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Merge remote-tracking branch 'upstream/master' into trallard-patch-1

pull/906/head
Tania Allard 2020-06-04 12:55:27 +01:00
rodzic f550f2fad8 ebf973ab60
commit dad4972942
12 zmienionych plików z 310 dodań i 285 usunięć
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2
docs/source/config_files.rst
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@ -142,7 +142,7 @@ We use ``apt.txt``, for example, to install LaTeX in our
To install your repository like an R package, you may include a
``DESCRIPTION`` file. repo2docker installs the package and dependencies
from the ``DESCRIPTION`` by running ``devtools:install_git(".")``.
from the ``DESCRIPTION`` by running ``devtools::install_git(".")``.
You also need to have a ``runtime.txt`` file that is formatted as
``r-<YYYY>-<MM>-<DD>``, where YYYY-MM-DD is a snapshot of MRAN that will be

134
repo2docker/buildpacks/conda/environment.frozen.yml
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@ -1,5 +1,5 @@
# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
# Frozen on 2020-01-30 10:54:05 UTC
# Frozen on 2020-06-02 18:09:38 UTC
name: r2d
channels:
- conda-forge
@ -8,105 +8,109 @@ channels:
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- alembic=1.3.3=py_0
- alembic=1.4.2=pyh9f0ad1d_0
- async_generator=1.10=py_0
- attrs=19.3.0=py_0
- backcall=0.1.0=py_0
- bleach=3.1.0=py_0
- bleach=3.1.5=pyh9f0ad1d_0
- blinker=1.4=py_1
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py37_0
- brotlipy=0.7.0=py37h8f50634_1000
- ca-certificates=2020.4.5.1=hecc5488_0
- certifi=2020.4.5.1=py37hc8dfbb8_0
- certipy=0.1.3=py_0
- cffi=1.13.2=py37h8022711_0
- chardet=3.0.4=py37_1003
- cryptography=2.8=py37h72c5cf5_1
- decorator=4.4.1=py_0
- cffi=1.14.0=py37hd463f26_0
- chardet=3.0.4=py37hc8dfbb8_1006
- cryptography=2.9.2=py37hb09aad4_0
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- entrypoints=0.3=py37_1000
- idna=2.8=py37_1000
- importlib_metadata=1.5.0=py37_0
- inflect=4.0.0=py37_1
- ipykernel=5.1.4=py37h5ca1d4c_0
- ipython=7.11.1=py37h5ca1d4c_0
- entrypoints=0.3=py37hc8dfbb8_1001
- idna=2.9=py_1
- importlib-metadata=1.6.0=py37hc8dfbb8_0
- importlib_metadata=1.6.0=0
- ipykernel=5.3.0=py37h43977f1_0
- ipython=7.15.0=py37hc8dfbb8_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.5.1=py_0
- jaraco.itertools=5.0.0=py_0
- jedi=0.16.0=py37_0
- jinja2=2.11.0=py_0
- json5=0.8.5=py_0
- jsonschema=3.2.0=py37_0
- jupyter_client=5.3.4=py37_1
- jupyter_core=4.6.1=py37_0
- jupyter_telemetry=0.0.4=py_0
- jedi=0.17.0=py37hc8dfbb8_0
- jinja2=2.11.2=pyh9f0ad1d_0
- json5=0.9.0=py_0
- jsonschema=3.2.0=py37hc8dfbb8_1
- jupyter_client=6.1.3=py_0
- jupyter_core=4.6.3=py37hc8dfbb8_1
- jupyter_telemetry=0.0.5=py_0
- jupyterhub-base=1.1.0=py37_2
- jupyterhub-singleuser=1.1.0=py37_2
- jupyterlab=1.2.6=py_0
- jupyterlab_server=1.0.6=py_0
- krb5=1.16.4=h2fd8d38_0
- ld_impl_linux-64=2.33.1=h53a641e_8
- libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- jupyterlab_server=1.1.5=py_0
- krb5=1.17.1=h2fd8d38_0
- ld_impl_linux-64=2.34=h53a641e_4
- libcurl=7.69.1=hf7181ac_0
- libedit=3.1.20191231=h46ee950_0
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2
- libssh2=1.9.0=hab1572f_2
- libstdcxx-ng=9.2.0=hdf63c60_2
- mako=1.1.0=py_0
- markupsafe=1.1.1=py37h516909a_0
- mistune=0.8.4=py37h516909a_1000
- more-itertools=8.2.0=py_0
- nbconvert=5.6.1=py37_0
- nbformat=5.0.4=py_0
- markupsafe=1.1.1=py37h8f50634_1
- mistune=0.8.4=py37h8f50634_1001
- nbconvert=5.6.1=py37hc8dfbb8_1
- nbformat=5.0.6=py_0
- nbresuse=0.3.3=py_0
- ncurses=6.1=hf484d3e_1002
- notebook=6.0.3=py37_0
- notebook=6.0.3=py37hc8dfbb8_0
- nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0
- openssl=1.1.1d=h516909a_0
- openssl=1.1.1g=h516909a_0
- packaging=20.4=pyh9f0ad1d_0
- pamela=1.0.0=py_0
- pandoc=2.9.1.1=0
- pandoc=2.9.2.1=0
- pandocfilters=1.4.2=py_1
- parso=0.6.0=py_0
- pexpect=4.8.0=py37_0
- pickleshare=0.7.5=py37_1000
- pip=20.0.2=py37_0
- prometheus_client=0.7.1=py_0
- prompt_toolkit=3.0.3=py_0
- parso=0.7.0=pyh9f0ad1d_0
- pexpect=4.8.0=py37hc8dfbb8_1
- pickleshare=0.7.5=py37hc8dfbb8_1001
- pip=20.1.1=py_1
- prometheus_client=0.8.0=pyh9f0ad1d_0
- prompt-toolkit=3.0.5=py_0
- psutil=5.7.0=py37h8f50634_1
- ptyprocess=0.6.0=py_1001
- pycparser=2.19=py37_1
- pycparser=2.20=py_0
- pycurl=7.43.0.5=py37h16ce93b_0
- pygments=2.5.2=py_0
- pygments=2.6.1=py_0
- pyjwt=1.7.1=py_0
- pyopenssl=19.1.0=py37_0
- pyrsistent=0.15.7=py37h516909a_0
- pysocks=1.7.1=py37_0
- python=3.7.6=h357f687_2
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.16.0=py37h8f50634_0
- pysocks=1.7.1=py37hc8dfbb8_1
- python=3.7.6=cpython_h8356626_6
- python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0
- python-json-logger=0.1.11=py_0
- pyzmq=18.1.1=py37h1768529_0
- python_abi=3.7=1_cp37m
- pyzmq=19.0.1=py37hac76be4_0
- readline=8.0=hf8c457e_0
- requests=2.22.0=py37_1
- ruamel.yaml=0.16.6=py37h516909a_0
- ruamel.yaml.clib=0.2.0=py37h516909a_0
- requests=2.23.0=pyh8c360ce_2
- ruamel.yaml=0.16.6=py37h8f50634_1
- ruamel.yaml.clib=0.2.0=py37h8f50634_1
- send2trash=1.5.0=py_0
- setuptools=45.1.0=py37_0
- six=1.14.0=py37_0
- sqlalchemy=1.3.13=py37h516909a_0
- setuptools=47.1.1=py37hc8dfbb8_0
- six=1.15.0=pyh9f0ad1d_0
- sqlalchemy=1.3.17=py37h8f50634_0
- sqlite=3.30.1=hcee41ef_0
- terminado=0.8.3=py37_0
- terminado=0.8.3=py37hc8dfbb8_1
- testpath=0.4.4=py_0
- tk=8.6.10=hed695b0_0
- tornado=6.0.3=py37h516909a_0
- traitlets=4.3.3=py37_0
- urllib3=1.25.7=py37_0
- wcwidth=0.1.8=py_0
- tornado=6.0.4=py37h8f50634_1
- traitlets=4.3.3=py37hc8dfbb8_1
- urllib3=1.25.9=py_0
- wcwidth=0.2.3=pyh9f0ad1d_0
- webencodings=0.5.1=py_1
- wheel=0.34.1=py37_0
- wheel=0.34.2=py_1
- widgetsnbextension=3.5.1=py37_0
- xz=5.2.4=h14c3975_1001
- xz=5.2.5=h516909a_0
- zeromq=4.3.2=he1b5a44_2
- zipp=2.1.0=py_0
- zipp=3.1.0=py_0
- zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d

46
repo2docker/buildpacks/conda/environment.py-2.7.frozen.yml
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@ -1,5 +1,5 @@
# AUTO GENERATED FROM environment.py-2.7.yml, DO NOT MANUALLY MODIFY
# Frozen on 2020-01-27 12:28:36 UTC
# Frozen on 2020-06-03 20:30:54 UTC
name: r2d
channels:
- conda-forge
@ -11,47 +11,49 @@ dependencies:
- backports=1.0=py_2
- backports.shutil_get_terminal_size=1.0.0=py_3
- backports_abc=0.5=py_1
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py27_0
- configparser=3.7.3=py27_1
- decorator=4.4.1=py_0
- entrypoints=0.3=py27_1000
- enum34=1.1.6=py27_1002
- futures=3.3.0=py27_0
- ca-certificates=2020.4.5.1=hecc5488_0
- certifi=2019.11.28=py27h8c360ce_1
- configparser=3.7.3=py27h8c360ce_2
- decorator=4.4.2=py_0
- entrypoints=0.3=py27h8c360ce_1001
- enum34=1.1.10=py27h8c360ce_1
- futures=3.3.0=py27h8c360ce_1
- ipykernel=4.8.2=py27_0
- ipython=5.8.0=py27_1
- ipython_genutils=0.2.0=py_1
- jupyter_client=5.3.4=py27_1
- jupyter_core=4.6.1=py27_0
- libffi=3.2.1=he1b5a44_1006
- jupyter_core=4.6.3=py27h8c360ce_1
- ld_impl_linux-64=2.34=h53a641e_4
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0
- libstdcxx-ng=9.2.0=hdf63c60_2
- ncurses=6.1=hf484d3e_1002
- openssl=1.1.1d=h516909a_0
- pathlib2=2.3.5=py27_0
- pexpect=4.8.0=py27_0
- pickleshare=0.7.5=py27_1000
- pip=20.0.2=py27_0
- openssl=1.1.1g=h516909a_0
- pathlib2=2.3.5=py27h8c360ce_1
- pexpect=4.8.0=py27h8c360ce_1
- pickleshare=0.7.5=py27h8c360ce_1001
- pip=20.1.1=pyh9f0ad1d_0
- prompt_toolkit=1.0.15=py_1
- ptyprocess=0.6.0=py_1001
- pygments=2.5.2=py_0
- python=2.7.15=h5a48372_1009
- python=2.7.15=h5a48372_1011_cpython
- python-dateutil=2.8.1=py_0
- pyzmq=18.1.1=py27h1768529_0
- python_abi=2.7=1_cp27mu
- pyzmq=19.0.0=py27h76efe43_1
- readline=8.0=hf8c457e_0
- scandir=1.10.0=py27h516909a_0
- scandir=1.10.0=py27hdf8410d_1
- setuptools=44.0.0=py27_0
- simplegeneric=0.8.1=py_1
- singledispatch=3.4.0.3=py27_1000
- six=1.14.0=py27_0
- six=1.15.0=pyh9f0ad1d_0
- sqlite=3.30.1=hcee41ef_0
- tk=8.6.10=hed695b0_0
- tornado=5.1.1=py27h14c3975_1000
- traitlets=4.3.3=py27_0
- wcwidth=0.1.8=py_0
- wheel=0.33.6=py27_0
- traitlets=4.3.3=py27h8c360ce_1
- wcwidth=0.1.9=pyh9f0ad1d_0
- wheel=0.34.2=py_1
- zeromq=4.3.2=he1b5a44_2
- zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d

1
repo2docker/buildpacks/conda/environment.py-2.7.yml
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@ -1,3 +1,4 @@
dependencies:
- python=2.7.*
- ipykernel==4.8.2
- wcwidth==0.1.9

133
repo2docker/buildpacks/conda/environment.py-3.6.frozen.yml
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@ -1,5 +1,5 @@
# AUTO GENERATED FROM environment.py-3.6.yml, DO NOT MANUALLY MODIFY
# Frozen on 2020-01-30 10:54:21 UTC
# Frozen on 2020-06-02 18:06:52 UTC
name: r2d
channels:
- conda-forge
@ -8,104 +8,109 @@ channels:
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- alembic=1.3.3=py_0
- alembic=1.4.2=pyh9f0ad1d_0
- async_generator=1.10=py_0
- attrs=19.3.0=py_0
- backcall=0.1.0=py_0
- bleach=3.1.0=py_0
- bleach=3.1.5=pyh9f0ad1d_0
- blinker=1.4=py_1
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py36_0
- brotlipy=0.7.0=py36h8c4c3a4_1000
- ca-certificates=2020.4.5.1=hecc5488_0
- certifi=2020.4.5.1=py36h9f0ad1d_0
- certipy=0.1.3=py_0
- cffi=1.13.2=py36h8022711_0
- chardet=3.0.4=py36_1003
- cryptography=2.8=py36h72c5cf5_1
- decorator=4.4.1=py_0
- cffi=1.14.0=py36hd463f26_0
- chardet=3.0.4=py36h9f0ad1d_1006
- cryptography=2.9.2=py36h45558ae_0
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- entrypoints=0.3=py36_1000
- idna=2.8=py36_1000
- importlib_metadata=1.5.0=py36_0
- inflect=4.0.0=py36_1
- ipykernel=5.1.4=py36h5ca1d4c_0
- ipython=7.11.1=py36h5ca1d4c_0
- entrypoints=0.3=py36h9f0ad1d_1001
- idna=2.9=py_1
- importlib-metadata=1.6.0=py36h9f0ad1d_0
- importlib_metadata=1.6.0=0
- ipykernel=5.3.0=py36h95af2a2_0
- ipython=7.15.0=py36h9f0ad1d_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.5.1=py_0
- jaraco.itertools=5.0.0=py_0
- jedi=0.16.0=py36_0
- jinja2=2.11.0=py_0
- json5=0.8.5=py_0
- jsonschema=3.2.0=py36_0
- jupyter_client=5.3.4=py36_1
- jupyter_core=4.6.1=py36_0
- jupyter_telemetry=0.0.4=py_0
- jedi=0.17.0=py36h9f0ad1d_0
- jinja2=2.11.2=pyh9f0ad1d_0
- json5=0.9.0=py_0
- jsonschema=3.2.0=py36h9f0ad1d_1
- jupyter_client=6.1.3=py_0
- jupyter_core=4.6.3=py36h9f0ad1d_1
- jupyter_telemetry=0.0.5=py_0
- jupyterhub-base=1.1.0=py36_2
- jupyterhub-singleuser=1.1.0=py36_2
- jupyterlab=1.2.6=py_0
- jupyterlab_server=1.0.6=py_0
- krb5=1.16.4=h2fd8d38_0
- libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- jupyterlab_server=1.1.5=py_0
- krb5=1.17.1=h2fd8d38_0
- ld_impl_linux-64=2.34=h53a641e_4
- libcurl=7.69.1=hf7181ac_0
- libedit=3.1.20191231=h46ee950_0
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2
- libssh2=1.9.0=hab1572f_2
- libstdcxx-ng=9.2.0=hdf63c60_2
- mako=1.1.0=py_0
- markupsafe=1.1.1=py36h516909a_0
- mistune=0.8.4=py36h516909a_1000
- more-itertools=8.2.0=py_0
- nbconvert=5.6.1=py36_0
- nbformat=5.0.4=py_0
- markupsafe=1.1.1=py36h8c4c3a4_1
- mistune=0.8.4=py36h8c4c3a4_1001
- nbconvert=5.6.1=py36h9f0ad1d_1
- nbformat=5.0.6=py_0
- nbresuse=0.3.3=py_0
- ncurses=6.1=hf484d3e_1002
- notebook=6.0.3=py36_0
- notebook=6.0.3=py36h9f0ad1d_0
- nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0
- openssl=1.1.1d=h516909a_0
- openssl=1.1.1g=h516909a_0
- packaging=20.4=pyh9f0ad1d_0
- pamela=1.0.0=py_0
- pandoc=2.9.1.1=0
- pandoc=2.9.2.1=0
- pandocfilters=1.4.2=py_1
- parso=0.6.0=py_0
- pexpect=4.8.0=py36_0
- pickleshare=0.7.5=py36_1000
- pip=20.0.2=py36_0
- prometheus_client=0.7.1=py_0
- prompt_toolkit=3.0.3=py_0
- parso=0.7.0=pyh9f0ad1d_0
- pexpect=4.8.0=py36h9f0ad1d_1
- pickleshare=0.7.5=py36h9f0ad1d_1001
- pip=20.1.1=py_1
- prometheus_client=0.8.0=pyh9f0ad1d_0
- prompt-toolkit=3.0.5=py_0
- psutil=5.7.0=py36h8c4c3a4_1
- ptyprocess=0.6.0=py_1001
- pycparser=2.19=py36_1
- pycparser=2.20=py_0
- pycurl=7.43.0.5=py36h16ce93b_0
- pygments=2.5.2=py_0
- pygments=2.6.1=py_0
- pyjwt=1.7.1=py_0
- pyopenssl=19.1.0=py36_0
- pyrsistent=0.15.7=py36h516909a_0
- pysocks=1.7.1=py36_0
- python=3.6.7=h357f687_1006
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.16.0=py36h8c4c3a4_0
- pysocks=1.7.1=py36h9f0ad1d_1
- python=3.6.10=h8356626_1011_cpython
- python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0
- python-json-logger=0.1.11=py_0
- pyzmq=18.1.1=py36h1768529_0
- python_abi=3.6=1_cp36m
- pyzmq=19.0.1=py36h9947dbf_0
- readline=8.0=hf8c457e_0
- requests=2.22.0=py36_1
- ruamel.yaml=0.16.6=py36h516909a_0
- ruamel.yaml.clib=0.2.0=py36h516909a_0
- requests=2.23.0=pyh8c360ce_2
- ruamel.yaml=0.16.6=py36h8c4c3a4_1
- ruamel.yaml.clib=0.2.0=py36h8c4c3a4_1
- send2trash=1.5.0=py_0
- setuptools=45.1.0=py36_0
- six=1.14.0=py36_0
- sqlalchemy=1.3.13=py36h516909a_0
- setuptools=47.1.1=py36h9f0ad1d_0
- six=1.15.0=pyh9f0ad1d_0
- sqlalchemy=1.3.17=py36h8c4c3a4_0
- sqlite=3.30.1=hcee41ef_0
- terminado=0.8.3=py36_0
- terminado=0.8.3=py36h9f0ad1d_1
- testpath=0.4.4=py_0
- tk=8.6.10=hed695b0_0
- tornado=6.0.3=py36h516909a_0
- traitlets=4.3.3=py36_0
- urllib3=1.25.7=py36_0
- wcwidth=0.1.8=py_0
- tornado=6.0.4=py36h8c4c3a4_1
- traitlets=4.3.3=py36h9f0ad1d_1
- urllib3=1.25.9=py_0
- wcwidth=0.2.3=pyh9f0ad1d_0
- webencodings=0.5.1=py_1
- wheel=0.34.1=py36_0
- wheel=0.34.2=py_1
- widgetsnbextension=3.5.1=py36_0
- xz=5.2.4=h14c3975_1001
- xz=5.2.5=h516909a_0
- zeromq=4.3.2=he1b5a44_2
- zipp=2.1.0=py_0
- zipp=3.1.0=py_0
- zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d

3
repo2docker/buildpacks/conda/environment.py-3.6.yml
Wyświetl plik

@ -1,10 +1,11 @@
# AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
# Generated on 2020-01-30 10:54:21 UTC
# Generated on 2020-06-02 18:06:52 UTC
dependencies:
- python=3.6.*
- ipywidgets==7.5.1
- jupyterlab==1.2.6
- jupyterhub-singleuser==1.1.0
- nbconvert==5.6.1
- nbresuse==0.3.3
- notebook==6.0.3
- nteract_on_jupyter==2.1.3

134
repo2docker/buildpacks/conda/environment.py-3.7.frozen.yml
Wyświetl plik

@ -1,5 +1,5 @@
# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
# Frozen on 2020-01-30 10:54:05 UTC
# Frozen on 2020-06-02 18:09:38 UTC
name: r2d
channels:
- conda-forge
@ -8,105 +8,109 @@ channels:
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- alembic=1.3.3=py_0
- alembic=1.4.2=pyh9f0ad1d_0
- async_generator=1.10=py_0
- attrs=19.3.0=py_0
- backcall=0.1.0=py_0
- bleach=3.1.0=py_0
- bleach=3.1.5=pyh9f0ad1d_0
- blinker=1.4=py_1
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py37_0
- brotlipy=0.7.0=py37h8f50634_1000
- ca-certificates=2020.4.5.1=hecc5488_0
- certifi=2020.4.5.1=py37hc8dfbb8_0
- certipy=0.1.3=py_0
- cffi=1.13.2=py37h8022711_0
- chardet=3.0.4=py37_1003
- cryptography=2.8=py37h72c5cf5_1
- decorator=4.4.1=py_0
- cffi=1.14.0=py37hd463f26_0
- chardet=3.0.4=py37hc8dfbb8_1006
- cryptography=2.9.2=py37hb09aad4_0
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- entrypoints=0.3=py37_1000
- idna=2.8=py37_1000
- importlib_metadata=1.5.0=py37_0
- inflect=4.0.0=py37_1
- ipykernel=5.1.4=py37h5ca1d4c_0
- ipython=7.11.1=py37h5ca1d4c_0
- entrypoints=0.3=py37hc8dfbb8_1001
- idna=2.9=py_1
- importlib-metadata=1.6.0=py37hc8dfbb8_0
- importlib_metadata=1.6.0=0
- ipykernel=5.3.0=py37h43977f1_0
- ipython=7.15.0=py37hc8dfbb8_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.5.1=py_0
- jaraco.itertools=5.0.0=py_0
- jedi=0.16.0=py37_0
- jinja2=2.11.0=py_0
- json5=0.8.5=py_0
- jsonschema=3.2.0=py37_0
- jupyter_client=5.3.4=py37_1
- jupyter_core=4.6.1=py37_0
- jupyter_telemetry=0.0.4=py_0
- jedi=0.17.0=py37hc8dfbb8_0
- jinja2=2.11.2=pyh9f0ad1d_0
- json5=0.9.0=py_0
- jsonschema=3.2.0=py37hc8dfbb8_1
- jupyter_client=6.1.3=py_0
- jupyter_core=4.6.3=py37hc8dfbb8_1
- jupyter_telemetry=0.0.5=py_0
- jupyterhub-base=1.1.0=py37_2
- jupyterhub-singleuser=1.1.0=py37_2
- jupyterlab=1.2.6=py_0
- jupyterlab_server=1.0.6=py_0
- krb5=1.16.4=h2fd8d38_0
- ld_impl_linux-64=2.33.1=h53a641e_8
- libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- jupyterlab_server=1.1.5=py_0
- krb5=1.17.1=h2fd8d38_0
- ld_impl_linux-64=2.34=h53a641e_4
- libcurl=7.69.1=hf7181ac_0
- libedit=3.1.20191231=h46ee950_0
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2
- libssh2=1.9.0=hab1572f_2
- libstdcxx-ng=9.2.0=hdf63c60_2
- mako=1.1.0=py_0
- markupsafe=1.1.1=py37h516909a_0
- mistune=0.8.4=py37h516909a_1000
- more-itertools=8.2.0=py_0
- nbconvert=5.6.1=py37_0
- nbformat=5.0.4=py_0
- markupsafe=1.1.1=py37h8f50634_1
- mistune=0.8.4=py37h8f50634_1001
- nbconvert=5.6.1=py37hc8dfbb8_1
- nbformat=5.0.6=py_0
- nbresuse=0.3.3=py_0
- ncurses=6.1=hf484d3e_1002
- notebook=6.0.3=py37_0
- notebook=6.0.3=py37hc8dfbb8_0
- nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0
- openssl=1.1.1d=h516909a_0
- openssl=1.1.1g=h516909a_0
- packaging=20.4=pyh9f0ad1d_0
- pamela=1.0.0=py_0
- pandoc=2.9.1.1=0
- pandoc=2.9.2.1=0
- pandocfilters=1.4.2=py_1
- parso=0.6.0=py_0
- pexpect=4.8.0=py37_0
- pickleshare=0.7.5=py37_1000
- pip=20.0.2=py37_0
- prometheus_client=0.7.1=py_0
- prompt_toolkit=3.0.3=py_0
- parso=0.7.0=pyh9f0ad1d_0
- pexpect=4.8.0=py37hc8dfbb8_1
- pickleshare=0.7.5=py37hc8dfbb8_1001
- pip=20.1.1=py_1
- prometheus_client=0.8.0=pyh9f0ad1d_0
- prompt-toolkit=3.0.5=py_0
- psutil=5.7.0=py37h8f50634_1
- ptyprocess=0.6.0=py_1001
- pycparser=2.19=py37_1
- pycparser=2.20=py_0
- pycurl=7.43.0.5=py37h16ce93b_0
- pygments=2.5.2=py_0
- pygments=2.6.1=py_0
- pyjwt=1.7.1=py_0
- pyopenssl=19.1.0=py37_0
- pyrsistent=0.15.7=py37h516909a_0
- pysocks=1.7.1=py37_0
- python=3.7.6=h357f687_2
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.16.0=py37h8f50634_0
- pysocks=1.7.1=py37hc8dfbb8_1
- python=3.7.6=cpython_h8356626_6
- python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0
- python-json-logger=0.1.11=py_0
- pyzmq=18.1.1=py37h1768529_0
- python_abi=3.7=1_cp37m
- pyzmq=19.0.1=py37hac76be4_0
- readline=8.0=hf8c457e_0
- requests=2.22.0=py37_1
- ruamel.yaml=0.16.6=py37h516909a_0
- ruamel.yaml.clib=0.2.0=py37h516909a_0
- requests=2.23.0=pyh8c360ce_2
- ruamel.yaml=0.16.6=py37h8f50634_1
- ruamel.yaml.clib=0.2.0=py37h8f50634_1
- send2trash=1.5.0=py_0
- setuptools=45.1.0=py37_0
- six=1.14.0=py37_0
- sqlalchemy=1.3.13=py37h516909a_0
- setuptools=47.1.1=py37hc8dfbb8_0
- six=1.15.0=pyh9f0ad1d_0
- sqlalchemy=1.3.17=py37h8f50634_0
- sqlite=3.30.1=hcee41ef_0
- terminado=0.8.3=py37_0
- terminado=0.8.3=py37hc8dfbb8_1
- testpath=0.4.4=py_0
- tk=8.6.10=hed695b0_0
- tornado=6.0.3=py37h516909a_0
- traitlets=4.3.3=py37_0
- urllib3=1.25.7=py37_0
- wcwidth=0.1.8=py_0
- tornado=6.0.4=py37h8f50634_1
- traitlets=4.3.3=py37hc8dfbb8_1
- urllib3=1.25.9=py_0
- wcwidth=0.2.3=pyh9f0ad1d_0
- webencodings=0.5.1=py_1
- wheel=0.34.1=py37_0
- wheel=0.34.2=py_1
- widgetsnbextension=3.5.1=py37_0
- xz=5.2.4=h14c3975_1001
- xz=5.2.5=h516909a_0
- zeromq=4.3.2=he1b5a44_2
- zipp=2.1.0=py_0
- zipp=3.1.0=py_0
- zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d

3
repo2docker/buildpacks/conda/environment.py-3.7.yml
Wyświetl plik

@ -1,10 +1,11 @@
# AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
# Generated on 2020-01-30 10:54:05 UTC
# Generated on 2020-06-02 18:09:38 UTC
dependencies:
- python=3.7.*
- ipywidgets==7.5.1
- jupyterlab==1.2.6
- jupyterhub-singleuser==1.1.0
- nbconvert==5.6.1
- nbresuse==0.3.3
- notebook==6.0.3
- nteract_on_jupyter==2.1.3

134
repo2docker/buildpacks/conda/environment.py-3.8.frozen.yml
Wyświetl plik

@ -1,5 +1,5 @@
# AUTO GENERATED FROM environment.py-3.8.yml, DO NOT MANUALLY MODIFY
# Frozen on 2020-01-30 10:53:33 UTC
# Frozen on 2020-06-02 18:12:32 UTC
name: r2d
channels:
- conda-forge
@ -8,105 +8,109 @@ channels:
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- alembic=1.3.3=py_0
- alembic=1.4.2=pyh9f0ad1d_0
- async_generator=1.10=py_0
- attrs=19.3.0=py_0
- backcall=0.1.0=py_0
- bleach=3.1.0=py_0
- bleach=3.1.5=pyh9f0ad1d_0
- blinker=1.4=py_1
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py38_0
- brotlipy=0.7.0=py38h1e0a361_1000
- ca-certificates=2020.4.5.1=hecc5488_0
- certifi=2020.4.5.1=py38h32f6830_0
- certipy=0.1.3=py_0
- cffi=1.13.2=py38h8022711_0
- chardet=3.0.4=py38_1003
- cryptography=2.8=py38h72c5cf5_1
- decorator=4.4.1=py_0
- cffi=1.14.0=py38hd463f26_0
- chardet=3.0.4=py38h32f6830_1006
- cryptography=2.9.2=py38h766eaa4_0
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- entrypoints=0.3=py38_1000
- idna=2.8=py38_1000
- importlib_metadata=1.5.0=py38_0
- inflect=4.0.0=py38_1
- ipykernel=5.1.4=py38h5ca1d4c_0
- ipython=7.11.1=py38h5ca1d4c_0
- entrypoints=0.3=py38h32f6830_1001
- idna=2.9=py_1
- importlib-metadata=1.6.0=py38h32f6830_0
- importlib_metadata=1.6.0=0
- ipykernel=5.3.0=py38h23f93f0_0
- ipython=7.15.0=py38h32f6830_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.5.1=py_0
- jaraco.itertools=5.0.0=py_0
- jedi=0.16.0=py38_0
- jinja2=2.11.0=py_0
- json5=0.8.5=py_0
- jsonschema=3.2.0=py38_0
- jupyter_client=5.3.4=py38_1
- jupyter_core=4.6.1=py38_0
- jupyter_telemetry=0.0.4=py_0
- jedi=0.17.0=py38h32f6830_0
- jinja2=2.11.2=pyh9f0ad1d_0
- json5=0.9.0=py_0
- jsonschema=3.2.0=py38h32f6830_1
- jupyter_client=6.1.3=py_0
- jupyter_core=4.6.3=py38h32f6830_1
- jupyter_telemetry=0.0.5=py_0
- jupyterhub-base=1.1.0=py38_2
- jupyterhub-singleuser=1.1.0=py38_2
- jupyterlab=1.2.6=py_0
- jupyterlab_server=1.0.6=py_0
- krb5=1.16.4=h2fd8d38_0
- ld_impl_linux-64=2.33.1=h53a641e_8
- libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- jupyterlab_server=1.1.5=py_0
- krb5=1.17.1=h2fd8d38_0
- ld_impl_linux-64=2.34=h53a641e_4
- libcurl=7.69.1=hf7181ac_0
- libedit=3.1.20191231=h46ee950_0
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2
- libssh2=1.9.0=hab1572f_2
- libstdcxx-ng=9.2.0=hdf63c60_2
- mako=1.1.0=py_0
- markupsafe=1.1.1=py38h516909a_0
- mistune=0.8.4=py38h516909a_1000
- more-itertools=8.2.0=py_0
- nbconvert=5.6.1=py38_0
- nbformat=5.0.4=py_0
- markupsafe=1.1.1=py38h1e0a361_1
- mistune=0.8.4=py38h1e0a361_1001
- nbconvert=5.6.1=py38h32f6830_1
- nbformat=5.0.6=py_0
- nbresuse=0.3.3=py_0
- ncurses=6.1=hf484d3e_1002
- notebook=6.0.3=py38_0
- notebook=6.0.3=py38h32f6830_0
- nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0
- openssl=1.1.1d=h516909a_0
- openssl=1.1.1g=h516909a_0
- packaging=20.4=pyh9f0ad1d_0
- pamela=1.0.0=py_0
- pandoc=2.9.1.1=0
- pandoc=2.9.2.1=0
- pandocfilters=1.4.2=py_1
- parso=0.6.0=py_0
- pexpect=4.8.0=py38_0
- pickleshare=0.7.5=py38_1000
- pip=20.0.2=py38_0
- prometheus_client=0.7.1=py_0
- prompt_toolkit=3.0.3=py_0
- parso=0.7.0=pyh9f0ad1d_0
- pexpect=4.8.0=py38h32f6830_1
- pickleshare=0.7.5=py38h32f6830_1001
- pip=20.1.1=py_1
- prometheus_client=0.8.0=pyh9f0ad1d_0
- prompt-toolkit=3.0.5=py_0
- psutil=5.7.0=py38h1e0a361_1
- ptyprocess=0.6.0=py_1001
- pycparser=2.19=py38_1
- pycparser=2.20=py_0
- pycurl=7.43.0.5=py38h16ce93b_0
- pygments=2.5.2=py_0
- pygments=2.6.1=py_0
- pyjwt=1.7.1=py_0
- pyopenssl=19.1.0=py38_0
- pyrsistent=0.15.7=py38h516909a_0
- pysocks=1.7.1=py38_0
- python=3.8.1=h357f687_2
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.16.0=py38h1e0a361_0
- pysocks=1.7.1=py38h32f6830_1
- python=3.8.3=cpython_he5300dc_0
- python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0
- python-json-logger=0.1.11=py_0
- pyzmq=18.1.1=py38h1768529_0
- python_abi=3.8=1_cp38
- pyzmq=19.0.1=py38ha71036d_0
- readline=8.0=hf8c457e_0
- requests=2.22.0=py38_1
- ruamel.yaml=0.16.6=py38h516909a_0
- ruamel.yaml.clib=0.2.0=py38h516909a_0
- requests=2.23.0=pyh8c360ce_2
- ruamel.yaml=0.16.6=py38h1e0a361_1
- ruamel.yaml.clib=0.2.0=py38h1e0a361_1
- send2trash=1.5.0=py_0
- setuptools=45.1.0=py38_0
- six=1.14.0=py38_0
- sqlalchemy=1.3.13=py38h516909a_0
- setuptools=47.1.1=py38h32f6830_0
- six=1.15.0=pyh9f0ad1d_0
- sqlalchemy=1.3.17=py38h1e0a361_0
- sqlite=3.30.1=hcee41ef_0
- terminado=0.8.3=py38_0
- terminado=0.8.3=py38h32f6830_1
- testpath=0.4.4=py_0
- tk=8.6.10=hed695b0_0
- tornado=6.0.3=py38h516909a_0
- traitlets=4.3.3=py38_0
- urllib3=1.25.7=py38_0
- wcwidth=0.1.8=py_0
- tornado=6.0.4=py38h1e0a361_1
- traitlets=4.3.3=py38h32f6830_1
- urllib3=1.25.9=py_0
- wcwidth=0.2.3=pyh9f0ad1d_0
- webencodings=0.5.1=py_1
- wheel=0.34.1=py38_0
- wheel=0.34.2=py_1
- widgetsnbextension=3.5.1=py38_0
- xz=5.2.4=h14c3975_1001
- xz=5.2.5=h516909a_0
- zeromq=4.3.2=he1b5a44_2
- zipp=2.1.0=py_0
- zipp=3.1.0=py_0
- zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d

3
repo2docker/buildpacks/conda/environment.py-3.8.yml
Wyświetl plik

@ -1,10 +1,11 @@
# AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
# Generated on 2020-01-30 10:53:33 UTC
# Generated on 2020-06-02 18:12:32 UTC
dependencies:
- python=3.8.*
- ipywidgets==7.5.1
- jupyterlab==1.2.6
- jupyterhub-singleuser==1.1.0
- nbconvert==5.6.1
- nbresuse==0.3.3
- notebook==6.0.3
- nteract_on_jupyter==2.1.3

1
repo2docker/buildpacks/conda/environment.yml
Wyświetl plik

@ -4,5 +4,6 @@ dependencies:
- jupyterlab==1.2.6
- jupyterhub-singleuser==1.1.0
- nbconvert==5.6.1
- nbresuse==0.3.3
- notebook==6.0.3
- nteract_on_jupyter==2.1.3

1
repo2docker/buildpacks/julia/julia_project.py
Wyświetl plik

@ -28,6 +28,7 @@ class JuliaProjectTomlBuildPack(PythonBuildPack):
"1.3.1",
"1.4.0",
"1.4.1",
"1.4.2",
]
@property