Merge pull request #1024 from minrk/conda-lock

Refreeze with conda-lock

repo2docker/buildpacks/conda/__init__.py

@@ -23,6 +23,18 @@ class CondaBuildPack(BaseImage):
 
     """
 
+    # The kernel conda environment file, if any.
+    # As an absolute path within the container.
+    _kernel_environment_file = ""
+    # extra pip requirements.txt for the kernel
+    _kernel_requirements_file = ""
+
+    # The notebook server environment file.
+    # As an absolute path within the container.
+    _nb_environment_file = ""
+    # extra pip requirements.txt for the notebook env
+    _nb_requirements_file = ""
+
     def get_build_env(self):
         """Return environment variables to be set.
 
@@ -30,12 +42,30 @@ class CondaBuildPack(BaseImage):
         the `NB_PYTHON_PREFIX` to the location of the jupyter binary.
 
         """
+        if not self._nb_environment_file:
+            # get_build_script_files locates requirements/environment files,
+            # populating the _nb_environment_file attribute and others.
+            # FIXME: move file detection and initialization of those attributes to its own step?
+            self.get_build_script_files()
+
         env = super().get_build_env() + [
             ("CONDA_DIR", "${APP_BASE}/conda"),
             ("NB_PYTHON_PREFIX", "${CONDA_DIR}/envs/notebook"),
+            ("NB_ENVIRONMENT_FILE", self._nb_environment_file),
         ]
-        if self.py2:
-            env.append(("KERNEL_PYTHON_PREFIX", "${CONDA_DIR}/envs/kernel"))
+        if self._nb_requirements_file:
+            env.append(("NB_REQUIREMENTS_FILE", self._nb_requirements_file))
+
+        if self._kernel_environment_file:
+            # if kernel environment file is separate
+            env.extend(
+                [
+                    ("KERNEL_PYTHON_PREFIX", "${CONDA_DIR}/envs/kernel"),
+                    ("KERNEL_ENVIRONMENT_FILE", self._kernel_environment_file),
+                ]
+            )
+            if self._kernel_requirements_file:
+                env.append(("KERNEL_REQUIREMENTS_FILE", self._kernel_requirements_file))
         else:
             env.append(("KERNEL_PYTHON_PREFIX", "${NB_PYTHON_PREFIX}"))
         return env
@@ -81,7 +111,7 @@ class CondaBuildPack(BaseImage):
                 r"""
                 TIMEFORMAT='time: %3R' \
                 bash -c 'time /tmp/install-miniforge.bash' && \
-                rm /tmp/install-miniforge.bash /tmp/environment.yml
+                rm -rf /tmp/install-miniforge.bash /tmp/env
                 """,
             )
         ]
@@ -114,20 +144,38 @@ class CondaBuildPack(BaseImage):
         # major Python versions during upgrade.
         # If no version is specified or no matching X.Y version is found,
         # the default base environment is used.
-        frozen_name = "environment.frozen.yml"
+        frozen_name = "environment.lock"
+        pip_frozen_name = "requirements.txt"
         if py_version:
             if self.py2:
                 # python 2 goes in a different env
                 files[
-                    "conda/environment.py-2.7.frozen.yml"
-                ] = "/tmp/kernel-environment.yml"
+                    "conda/environment.py-2.7.lock"
+                ] = self._kernel_environment_file = "/tmp/env/kernel-environment.lock"
+                # additional pip requirements for kernel env
+                if os.path.exists(os.path.join(HERE, "requirements.py-2.7.txt")):
+                    files[
+                        "conda/requirements.py-2.7.txt"
+                    ] = (
+                        self._kernel_requirements_file
+                    ) = "/tmp/env/kernel-requirements.txt"
             else:
-                py_frozen_name = "environment.py-{py}.frozen.yml".format(py=py_version)
+                py_frozen_name = f"environment.py-{py_version}.lock"
                 if os.path.exists(os.path.join(HERE, py_frozen_name)):
                     frozen_name = py_frozen_name
-                else:
-                    self.log.warning("No frozen env: %s", py_frozen_name)
-        files["conda/" + frozen_name] = "/tmp/environment.yml"
+                    pip_frozen_name = f"requirements.py-{py_version}.txt"
+                if not frozen_name:
+                    self.log.warning(f"No frozen env for {py_version}")
+        files[
+            "conda/" + frozen_name
+        ] = self._nb_environment_file = "/tmp/env/environment.lock"
+
+        # add requirements.txt, if present
+        if os.path.exists(os.path.join(HERE, pip_frozen_name)):
+            files[
+                "conda/" + pip_frozen_name
+            ] = self._nb_requirements_file = "/tmp/env/requirements.txt"
+
         files.update(super().get_build_script_files())
         return files
 

repo2docker/buildpacks/conda/environment.frozen.yml

@@ -1,133 +0,0 @@
-# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2021-02-22 12:26:46 UTC
-name: r2d
-channels:
-  - conda-forge
-  - defaults
-  - conda-forge/label/broken
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=1_gnu
-  - alembic=1.5.5=pyhd8ed1ab_0
-  - anyio=2.1.0=py37h89c1867_0
-  - argon2-cffi=20.1.0=py37h8f50634_2
-  - async_generator=1.10=py_0
-  - attrs=20.3.0=pyhd3deb0d_0
-  - babel=2.9.0=pyhd3deb0d_0
-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=py_2
-  - backports.functools_lru_cache=1.6.1=py_0
-  - bleach=3.3.0=pyh44b312d_0
-  - blinker=1.4=py_1
-  - brotlipy=0.7.0=py37hb5d75c8_1001
-  - c-ares=1.17.1=h36c2ea0_0
-  - ca-certificates=2020.12.5=ha878542_0
-  - certifi=2020.12.5=py37h89c1867_1
-  - certipy=0.1.3=py_0
-  - cffi=1.14.5=py37hc58025e_0
-  - chardet=4.0.0=py37h89c1867_1
-  - cryptography=3.4.4=py37hf1a17b8_0
-  - decorator=4.4.2=py_0
-  - defusedxml=0.6.0=py_0
-  - entrypoints=0.3=py37hc8dfbb8_1002
-  - idna=2.10=pyh9f0ad1d_0
-  - importlib-metadata=3.4.0=py37h89c1867_0
-  - importlib_metadata=3.4.0=hd8ed1ab_0
-  - ipykernel=5.5.0=py37h888b3d9_1
-  - ipython=7.20.0=py37h888b3d9_2
-  - ipython_genutils=0.2.0=py_1
-  - ipywidgets=7.6.3=pyhd3deb0d_0
-  - jedi=0.18.0=py37h89c1867_2
-  - jinja2=2.11.3=pyh44b312d_0
-  - json5=0.9.5=pyh9f0ad1d_0
-  - jsonschema=3.2.0=py37hc8dfbb8_1
-  - jupyter-offlinenotebook=0.2.1=pyhd8ed1ab_0
-  - jupyter-resource-usage=0.5.1=pyhd8ed1ab_0
-  - jupyter_client=6.1.11=pyhd8ed1ab_1
-  - jupyter_core=4.7.1=py37h89c1867_0
-  - jupyter_server=1.4.0=py37h89c1867_0
-  - jupyter_telemetry=0.1.0=pyhd8ed1ab_1
-  - jupyterhub-base=1.3.0=py37h89c1867_0
-  - jupyterhub-singleuser=1.3.0=py37h89c1867_0
-  - jupyterlab=3.0.7=pyhd8ed1ab_0
-  - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
-  - jupyterlab_server=2.3.0=pyhd8ed1ab_0
-  - jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
-  - krb5=1.17.2=h926e7f8_0
-  - ld_impl_linux-64=2.35.1=hea4e1c9_2
-  - libcurl=7.71.1=hcdd3856_8
-  - libedit=3.1.20191231=he28a2e2_2
-  - libev=4.33=h516909a_1
-  - libffi=3.3=h58526e2_2
-  - libgcc-ng=9.3.0=h2828fa1_18
-  - libgomp=9.3.0=h2828fa1_18
-  - libnghttp2=1.43.0=h812cca2_0
-  - libsodium=1.0.18=h516909a_1
-  - libssh2=1.9.0=hab1572f_5
-  - libstdcxx-ng=9.3.0=h6de172a_18
-  - mako=1.1.4=pyh44b312d_0
-  - markupsafe=1.1.1=py37h5e8e339_3
-  - mistune=0.8.4=py37h5e8e339_1003
-  - nbclassic=0.2.6=pyhd8ed1ab_0
-  - nbclient=0.5.2=pyhd8ed1ab_0
-  - nbconvert=6.0.7=py37h89c1867_3
-  - nbformat=5.1.2=pyhd8ed1ab_1
-  - ncurses=6.2=h58526e2_4
-  - nest-asyncio=1.4.3=pyhd8ed1ab_0
-  - notebook=6.2.0=py37h89c1867_0
-  - nteract_on_jupyter=2.1.3=py_0
-  - oauthlib=3.0.1=py_0
-  - openssl=1.1.1j=h7f98852_0
-  - packaging=20.9=pyh44b312d_0
-  - pamela=1.0.0=py_0
-  - pandoc=2.11.4=h7f98852_0
-  - pandocfilters=1.4.2=py_1
-  - parso=0.8.1=pyhd8ed1ab_0
-  - pexpect=4.8.0=py37hc8dfbb8_1
-  - pickleshare=0.7.5=py37hc8dfbb8_1002
-  - pip=21.0.1=pyhd8ed1ab_0
-  - prometheus_client=0.9.0=pyhd3deb0d_0
-  - prompt-toolkit=3.0.16=pyha770c72_0
-  - psutil=5.8.0=py37h5e8e339_1
-  - ptyprocess=0.7.0=pyhd3deb0d_0
-  - pycparser=2.20=pyh9f0ad1d_2
-  - pycurl=7.43.0.6=py37h88a64d2_1
-  - pygments=2.8.0=pyhd8ed1ab_0
-  - pyjwt=2.0.1=pyhd8ed1ab_0
-  - pyopenssl=20.0.1=pyhd8ed1ab_0
-  - pyparsing=2.4.7=pyh9f0ad1d_0
-  - pyrsistent=0.17.3=py37h5e8e339_2
-  - pysocks=1.7.1=py37h89c1867_3
-  - python=3.7.10=hffdb5ce_100_cpython
-  - python-dateutil=2.8.1=py_0
-  - python-editor=1.0.4=py_0
-  - python-json-logger=2.0.1=pyh9f0ad1d_0
-  - python_abi=3.7=1_cp37m
-  - pytz=2021.1=pyhd8ed1ab_0
-  - pyzmq=22.0.3=py37h499b945_0
-  - readline=8.0=he28a2e2_2
-  - requests=2.25.1=pyhd3deb0d_0
-  - ruamel.yaml=0.16.12=py37h5e8e339_2
-  - ruamel.yaml.clib=0.2.2=py37h5e8e339_2
-  - send2trash=1.5.0=py_0
-  - setuptools=49.6.0=py37h89c1867_3
-  - six=1.15.0=pyh9f0ad1d_0
-  - sniffio=1.2.0=py37h89c1867_1
-  - sqlalchemy=1.3.23=py37h5e8e339_0
-  - sqlite=3.34.0=h74cdb3f_0
-  - terminado=0.9.2=py37h89c1867_0
-  - testpath=0.4.4=py_0
-  - tk=8.6.10=hed695b0_1
-  - tornado=6.1=py37h5e8e339_1
-  - traitlets=5.0.5=py_0
-  - typing_extensions=3.7.4.3=py_0
-  - urllib3=1.26.3=pyhd8ed1ab_0
-  - wcwidth=0.2.5=pyh9f0ad1d_2
-  - webencodings=0.5.1=py_1
-  - wheel=0.36.2=pyhd3deb0d_0
-  - widgetsnbextension=3.5.1=py37hc8dfbb8_4
-  - xz=5.2.5=h516909a_1
-  - zeromq=4.3.4=h9c3ff4c_0
-  - zipp=3.4.0=py_0
-  - zlib=1.2.11=h516909a_1010
-prefix: /opt/conda/envs/r2d

repo2docker/buildpacks/conda/environment.lock

@@ -0,0 +1,129 @@
+# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
+# Frozen on 2021-03-03 11:01:09 UTC
+# platform: linux-64
+# env_hash: 0c8bbd1723a38dd480d9b0965600a23fe2863608bb7d09a95be9649702b038ff
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2020.12.5-ha878542_0.tar.bz2#7eb5d4ffeee663caa1635cd67071bc1b
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.35.1-hea4e1c9_2.tar.bz2#83610dba766a186bdc7a116053b782a4
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-9.3.0-h6de172a_18.tar.bz2#2f03cd1e5c966d4af5822c7ae089ab03
+https://conda.anaconda.org/conda-forge/linux-64/pandoc-2.11.4-h7f98852_0.tar.bz2#1c827fa4db40e5e92c2619ba8fe30500
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-9.3.0-h2828fa1_18.tar.bz2#fc7a2a7e6a741c8afdd764715ac7039d
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repo2docker/buildpacks/conda/environment.py-2.7.frozen.yml

@@ -1,59 +0,0 @@
-# AUTO GENERATED FROM environment.py-2.7.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2021-02-22 12:21:22 UTC
-name: r2d
-channels:
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-  - defaults
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-prefix: /opt/conda/envs/r2d

repo2docker/buildpacks/conda/environment.py-2.7.lock

@@ -0,0 +1,55 @@
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+https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.8.1-py_0.tar.bz2#0d0150ed9c2d25817f5324108d3f7571
+https://conda.anaconda.org/conda-forge/linux-64/pyzmq-19.0.0-py27h76efe43_1.tar.bz2#0f578fd2966e4b2b910ffb3d39951645
+https://conda.anaconda.org/conda-forge/linux-64/scandir-1.10.0-py27hdf8410d_1.tar.bz2#bfaf4b51772c5904b696ce7d68731397
+https://conda.anaconda.org/conda-forge/noarch/singledispatch-3.6.1-pyh44b312d_0.tar.bz2#97dbbff78f872e5eb30a57c050cc4bba
+https://conda.anaconda.org/conda-forge/linux-64/entrypoints-0.3-py27h8c360ce_1001.tar.bz2#60366d5225a69edbfcc71572b099ddde
+https://conda.anaconda.org/conda-forge/linux-64/pathlib2-2.3.5-py27h8c360ce_1.tar.bz2#5334600914183898c9e7610d894e49e3
+https://conda.anaconda.org/conda-forge/linux-64/setuptools-44.0.0-py27_0.tar.bz2#a1dcb0ca393c777d0611faf5b86602be
+https://conda.anaconda.org/conda-forge/linux-64/tornado-5.1.1-py27h14c3975_1000.tar.bz2#adf3de0f4bc56b631b63e5b5dc0a8886
+https://conda.anaconda.org/conda-forge/linux-64/traitlets-4.3.3-py27h8c360ce_1.tar.bz2#1e13e5ecf3cab787df71dc0c77563dce
+https://conda.anaconda.org/conda-forge/linux-64/jupyter_core-4.6.3-py27h8c360ce_1.tar.bz2#1ea743b19d7f4e758b0a385fe9a1ef4b
+https://conda.anaconda.org/conda-forge/linux-64/pickleshare-0.7.5-py27h8c360ce_1001.tar.bz2#93586047c34842372ae2c1ed5fc9edbf
+https://conda.anaconda.org/conda-forge/noarch/pip-20.1.1-pyh9f0ad1d_0.tar.bz2#cd67a20c73ff2514cf5f34cae28fc867
+https://conda.anaconda.org/conda-forge/noarch/pygments-2.5.2-py_0.tar.bz2#c48719b941c60b26add57de2b014ef96
+https://conda.anaconda.org/conda-forge/linux-64/jupyter_client-5.3.4-py27_1.tar.bz2#ec6099141189dfae14367478d3e96fa9
+https://conda.anaconda.org/conda-forge/linux-64/prompt_toolkit-1.0.15-py27_0.tar.bz2#e64d8ff5a16afcea0dff046bc837f6db
+https://conda.anaconda.org/conda-forge/linux-64/ipython-5.8.0-py27_1.tar.bz2#b95b11ff25dde76c6fa0c5620a8e90ad
+https://conda.anaconda.org/conda-forge/linux-64/ipykernel-4.8.2-py27_0.tar.bz2#18141b1342f87e1607c5b389c2c12a81

repo2docker/buildpacks/conda/environment.py-2.7.yml

@@ -1,4 +1,7 @@
+channels:
+- conda-forge
 dependencies:
 - python=2.7.*
+- pip
 - ipykernel==4.8.2
 - wcwidth==0.1.9

repo2docker/buildpacks/conda/environment.py-3.5.frozen.yml

@@ -1,86 +0,0 @@
-# py3.5 conda packages are no longer being updated as of 12/2018
-# this file is hand-maintained now
-# and should only receive security fixes, no new features
-name: r2d
-channels:
-  - conda-forge
-  - defaults
-  - conda-forge/label/broken
-dependencies:
-  - backcall=0.1.0=py_0
-  - bleach=3.0.2=py_0
-  - bzip2=1.0.6=h470a237_2
-  - ca-certificates=2018.10.15=ha4d7672_0
-  - certifi=2018.8.24=py35_1001
-  - decorator=4.3.0=py_0
-  - defusedxml=0.5.0=py_1
-  - entrypoints=0.2.3=py35_2
-  - gmp=6.1.2=hfc679d8_0
-  - ipykernel=5.1.0=pyh24bf2e0_0
-  - ipython=7.0.1=py35h24bf2e0_0
-  - ipython_genutils=0.2.0=py_1
-  - ipywidgets=7.2.1=py35_1
-  - jedi=0.12.1=py35_0
-  - jinja2=2.10=py_1
-  - jsonschema=2.6.0=py35_2
-  - jupyter_client=5.2.3=py_1
-  - jupyter_core=4.4.0=py_0
-  - jupyterlab=0.34.9=py35_0
-  - jupyterlab_launcher=0.13.1=py_2
-  - libffi=3.2.1=hfc679d8_5
-  - libgcc-ng=7.2.0=hdf63c60_3
-  - libsodium=1.0.16=h470a237_1
-  - libstdcxx-ng=7.2.0=hdf63c60_3
-  - markupsafe=1.0=py35h470a237_1
-  - mistune=0.8.3=py35h470a237_2
-  - nbconvert=5.4.0=1
-  - nbformat=4.4.0=py_1
-  - ncurses=6.1=hfc679d8_1
-  - openssl=1.0.2p=h470a237_1
-  - pandoc=1.19.2=0
-  - pandocfilters=1.4.2=py_1
-  - parso=0.3.1=py_0
-  - pexpect=4.6.0=py35_0
-  - pickleshare=0.7.5=py35_0
-  - pip=18.0=py35_1001
-  - prometheus_client=0.4.2=py_0
-  - prompt_toolkit=2.0.7=py_0
-  - ptyprocess=0.6.0=py35_1000
-  - pygments=2.2.0=py_1
-  - python=3.5.5=h5001a0f_2
-  - python-dateutil=2.7.5=py_0
-  - pyzmq=17.1.2=py35hae99301_0
-  - readline=7.0=haf1bffa_1
-  - send2trash=1.5.0=py_0
-  - setuptools=40.4.3=py35_0
-  - simplegeneric=0.8.1=py_1
-  - six=1.11.0=py35_1
-  - sqlite=3.25.3=hb1c47c0_0
-  - terminado=0.8.1=py35_1
-  - testpath=0.3.1=py35_1
-  - tk=8.6.9=ha92aebf_0
-  - tornado=5.1.1=py35h470a237_0
-  - traitlets=4.3.2=py35_0
-  - wcwidth=0.1.7=py_1
-  - webencodings=0.5.1=py_1
-  - wheel=0.32.0=py35_1000
-  - widgetsnbextension=3.2.1=py35_1
-  - xz=5.2.4=h470a237_1
-  - zeromq=4.2.5=hfc679d8_6
-  - zlib=1.2.11=h470a237_3
-  - pip:
-    - alembic==1.0.3
-    - async-generator==1.10
-    - chardet==3.0.4
-    - idna==2.7
-    - jupyterhub==0.9.4
-    - mako==1.0.7
-    - notebook==5.7.8
-    - nteract-on-jupyter==1.9.6
-    - pamela==0.3.0
-    - python-editor==1.0.3
-    - python-oauth2==1.1.0
-    - requests==2.20.1
-    - sqlalchemy==1.2.14
-    - urllib3==1.24.1
-prefix: /opt/conda/envs/r2d

repo2docker/buildpacks/conda/environment.py-3.5.lock

@@ -0,0 +1,67 @@
+# py3.5 conda packages are no longer being updated as of 12/2018
+# this file is hand-maintained now
+# and should only receive security fixes, no new features
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-main.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2018.10.15-ha4d7672_0.tar.bz2
+https://repo.anaconda.com/pkgs/main/linux-64/libstdcxx-ng-7.2.0-hdf63c60_3.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libgcc-ng-7.2.0-hdf63c60_3.conda
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.6-h470a237_2.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/gmp-6.1.2-hfc679d8_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.2.1-hfc679d8_5.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/libsodium-1.0.16-h470a237_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.1-hfc679d8_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/openssl-1.0.2p-h470a237_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.4-h470a237_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.11-h470a237_3.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/pandoc-1.19.2-0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/readline-7.0-haf1bffa_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.9-ha92aebf_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/zeromq-4.2.5-hfc679d8_6.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.25.3-hb1c47c0_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/python-3.5.5-h5001a0f_2.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/backcall-0.1.0-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/certifi-2018.8.24-py35_1001.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/decorator-4.3.0-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/defusedxml-0.5.0-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/entrypoints-0.2.3-py35_2.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/ipython_genutils-0.2.0-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/jsonschema-2.6.0-py35_2.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/markupsafe-1.0-py35h470a237_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/mistune-0.8.3-py35h470a237_2.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/pandocfilters-1.4.2-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/parso-0.3.1-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/pickleshare-0.7.5-py35_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/prometheus_client-0.4.2-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/ptyprocess-0.6.0-py35_1000.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/pyzmq-17.1.2-py35hae99301_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/send2trash-1.5.0-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/simplegeneric-0.8.1-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/six-1.11.0-py35_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/testpath-0.3.1-py35_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/tornado-5.1.1-py35h470a237_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/wcwidth-0.1.7-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/webencodings-0.5.1-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/jedi-0.12.1-py35_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/pexpect-4.6.0-py35_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.7.5-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/setuptools-40.4.3-py35_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/terminado-0.8.1-py35_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/traitlets-4.3.2-py35_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/bleach-3.0.2-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/jinja2-2.10-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/jupyter_core-4.4.0-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/pygments-2.2.0-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/wheel-0.32.0-py35_1000.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/jupyter_client-5.2.3-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/nbformat-4.4.0-py_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/pip-18.0-py35_1001.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/prompt_toolkit-2.0.7-py_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/ipython-7.0.1-py35h24bf2e0_0.tar.bz2
+https://conda.anaconda.org/conda-forge/label/broken/noarch/nbconvert-5.4.0-1.tar.bz2
+https://conda.anaconda.org/conda-forge/label/broken/noarch/ipykernel-5.1.0-pyh24bf2e0_0.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/notebook-5.7.0-py35_0.tar.bz2
+https://conda.anaconda.org/conda-forge/noarch/jupyterlab_launcher-0.13.1-py_2.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/widgetsnbextension-3.2.1-py35_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/ipywidgets-7.2.1-py35_1.tar.bz2
+https://conda.anaconda.org/conda-forge/linux-64/jupyterlab-0.34.9-py35_0.tar.bz2

repo2docker/buildpacks/conda/environment.py-3.6.frozen.yml

@@ -1,136 +0,0 @@
-# AUTO GENERATED FROM environment.py-3.6.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2021-02-22 12:25:15 UTC
-name: r2d
-channels:
-  - conda-forge
-  - defaults
-  - conda-forge/label/broken
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=1_gnu
-  - alembic=1.5.5=pyhd8ed1ab_0
-  - anyio=2.1.0=py36h5fab9bb_0
-  - argon2-cffi=20.1.0=py36h8f6f2f9_2
-  - async_generator=1.10=py_0
-  - attrs=20.3.0=pyhd3deb0d_0
-  - babel=2.9.0=pyhd3deb0d_0
-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=py36_1
-  - backports.functools_lru_cache=1.6.1=py_0
-  - bleach=3.3.0=pyh44b312d_0
-  - blinker=1.4=py_1
-  - brotlipy=0.7.0=py36he6145b8_1001
-  - c-ares=1.17.1=h36c2ea0_0
-  - ca-certificates=2020.12.5=ha878542_0
-  - certifi=2020.12.5=py36h5fab9bb_1
-  - certipy=0.1.3=py_0
-  - cffi=1.14.5=py36hc120d54_0
-  - chardet=4.0.0=py36h5fab9bb_1
-  - contextvars=2.4=py_0
-  - cryptography=3.4.4=py36hc39840e_0
-  - dataclasses=0.7=py36_0
-  - decorator=4.4.2=py_0
-  - defusedxml=0.6.0=py_0
-  - entrypoints=0.3=py36h9f0ad1d_1002
-  - idna=2.10=pyh9f0ad1d_0
-  - immutables=0.15=py36h8f6f2f9_0
-  - importlib-metadata=3.4.0=py36h5fab9bb_0
-  - importlib_metadata=3.4.0=hd8ed1ab_0
-  - ipykernel=5.5.0=py36he448a4c_1
-  - ipython=7.16.1=py36he448a4c_2
-  - ipython_genutils=0.2.0=py36_0
-  - ipywidgets=7.6.3=pyhd3deb0d_0
-  - jedi=0.17.2=py36h9f0ad1d_1
-  - jinja2=2.11.3=pyh44b312d_0
-  - json5=0.9.5=pyh9f0ad1d_0
-  - jsonschema=3.2.0=py36h9f0ad1d_1
-  - jupyter-offlinenotebook=0.2.1=pyhd8ed1ab_0
-  - jupyter-resource-usage=0.5.1=pyhd8ed1ab_0
-  - jupyter_client=6.1.11=pyhd8ed1ab_1
-  - jupyter_core=4.7.1=py36h5fab9bb_0
-  - jupyter_server=1.4.0=py36h5fab9bb_0
-  - jupyter_telemetry=0.1.0=pyhd8ed1ab_1
-  - jupyterhub-base=1.3.0=py36h5fab9bb_0
-  - jupyterhub-singleuser=1.3.0=py36h5fab9bb_0
-  - jupyterlab=3.0.7=pyhd8ed1ab_0
-  - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
-  - jupyterlab_server=2.3.0=pyhd8ed1ab_0
-  - jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
-  - krb5=1.17.2=h926e7f8_0
-  - ld_impl_linux-64=2.35.1=hea4e1c9_2
-  - libcurl=7.71.1=hcdd3856_8
-  - libedit=3.1.20191231=he28a2e2_2
-  - libev=4.33=h516909a_1
-  - libffi=3.3=h58526e2_2
-  - libgcc-ng=9.3.0=h2828fa1_18
-  - libgomp=9.3.0=h2828fa1_18
-  - libnghttp2=1.43.0=h812cca2_0
-  - libsodium=1.0.18=h516909a_1
-  - libssh2=1.9.0=hab1572f_5
-  - libstdcxx-ng=9.3.0=h6de172a_18
-  - mako=1.1.4=pyh44b312d_0
-  - markupsafe=1.1.1=py36h8f6f2f9_3
-  - mistune=0.8.4=py36h8f6f2f9_1003
-  - nbclassic=0.2.6=pyhd8ed1ab_0
-  - nbclient=0.5.2=pyhd8ed1ab_0
-  - nbconvert=6.0.7=py36h5fab9bb_3
-  - nbformat=5.1.2=pyhd8ed1ab_1
-  - ncurses=6.2=h58526e2_4
-  - nest-asyncio=1.4.3=pyhd8ed1ab_0
-  - notebook=6.2.0=py36h5fab9bb_0
-  - nteract_on_jupyter=2.1.3=py_0
-  - oauthlib=3.0.1=py_0
-  - openssl=1.1.1j=h7f98852_0
-  - packaging=20.9=pyh44b312d_0
-  - pamela=1.0.0=py_0
-  - pandoc=2.11.4=h7f98852_0
-  - pandocfilters=1.4.2=py36_0
-  - parso=0.7.1=pyh9f0ad1d_0
-  - pexpect=4.8.0=py36h9f0ad1d_1
-  - pickleshare=0.7.5=py36h9f0ad1d_1002
-  - pip=21.0.1=pyhd8ed1ab_0
-  - prometheus_client=0.9.0=pyhd3deb0d_0
-  - prompt-toolkit=3.0.16=pyha770c72_0
-  - psutil=5.8.0=py36h8f6f2f9_1
-  - ptyprocess=0.7.0=pyhd3deb0d_0
-  - pycparser=2.20=pyh9f0ad1d_2
-  - pycurl=7.43.0.6=py36h66a4f8d_1
-  - pygments=2.8.0=pyhd8ed1ab_0
-  - pyjwt=2.0.1=pyhd8ed1ab_0
-  - pyopenssl=20.0.1=pyhd8ed1ab_0
-  - pyparsing=2.4.7=pyh9f0ad1d_0
-  - pyrsistent=0.17.3=py36h8f6f2f9_2
-  - pysocks=1.7.1=py36h5fab9bb_3
-  - python=3.6.13=hffdb5ce_0_cpython
-  - python-dateutil=2.8.1=py_0
-  - python-editor=1.0.4=py_0
-  - python-json-logger=2.0.1=pyh9f0ad1d_0
-  - python_abi=3.6=1_cp36m
-  - pytz=2021.1=pyhd8ed1ab_0
-  - pyzmq=22.0.3=py36h81c33ee_0
-  - readline=8.0=he28a2e2_2
-  - requests=2.25.1=pyhd3deb0d_0
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repo2docker/buildpacks/conda/environment.py-3.6.lock

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repo2docker/buildpacks/conda/environment.py-3.6.yml

@@ -1,7 +1,10 @@
 # AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
-# Generated on 2021-02-22 12:25:15 UTC
+# Generated on 2021-03-03 11:00:36 UTC
+channels:
+- conda-forge
 dependencies:
 - python=3.6.*
+- pip
 - ipywidgets==7.6.3
 - jupyter-offlinenotebook==0.2.1
 - jupyter-resource-usage==0.5.1

repo2docker/buildpacks/conda/environment.py-3.7.frozen.yml

@@ -1,133 +0,0 @@
-# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2021-02-22 12:26:46 UTC
-name: r2d
-channels:
-  - conda-forge
-  - defaults
-  - conda-forge/label/broken
-dependencies:
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-  - _openmp_mutex=4.5=1_gnu
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-  - anyio=2.1.0=py37h89c1867_0
-  - argon2-cffi=20.1.0=py37h8f50634_2
-  - async_generator=1.10=py_0
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-  - babel=2.9.0=pyhd3deb0d_0
-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=py_2
-  - backports.functools_lru_cache=1.6.1=py_0
-  - bleach=3.3.0=pyh44b312d_0
-  - blinker=1.4=py_1
-  - brotlipy=0.7.0=py37hb5d75c8_1001
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-  - ca-certificates=2020.12.5=ha878542_0
-  - certifi=2020.12.5=py37h89c1867_1
-  - certipy=0.1.3=py_0
-  - cffi=1.14.5=py37hc58025e_0
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-  - decorator=4.4.2=py_0
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-  - krb5=1.17.2=h926e7f8_0
-  - ld_impl_linux-64=2.35.1=hea4e1c9_2
-  - libcurl=7.71.1=hcdd3856_8
-  - libedit=3.1.20191231=he28a2e2_2
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-  - libgcc-ng=9.3.0=h2828fa1_18
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-  - prometheus_client=0.9.0=pyhd3deb0d_0
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-  - psutil=5.8.0=py37h5e8e339_1
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-  - send2trash=1.5.0=py_0
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-  - terminado=0.9.2=py37h89c1867_0
-  - testpath=0.4.4=py_0
-  - tk=8.6.10=hed695b0_1
-  - tornado=6.1=py37h5e8e339_1
-  - traitlets=5.0.5=py_0
-  - typing_extensions=3.7.4.3=py_0
-  - urllib3=1.26.3=pyhd8ed1ab_0
-  - wcwidth=0.2.5=pyh9f0ad1d_2
-  - webencodings=0.5.1=py_1
-  - wheel=0.36.2=pyhd3deb0d_0
-  - widgetsnbextension=3.5.1=py37hc8dfbb8_4
-  - xz=5.2.5=h516909a_1
-  - zeromq=4.3.4=h9c3ff4c_0
-  - zipp=3.4.0=py_0
-  - zlib=1.2.11=h516909a_1010
-prefix: /opt/conda/envs/r2d

repo2docker/buildpacks/conda/environment.py-3.7.lock

@@ -0,0 +1,129 @@
+# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
+# Frozen on 2021-03-03 11:01:09 UTC
+# platform: linux-64
+# env_hash: 0c8bbd1723a38dd480d9b0965600a23fe2863608bb7d09a95be9649702b038ff
+@EXPLICIT
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repo2docker/buildpacks/conda/environment.py-3.7.yml

@@ -1,7 +1,10 @@
 # AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
-# Generated on 2021-02-22 12:26:46 UTC
+# Generated on 2021-03-03 11:00:53 UTC
+channels:
+- conda-forge
 dependencies:
 - python=3.7.*
+- pip
 - ipywidgets==7.6.3
 - jupyter-offlinenotebook==0.2.1
 - jupyter-resource-usage==0.5.1

repo2docker/buildpacks/conda/environment.py-3.8.frozen.yml

@@ -1,132 +0,0 @@
-# AUTO GENERATED FROM environment.py-3.8.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2021-02-22 12:22:38 UTC
-name: r2d
-channels:
-  - conda-forge
-  - defaults
-  - conda-forge/label/broken
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
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-  - async_generator=1.10=py_0
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-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=py_2
-  - backports.functools_lru_cache=1.6.1=py_0
-  - bleach=3.3.0=pyh44b312d_0
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-  - brotlipy=0.7.0=py38h497a2fe_1001
-  - c-ares=1.17.1=h36c2ea0_0
-  - ca-certificates=2020.12.5=ha878542_0
-  - certifi=2020.12.5=py38h578d9bd_1
-  - certipy=0.1.3=py_0
-  - cffi=1.14.5=py38ha65f79e_0
-  - chardet=4.0.0=py38h578d9bd_1
-  - cryptography=3.4.4=py38h3e25421_0
-  - decorator=4.4.2=py_0
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-  - jupyter_client=6.1.11=pyhd8ed1ab_1
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-  - jupyter_server=1.4.0=py38h578d9bd_0
-  - jupyter_telemetry=0.1.0=pyhd8ed1ab_1
-  - jupyterhub-base=1.3.0=py38h578d9bd_0
-  - jupyterhub-singleuser=1.3.0=py38h578d9bd_0
-  - jupyterlab=3.0.7=pyhd8ed1ab_0
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-  - jupyterlab_server=2.3.0=pyhd8ed1ab_0
-  - jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
-  - krb5=1.17.2=h926e7f8_0
-  - ld_impl_linux-64=2.35.1=hea4e1c9_2
-  - libcurl=7.71.1=hcdd3856_8
-  - libedit=3.1.20191231=he28a2e2_2
-  - libev=4.33=h516909a_1
-  - libffi=3.3=h58526e2_2
-  - libgcc-ng=9.3.0=h2828fa1_18
-  - libgomp=9.3.0=h2828fa1_18
-  - libnghttp2=1.43.0=h812cca2_0
-  - libsodium=1.0.18=h516909a_1
-  - libssh2=1.9.0=hab1572f_5
-  - libstdcxx-ng=9.3.0=h6de172a_18
-  - mako=1.1.4=pyh44b312d_0
-  - markupsafe=1.1.1=py38h497a2fe_3
-  - mistune=0.8.4=py38h497a2fe_1003
-  - nbclassic=0.2.6=pyhd8ed1ab_0
-  - nbclient=0.5.2=pyhd8ed1ab_0
-  - nbconvert=6.0.7=py38h578d9bd_3
-  - nbformat=5.1.2=pyhd8ed1ab_1
-  - ncurses=6.2=h58526e2_4
-  - nest-asyncio=1.4.3=pyhd8ed1ab_0
-  - notebook=6.2.0=py38h578d9bd_0
-  - nteract_on_jupyter=2.1.3=py_0
-  - oauthlib=3.0.1=py_0
-  - openssl=1.1.1j=h7f98852_0
-  - packaging=20.9=pyh44b312d_0
-  - pamela=1.0.0=py_0
-  - pandoc=2.11.4=h7f98852_0
-  - pandocfilters=1.4.2=py_1
-  - parso=0.8.1=pyhd8ed1ab_0
-  - pexpect=4.8.0=py38h32f6830_1
-  - pickleshare=0.7.5=py38h32f6830_1002
-  - pip=21.0.1=pyhd8ed1ab_0
-  - prometheus_client=0.9.0=pyhd3deb0d_0
-  - prompt-toolkit=3.0.16=pyha770c72_0
-  - psutil=5.8.0=py38h497a2fe_1
-  - ptyprocess=0.7.0=pyhd3deb0d_0
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-  - pyjwt=2.0.1=pyhd8ed1ab_0
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-  - python=3.8.8=hffdb5ce_0_cpython
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-  - readline=8.0=he28a2e2_2
-  - requests=2.25.1=pyhd3deb0d_0
-  - ruamel.yaml=0.16.12=py38h497a2fe_2
-  - ruamel.yaml.clib=0.2.2=py38h497a2fe_2
-  - send2trash=1.5.0=py_0
-  - setuptools=49.6.0=py38h578d9bd_3
-  - six=1.15.0=pyh9f0ad1d_0
-  - sniffio=1.2.0=py38h578d9bd_1
-  - sqlalchemy=1.3.23=py38h497a2fe_0
-  - sqlite=3.34.0=h74cdb3f_0
-  - terminado=0.9.2=py38h578d9bd_0
-  - testpath=0.4.4=py_0
-  - tk=8.6.10=hed695b0_1
-  - tornado=6.1=py38h497a2fe_1
-  - traitlets=5.0.5=py_0
-  - urllib3=1.26.3=pyhd8ed1ab_0
-  - wcwidth=0.2.5=pyh9f0ad1d_2
-  - webencodings=0.5.1=py_1
-  - wheel=0.36.2=pyhd3deb0d_0
-  - widgetsnbextension=3.5.1=py38h578d9bd_4
-  - xz=5.2.5=h516909a_1
-  - zeromq=4.3.4=h9c3ff4c_0
-  - zipp=3.4.0=py_0
-  - zlib=1.2.11=h516909a_1010
-prefix: /opt/conda/envs/r2d

repo2docker/buildpacks/conda/environment.py-3.8.lock

@@ -0,0 +1,128 @@
+# AUTO GENERATED FROM environment.py-3.8.yml, DO NOT MANUALLY MODIFY
+# Frozen on 2021-03-03 11:01:27 UTC
+# platform: linux-64
+# env_hash: d20cbe90d1613b4bf7cacf18315841c97dc95569fc262252fc03eba2ac577f74
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2020.12.5-ha878542_0.tar.bz2#7eb5d4ffeee663caa1635cd67071bc1b
+https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.35.1-hea4e1c9_2.tar.bz2#83610dba766a186bdc7a116053b782a4
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-9.3.0-h6de172a_18.tar.bz2#2f03cd1e5c966d4af5822c7ae089ab03
+https://conda.anaconda.org/conda-forge/linux-64/pandoc-2.11.4-h7f98852_0.tar.bz2#1c827fa4db40e5e92c2619ba8fe30500
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repo2docker/buildpacks/conda/environment.py-3.8.yml

@@ -1,7 +1,10 @@
 # AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
-# Generated on 2021-02-22 12:22:38 UTC
+# Generated on 2021-03-03 11:01:09 UTC
+channels:
+- conda-forge
 dependencies:
 - python=3.8.*
+- pip
 - ipywidgets==7.6.3
 - jupyter-offlinenotebook==0.2.1
 - jupyter-resource-usage==0.5.1

repo2docker/buildpacks/conda/environment.py-3.9.frozen.yml

@@ -1,133 +0,0 @@
-# AUTO GENERATED FROM environment.py-3.9.yml, DO NOT MANUALLY MODIFY
-# Frozen on 2021-02-22 12:28:32 UTC
-name: r2d
-channels:
-  - conda-forge
-  - defaults
-  - conda-forge/label/broken
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=1_gnu
-  - alembic=1.5.5=pyhd8ed1ab_0
-  - anyio=2.1.0=py39hf3d152e_0
-  - argon2-cffi=20.1.0=py39hbd71b63_2
-  - async_generator=1.10=py_0
-  - attrs=20.3.0=pyhd3deb0d_0
-  - babel=2.9.0=pyhd3deb0d_0
-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=py_2
-  - backports.functools_lru_cache=1.6.1=py_0
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+https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-3.7.0-hd8ed1ab_0.tar.bz2#d9eb59a3cafc09132ea0932247a20e39
+https://conda.anaconda.org/conda-forge/linux-64/jupyter_core-4.7.1-py39hf3d152e_0.tar.bz2#6bddb50072e5c769100295b967b7b212
+https://conda.anaconda.org/conda-forge/noarch/mako-1.1.4-pyh44b312d_0.tar.bz2#1b618b99d151e88ba0fabff9fa2b2d0b
+https://conda.anaconda.org/conda-forge/linux-64/setuptools-49.6.0-py39hf3d152e_3.tar.bz2#4397280abb201d7adff59099e12e7ddd
+https://conda.anaconda.org/conda-forge/linux-64/terminado-0.9.2-py39hf3d152e_0.tar.bz2#be4a43825c2a6ca3638cbdcceeb7977d
+https://conda.anaconda.org/conda-forge/noarch/alembic-1.5.5-pyhd8ed1ab_0.tar.bz2#e75d3f582e77f87bc5e38fd25c861724
+https://conda.anaconda.org/conda-forge/noarch/backports.functools_lru_cache-1.6.1-py_0.tar.bz2#d36df15eaef96549ce6231e3088fba54
+https://conda.anaconda.org/conda-forge/noarch/bleach-3.3.0-pyh44b312d_0.tar.bz2#abf6b76c39358ca36ca706c46f054f2a
+https://conda.anaconda.org/conda-forge/noarch/jinja2-2.11.3-pyh44b312d_0.tar.bz2#1d4c3605d85a3655b1595e0694138eb6
+https://conda.anaconda.org/conda-forge/noarch/jsonschema-3.2.0-py_2.tar.bz2#a17aa962de6145d08e1008cb37c20161
+https://conda.anaconda.org/conda-forge/noarch/jupyter_client-6.1.11-pyhd8ed1ab_1.tar.bz2#0fcd80df6d4e0558754c39453ffa3110
+https://conda.anaconda.org/conda-forge/noarch/oauthlib-3.0.1-py_0.tar.bz2#faaf2a8fd1cddecbf1818fcf0ed3a3b6
+https://conda.anaconda.org/conda-forge/noarch/pip-21.0.1-pyhd8ed1ab_0.tar.bz2#849477e10d78cbc283c78fd53bfbb567
+https://conda.anaconda.org/conda-forge/noarch/pygments-2.8.0-pyhd8ed1ab_0.tar.bz2#226cd14ba0554ca2648fecd11090f473
+https://conda.anaconda.org/conda-forge/noarch/pyopenssl-20.0.1-pyhd8ed1ab_0.tar.bz2#92371c25994d0f5d28a01c1fb75ebf86
+https://conda.anaconda.org/conda-forge/linux-64/ruamel.yaml-0.16.12-py39h3811e60_2.tar.bz2#a8821bb0a052ba053aa74108fac611a8
+https://conda.anaconda.org/conda-forge/noarch/certipy-0.1.3-py_0.tar.bz2#23486713ef5712923e7c57cae609b22e
+https://conda.anaconda.org/conda-forge/noarch/jupyter_telemetry-0.1.0-pyhd8ed1ab_1.tar.bz2#bb9ebdb6d5aa2622484aff1faceee181
+https://conda.anaconda.org/conda-forge/noarch/jupyterlab_pygments-0.1.2-pyh9f0ad1d_0.tar.bz2#2cbd910890bb328e8959246a1e16fac7
+https://conda.anaconda.org/conda-forge/noarch/nbformat-5.1.2-pyhd8ed1ab_1.tar.bz2#9633dbb668ac1f9266427672816899dc
+https://conda.anaconda.org/conda-forge/noarch/urllib3-1.26.3-pyhd8ed1ab_0.tar.bz2#25573e57774dd54cfa848e5dd44503ed
+https://conda.anaconda.org/conda-forge/noarch/wcwidth-0.2.5-pyh9f0ad1d_2.tar.bz2#5266fcd697043c59621fda522b3d78ee
+https://conda.anaconda.org/conda-forge/noarch/nbclient-0.5.3-pyhd8ed1ab_0.tar.bz2#67f12831640fde52fe9be1bbc6b699e7
+https://conda.anaconda.org/conda-forge/noarch/prompt-toolkit-3.0.16-pyha770c72_0.tar.bz2#1a7cec3da4a94cd23d3de4155bff4941
+https://conda.anaconda.org/conda-forge/noarch/requests-2.25.1-pyhd3deb0d_0.tar.bz2#ae687aba31a1c400192a86a2e993ffdc
+https://conda.anaconda.org/conda-forge/linux-64/ipython-7.21.0-py39hef51801_0.tar.bz2#9ff1c412845b7c4919ae9d0925cb1e2c
+https://conda.anaconda.org/conda-forge/linux-64/jupyterhub-base-1.3.0-py39hf3d152e_1.tar.bz2#1bbac4988e7d073cf19c33c2edee8b20
+https://conda.anaconda.org/conda-forge/linux-64/nbconvert-6.0.7-py39hf3d152e_3.tar.bz2#5f914e1113c7a926798c7659efbcd6a3
+https://conda.anaconda.org/conda-forge/linux-64/ipykernel-5.5.0-py39hef51801_1.tar.bz2#7fdf48a376b83e4511b550410482c806
+https://conda.anaconda.org/conda-forge/linux-64/jupyter_server-1.4.1-py39hf3d152e_0.tar.bz2#e5e99c96e60344439ad559e9fa9111e5
+https://conda.anaconda.org/conda-forge/noarch/jupyterlab_server-2.3.0-pyhd8ed1ab_0.tar.bz2#e1ab43655ba7ede6917e2daa37c7b217
+https://conda.anaconda.org/conda-forge/linux-64/notebook-6.2.0-py39hf3d152e_0.tar.bz2#b41aa687fbe881f4941707dc8646bdfc
+https://conda.anaconda.org/conda-forge/noarch/jupyter-offlinenotebook-0.2.1-pyhd8ed1ab_0.tar.bz2#5e0974a4547a2b82667f65a6498c4145
+https://conda.anaconda.org/conda-forge/noarch/jupyter-resource-usage-0.5.1-pyhd8ed1ab_0.tar.bz2#b776d2ff20c535f74e27207267c6641a
+https://conda.anaconda.org/conda-forge/linux-64/jupyterhub-singleuser-1.3.0-py39hf3d152e_1.tar.bz2#3016148a2ac3dac786b341d9fce90a07
+https://conda.anaconda.org/conda-forge/noarch/nbclassic-0.2.6-pyhd8ed1ab_0.tar.bz2#49be35e31b49012ea91fcd667ebdf4ad
+https://conda.anaconda.org/conda-forge/noarch/nteract_on_jupyter-2.1.3-py_0.tar.bz2#1430ccd983ae6b161e2fbf4377965f7a
+https://conda.anaconda.org/conda-forge/linux-64/widgetsnbextension-3.5.1-py39hf3d152e_4.tar.bz2#ae54c7d751b678c0021929892d598ecd
+https://conda.anaconda.org/conda-forge/noarch/ipywidgets-7.6.3-pyhd3deb0d_0.tar.bz2#536a9ed6d9e740f2b83d1a3c388e4388
+https://conda.anaconda.org/conda-forge/noarch/jupyterlab-3.0.7-pyhd8ed1ab_0.tar.bz2#127cb0160dcd6efedfc1614a4a36fdcc

repo2docker/buildpacks/conda/environment.py-3.9.yml

@@ -1,7 +1,10 @@
 # AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
-# Generated on 2021-02-22 12:28:32 UTC
+# Generated on 2021-03-03 11:01:27 UTC
+channels:
+- conda-forge
 dependencies:
 - python=3.9.*
+- pip
 - ipywidgets==7.6.3
 - jupyter-offlinenotebook==0.2.1
 - jupyter-resource-usage==0.5.1

repo2docker/buildpacks/conda/environment.yml

@@ -1,5 +1,8 @@
+channels:
+  - conda-forge
 dependencies:
   - python=3.7
+  - pip
   - ipywidgets==7.6.3
   - jupyter-offlinenotebook==0.2.1
   - jupyter-resource-usage==0.5.1

repo2docker/buildpacks/conda/freeze.py

@@ -2,7 +2,7 @@
 """
 Freeze the conda environment.yml
 
-It runs the freeze in a continuumio/miniconda3 image to ensure portability
+Using conda-lock
 
 Usage:
 
@@ -19,30 +19,22 @@ import sys
 from ruamel.yaml import YAML
 
 
-DOCKER_IMAGE = "condaforge/mambaforge:4.9.2-5"
-# set mamba and/or conda versions
-# if needed to differ from what's in the image
-MAMBA_VERSION = ""
-CONDA_VERSION = ""
-
 HERE = pathlib.Path(os.path.dirname(os.path.abspath(__file__)))
 
 ENV_FILE = HERE / "environment.yml"
-FROZEN_FILE = os.path.splitext(ENV_FILE)[0] + ".frozen.yml"
+FROZEN_FILE = os.path.splitext(ENV_FILE)[0] + ".lock"
 
 ENV_FILE_T = HERE / "environment.py-{py}.yml"
-FROZEN_FILE_T = os.path.splitext(ENV_FILE_T)[0] + ".frozen.yml"
 
 yaml = YAML(typ="rt")
 
 
-def freeze(env_file, frozen_file):
-    """Freeze a conda environment.yml
+def freeze(env_file, frozen_file, platform="linux-64"):
+    """Freeze a conda environment
 
-    By running in docker:
+    By running:
 
-        mamba env create
-        mamba env export
+        conda-lock --mamba --platform=linux-64 -f environment.yml
 
     Result will be stored in frozen_file
     """
@@ -58,43 +50,32 @@ def freeze(env_file, frozen_file):
                 return
     print(f"Freezing {env_file} -> {frozen_file}")
 
+    # FIXME: conda-lock 0.8 requires {platform} in template
+    # https://github.com/conda-incubator/conda-lock/pull/78
+    frozen_template = str(frozen_dest) + ".{platform}"
+    frozen_tempfile = pathlib.Path(frozen_template.format(platform=platform))
+
+    check_call(
+        [
+            "conda-lock",
+            # FIXME: adopt micromamba after ordering is fixed
+            # https://github.com/conda-incubator/conda-lock/issues/79
+            "--mamba",
+            f"--platform={platform}",
+            f"--filename-template={frozen_template}",
+            f"--file={env_file}",
+        ]
+    )
+
     with frozen_dest.open("w") as f:
         f.write(
             f"# AUTO GENERATED FROM {env_file.relative_to(HERE)}, DO NOT MANUALLY MODIFY\n"
         )
         f.write(f"# Frozen on {datetime.utcnow():%Y-%m-%d %H:%M:%S UTC}\n")
+        with frozen_tempfile.open() as temp:
+            f.write(temp.read())
 
-    check_call(
-        [
-            "docker",
-            "run",
-            "--rm",
-            "-v" f"{HERE}:/r2d",
-            "-it",
-            DOCKER_IMAGE,
-            "sh",
-            "-c",
-            "; ".join(
-                [
-                    "set -ex",
-                    "conda config --set channel_priority strict",
-                    "conda config --add channels conda-forge",
-                    f"mamba install -yq -S mamba={MAMBA_VERSION}"
-                    if MAMBA_VERSION
-                    else "true",
-                    f"mamba install -yq -S conda={CONDA_VERSION}"
-                    if CONDA_VERSION
-                    else "true",
-                    "conda config --system --set auto_update_conda false",
-                    f"mamba env create -v -f /r2d/{env_file.relative_to(HERE)} -n r2d",
-                    # add conda-forge broken channel as lowest priority in case
-                    # any of our frozen packages are marked as broken after freezing
-                    "conda config --append channels conda-forge/label/broken",
-                    f"mamba env export -n r2d >> /r2d/{frozen_file.relative_to(HERE)}",
-                ]
-            ),
-        ]
-    )
+    os.remove(frozen_tempfile)
 
 
 def set_python(py_env_file, py):
@@ -131,7 +112,7 @@ if __name__ == "__main__":
     for py in pys:
         env_file = pathlib.Path(str(ENV_FILE_T).format(py=py))
         set_python(env_file, py)
-        frozen_file = pathlib.Path(os.path.splitext(env_file)[0] + ".frozen.yml")
+        frozen_file = pathlib.Path(os.path.splitext(env_file)[0] + ".lock")
         freeze(env_file, frozen_file)
         if py == default_py:
             shutil.copy(frozen_file, FROZEN_FILE)

repo2docker/buildpacks/conda/install-miniforge.bash

@@ -45,21 +45,33 @@ conda config --system --set channel_priority "flexible"
 time mamba install -y mamba==${MAMBA_VERSION}
 
 echo "installing notebook env:"
-cat /tmp/environment.yml
-time mamba env create -p ${NB_PYTHON_PREFIX} -f /tmp/environment.yml
+cat "${NB_ENVIRONMENT_FILE}"
 
+time mamba create -p ${NB_PYTHON_PREFIX} --file "${NB_ENVIRONMENT_FILE}"
+
+if [[ ! -z "${NB_REQUIREMENTS_FILE:-}" ]]; then
+    echo "installing pip requirements"
+    cat "${NB_REQUIREMENTS_FILE}"
+    ${NB_PYTHON_PREFIX}/bin/python -mpip install --no-cache --no-deps -r "${NB_REQUIREMENTS_FILE}"
+fi
 # empty conda history file,
 # which seems to result in some effective pinning of packages in the initial env,
 # which we don't intend.
 # this file must not be *removed*, however
 echo '' > ${NB_PYTHON_PREFIX}/conda-meta/history
 
-if [[ -f /tmp/kernel-environment.yml ]]; then
+if [[ ! -z "${KERNEL_ENVIRONMENT_FILE:-}" ]]; then
     # install kernel env and register kernelspec
     echo "installing kernel env:"
-    cat /tmp/kernel-environment.yml
+    cat "${KERNEL_ENVIRONMENT_FILE}"
+    time mamba create -p ${KERNEL_PYTHON_PREFIX} --file "${KERNEL_ENVIRONMENT_FILE}"
+
+    if [[ ! -z "${KERNEL_REQUIREMENTS_FILE:-}" ]]; then
+        echo "installing pip requirements for kernel"
+        cat "${KERNEL_REQUIREMENTS_FILE}"
+        ${KERNEL_PYTHON_PREFIX}/bin/python -mpip install --no-cache --no-deps -r "${KERNEL_REQUIREMENTS_FILE}"
+    fi
 
-    time mamba env create -p ${KERNEL_PYTHON_PREFIX} -f /tmp/kernel-environment.yml
     ${KERNEL_PYTHON_PREFIX}/bin/ipython kernel install --prefix "${NB_PYTHON_PREFIX}"
     echo '' > ${KERNEL_PYTHON_PREFIX}/conda-meta/history
     mamba list -p ${KERNEL_PYTHON_PREFIX}

repo2docker/buildpacks/conda/requirements.py-3.5.txt

@@ -0,0 +1,17 @@
+# pip-installed packages for Python 3.5
+# these should only be packages
+# whose versions are too new to have builds available for Python 3.5
+alembic==1.0.3
+async-generator==1.10
+chardet==3.0.4
+idna==2.7
+jupyterhub==0.9.4
+mako==1.0.7
+notebook==5.7.8
+nteract-on-jupyter==1.9.6
+pamela==0.3.0
+python-editor==1.0.3
+python-oauth2==1.1.0
+requests==2.20.1
+sqlalchemy==1.2.14
+urllib3==1.24.1