Add simple hacky version of a miniconda builder

pull/6/head
yuvipanda 2017-05-08 16:26:57 -07:00
rodzic efd55a9bff
commit bafa6d7d50
11 zmienionych plików z 321 dodań i 0 usunięć

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FROM ubuntu:16.10
MAINTAINER Yuvi Panda <yuvipanda@gmail.com>
LABEL io.openshift.s2i.scripts-url=image:///usr/libexec/s2i
RUN apt-get update && \
apt-get install --yes --no-install-recommends \
wget \
tar \
ca-certificates \
bzip2 \
git && \
apt-get purge && apt-get clean
ENV CONDA_DIR /opt/conda
ENV PATH $CONDA_DIR/bin:$PATH
ENV NB_USER jovyan
RUN adduser --disabled-password --gecos "Default Jupyter user" ${NB_USER}
WORKDIR /home/${NB_USER}
ADD install-miniconda.bash /usr/local/bin/install-miniconda.bash
RUN /usr/local/bin/install-miniconda.bash
USER $NB_USER
RUN pip install --no-cache-dir notebook==5.0.0 jupyterhub==0.7.2 ipywidgets==5.2.3 && \
jupyter nbextension enable --py widgetsnbextension
COPY ./s2i/bin/ /usr/libexec/s2i
EXPOSE 8888

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IMAGE_NAME = jupyterhub/singleuser-builder-miniconda
VERSION = $(shell cat version)
.PHONY: build
build:
docker build -t $(IMAGE_NAME):$(VERSION) .
.PHONY: test
test:
docker build -t $(IMAGE_NAME)-candidate:$(VERSION) .
IMAGE_NAME=$(IMAGE_NAME)-candidate:$(VERSION) test/run

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# JupyterHub singleuser builder
This is a builder image for use with [s2i](https://github.com/openshift/source-to-image). It
builds a source repository (such as a github repository) into a docker image that is suitable
for use with [JupyterHub](http://github.com/jupyterhub/jupyterhub).
It is based off Ubuntu 16.10, and uses [virtualenv](https://pypi.python.org/pypi/virtualenv) to
provide a custom python3.5 environment.
It looks for a `requirements.txt` file in the source repository, and installs it into the virtualenv.
It also installs a number of default notebook related modules in there

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#!/bin/bash
# This downloads and installs a pinned version of miniconda
set -e
CONDA_VERSION=4.2.12
URL="https://repo.continuum.io/miniconda/Miniconda3-${CONDA_VERSION}-Linux-x86_64.sh"
INSTALLER_PATH=/usr/local/sbin/miniconda-installer
wget --quiet $URL -O ${INSTALLER_PATH}
chmod +x ${INSTALLER_PATH}
# Only MD5 checksums are available for miniconda
# Can be obtained from https://repo.continuum.io/miniconda/
MD5SUM="d0c7c71cc5659e54ab51f2005a8d96f3"
if ! echo "${MD5SUM} ${INSTALLER_PATH}" | md5sum --quiet -c -; then
echo "md5sum mismatch for ${INSTALLER_PATH}, exiting!"
exit 1
fi
${INSTALLER_PATH} -f -b -p ${CONDA_DIR}
# Allow easy direct installs from conda forge
${CONDA_DIR}/bin/conda config --system --add channels conda-forge
# Do not attempt to auto update conda
${CONDA_DIR}/bin/conda config --system --set auto_update_conda false
# Clean things out!
${CONDA_DIR}/bin/conda clean -tipsy
# Remove the big installer so we don't increase docker image size too much
rm ${INSTALLER_PATH}
chown -R $NB_USER:$NB_USER ${CONDA_DIR}

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#!/bin/bash -e
#
# S2I assemble script for the jupyterhub/singleuser-builder image.
# The 'assemble' script builds your application source so that it is ready to run.
#
# For more information refer to the documentation:
# https://github.com/openshift/source-to-image/blob/master/docs/builder_image.md
#
if [[ "$1" == "-h" ]]; then
exec /usr/libexec/s2i/usage
fi
# Restore artifacts from the previous build (if they exist).
echo "---> Installing application source..."
# HACK: We copy it to current directory too, since people wanna see the
# notebooks and stuff in there. Figure out a way to tweak this?
cp -Rf /tmp/src/. .
echo "---> Building application from source..."
if [ -f environment.yml ]; then
conda env update -f environment.yml
elif [ -f requirements.txt ]; then
pip install -r requirements.txt
fi

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#!/bin/bash -e
#
# S2I run script for the 'ubuntu1610-python35-venv' image.
# The run script executes the server that runs your application.
#
# For more information see the documentation:
# https://github.com/openshift/source-to-image/blob/master/docs/builder_image.md
#
exec jupyter notebook --ip=0.0.0.0

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#!/bin/sh -e
#
# S2I save-artifacts script for the 'ubuntu1610-python35-venv' image.
# The save-artifacts script streams a tar archive to standard output.
# The archive contains the files and folders you want to re-use in the next build.
#
# For more information see the documentation:
# https://github.com/openshift/source-to-image/blob/master/docs/builder_image.md
#
# tar cf - <list of files and folders>

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#!/bin/bash -e
cat <<EOF
This is the ubuntu1610-python35-venv S2I image:
To use it, install S2I: https://github.com/openshift/source-to-image
Sample invocation:
s2i build <source code path/URL> ubuntu1610-python35-venv <application image>
You can then run the resulting image via:
docker run <application image>
EOF

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#!/bin/bash
#
# The 'run' performs a simple test that verifies the S2I image.
# The main focus here is to exercise the S2I scripts.
#
# For more information see the documentation:
# https://github.com/openshift/source-to-image/blob/master/docs/builder_image.md
#
# IMAGE_NAME specifies a name of the candidate image used for testing.
# The image has to be available before this script is executed.
#
IMAGE_NAME=${IMAGE_NAME-ubuntu1610-python35-venv-candidate}
# Determining system utility executables (darwin compatibility check)
READLINK_EXEC="readlink"
MKTEMP_EXEC="mktemp"
if [[ "$OSTYPE" =~ 'darwin' ]]; then
! type -a "greadlink" &>"/dev/null" || READLINK_EXEC="greadlink"
! type -a "gmktemp" &>"/dev/null" || MKTEMP_EXEC="gmktemp"
fi
test_dir="$($READLINK_EXEC -zf $(dirname "${BASH_SOURCE[0]}"))"
image_dir=$($READLINK_EXEC -zf ${test_dir}/..)
scripts_url="file://${image_dir}/.s2i/bin"
cid_file=$($MKTEMP_EXEC -u --suffix=.cid)
# Since we built the candidate image locally, we don't want S2I to attempt to pull
# it from Docker hub
s2i_args="--pull-policy=never --loglevel=2"
# Port the image exposes service to be tested
test_port=8080
image_exists() {
docker inspect $1 &>/dev/null
}
container_exists() {
image_exists $(cat $cid_file)
}
container_ip() {
if [ ! -z "$DOCKER_HOST" ] && [[ "$OSTYPE" =~ 'darwin' ]]; then
docker-machine ip
else
docker inspect --format="{{ .NetworkSettings.IPAddress }}" $(cat $cid_file)
fi
}
container_port() {
if [ ! -z "$DOCKER_HOST" ] && [[ "$OSTYPE" =~ 'darwin' ]]; then
docker inspect --format="{{(index .NetworkSettings.Ports \"$test_port/tcp\" 0).HostPort}}" "$(cat "${cid_file}")"
else
echo $test_port
fi
}
run_s2i_build() {
s2i build --incremental=true ${s2i_args} file://${test_dir}/test-app ${IMAGE_NAME} ${IMAGE_NAME}-testapp
}
prepare() {
if ! image_exists ${IMAGE_NAME}; then
echo "ERROR: The image ${IMAGE_NAME} must exist before this script is executed."
exit 1
fi
# s2i build requires the application is a valid 'Git' repository
pushd ${test_dir}/test-app >/dev/null
git init
git config user.email "build@localhost" && git config user.name "builder"
git add -A && git commit -m "Sample commit"
popd >/dev/null
run_s2i_build
}
run_test_application() {
docker run --rm --cidfile=${cid_file} -p ${test_port} ${IMAGE_NAME}-testapp
}
cleanup() {
if [ -f $cid_file ]; then
if container_exists; then
docker stop $(cat $cid_file)
fi
fi
if image_exists ${IMAGE_NAME}-testapp; then
docker rmi ${IMAGE_NAME}-testapp
fi
}
check_result() {
local result="$1"
if [[ "$result" != "0" ]]; then
echo "S2I image '${IMAGE_NAME}' test FAILED (exit code: ${result})"
cleanup
exit $result
fi
}
wait_for_cid() {
local max_attempts=10
local sleep_time=1
local attempt=1
local result=1
while [ $attempt -le $max_attempts ]; do
[ -f $cid_file ] && break
echo "Waiting for container to start..."
attempt=$(( $attempt + 1 ))
sleep $sleep_time
done
}
test_usage() {
echo "Testing 's2i usage'..."
s2i usage ${s2i_args} ${IMAGE_NAME} &>/dev/null
}
test_connection() {
echo "Testing HTTP connection (http://$(container_ip):$(container_port))"
local max_attempts=10
local sleep_time=1
local attempt=1
local result=1
while [ $attempt -le $max_attempts ]; do
echo "Sending GET request to http://$(container_ip):$(container_port)/"
response_code=$(curl -s -w %{http_code} -o /dev/null http://$(container_ip):$(container_port)/)
status=$?
if [ $status -eq 0 ]; then
if [ $response_code -eq 200 ]; then
result=0
fi
break
fi
attempt=$(( $attempt + 1 ))
sleep $sleep_time
done
return $result
}
# Build the application image twice to ensure the 'save-artifacts' and
# 'restore-artifacts' scripts are working properly
prepare
run_s2i_build
check_result $?
# Verify the 'usage' script is working properly
test_usage
check_result $?
# Verify that the HTTP connection can be established to test application container
run_test_application &
# Wait for the container to write its CID file
wait_for_cid
test_connection
check_result $?
cleanup

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<!doctype html>
<html>
<head>
<title>Hello World!</title>
</head>
<body>
<h1>Hello World!</h1>
</body>
</html>

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v0.1.1