000
-  - jupyter_client=5.2.3=py_1
+  - jupyter_client=5.2.4=py_0
   - jupyter_core=4.4.0=py_0
   - jupyterlab_launcher=0.13.1=py_2
   - libffi=3.2.1=hfc679d8_5
@@ -33,7 +33,7 @@ dependencies:
   - mistune=0.8.4=py37h470a237_0
   - nbconvert=5.4.0=1
   - nbformat=4.4.0=py_1
-  - ncurses=6.1=hfc679d8_1
+  - ncurses=6.1=hfc679d8_2
   - notebook=5.7.2=py37_1000
   - openssl=1.0.2p=h470a237_1
   - pandoc=1.19.2=0
@@ -42,19 +42,19 @@ dependencies:
   - pexpect=4.6.0=py37_1000
   - pickleshare=0.7.5=py37_1000
   - pip=18.1=py37_1000
-  - prometheus_client=0.4.2=py_0
+  - prometheus_client=0.5.0=py_0
   - prompt_toolkit=2.0.7=py_0
   - ptyprocess=0.6.0=py37_1000
-  - pygments=2.2.0=py_1
-  - pyrsistent=0.14.6=py37h470a237_0
+  - pygments=2.3.0=py_0
+  - pyrsistent=0.14.7=py37h470a237_0
   - python=3.7.1=h5001a0f_0
   - python-dateutil=2.7.5=py_0
   - pyzmq=17.1.2=py37hae99301_1
   - readline=7.0=haf1bffa_1
   - send2trash=1.5.0=py_0
   - setuptools=40.6.2=py37_0
-  - six=1.11.0=py37_1001
-  - sqlite=3.25.3=hb1c47c0_0
+  - six=1.12.0=py37_1000
+  - sqlite=3.26.0=hb1c47c0_0
   - terminado=0.8.1=py37_1001
   - testpath=0.4.2=py37_1000
   - tk=8.6.9=ha92aebf_0
@@ -70,17 +70,17 @@ dependencies:
   - ipywidgets=7.2.1=py37_0
   - jupyterlab=0.34.9=py37_0
   - pip:
-    - alembic==1.0.3
+    - alembic==1.0.5
     - async-generator==1.10
     - chardet==3.0.4
-    - idna==2.7
+    - idna==2.8
     - jupyterhub==0.9.4
     - mako==1.0.7
     - nteract-on-jupyter==1.9.6
     - pamela==0.3.0
     - python-editor==1.0.3
     - python-oauth2==1.1.0
-    - requests==2.20.1
+    - requests==2.21.0
     - sqlalchemy==1.2.14
     - urllib3==1.24.1
 prefix: /opt/conda/envs/r2d

repo2docker/buildpacks/conda/environment.py-3.7.yml

@@ -1,5 +1,5 @@
 # AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
-# Generated on 2018-11-20 06:13:10 UTC
+# Generated on 2018-12-11 21:16:37 UTC
 dependencies:
 - python=3.7.*
 - ipywidgets==7.2.1