sync with main

.github/workflows/docker.yml

@@ -11,6 +11,7 @@ on:
       - "**.rst"
       - ".github/workflows/*"
       - "!.github/workflows/docker.yml"
+      - ".pre-commit-config.yaml"
   push:
     paths-ignore:
       - "docs/**"
@@ -18,6 +19,7 @@ on:
       - "**.rst"
       - ".github/workflows/*"
       - "!.github/workflows/docker.yml"
+      - ".pre-commit-config.yaml"
     branches-ignore:
       - "dependabot/**"
       - "pre-commit-ci-update-config"

.github/workflows/release.yml

@@ -11,6 +11,7 @@ on:
       - "**.rst"
       - ".github/workflows/*"
       - "!.github/workflows/release.yml"
+      - ".pre-commit-config.yaml"
   push:
     paths-ignore:
       - "docs/**"
@@ -18,6 +19,7 @@ on:
       - "**.rst"
       - ".github/workflows/*"
       - "!.github/workflows/release.yml"
+      - ".pre-commit-config.yaml"
     branches-ignore:
       - "dependabot/**"
       - "pre-commit-ci-update-config"
@@ -55,7 +57,7 @@ jobs:
       # all previous steps always run in order to exercise them
       - name: Publish distribution to PyPI
         if: startsWith(github.ref, 'refs/tags')
-        uses: pypa/gh-action-pypi-publish@v1.5.1
+        uses: pypa/gh-action-pypi-publish@v1.6.4
         with:
           password: ${{ secrets.PYPI_PASSWORD }}
 
@@ -125,6 +127,6 @@ jobs:
         uses: docker/build-push-action@v3
         with:
           context: .
-          platforms: linux/amd64
+          platforms: linux/amd64,linux/arm64
           push: true
           tags: ${{ env.TAGS }}

.github/workflows/test.yml

@@ -11,6 +11,7 @@ on:
       - "**.rst"
       - ".github/workflows/*"
       - "!.github/workflows/test.yml"
+      - ".pre-commit-config.yaml"
   push:
     paths-ignore:
       - "docs/**"
@@ -18,6 +19,7 @@ on:
       - "**.rst"
       - ".github/workflows/*"
       - "!.github/workflows/test.yml"
+      - ".pre-commit-config.yaml"
     branches-ignore:
       - "dependabot/**"
       - "pre-commit-ci-update-config"

.gitpod.yml

@@ -1,10 +1,12 @@
 tasks:
   - init: |
       pip3 install sphinx-autobuild
+      pip3 install -r dev-requirements.txt
       pip3 install -r docs/requirements.txt
       pip3 install -e .
     command: |
       sphinx-autobuild docs/source/ docs/_build/html/
     name: Sphinx preview
+      
 ports:
   - port: 8000

.pre-commit-config.yaml

@@ -11,7 +11,7 @@
 repos:
   # Autoformat: Python code, syntax patterns are modernized
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.2.2
+    rev: v3.3.1
     hooks:
       - id: pyupgrade
         args:
@@ -23,7 +23,7 @@ repos:
 
   # Autoformat: Python code
   - repo: https://github.com/psf/black
-    rev: 22.10.0
+    rev: 23.1.0
     hooks:
       - id: black
         args:
@@ -36,7 +36,7 @@ repos:
 
   # Autoformat: Python code
   - repo: https://github.com/pycqa/isort
-    rev: 5.10.1
+    rev: 5.12.0
     hooks:
       - id: isort
         args:
@@ -48,3 +48,7 @@ repos:
     hooks:
       - id: prettier
         files: ".md"
+
+# pre-commit.ci config reference: https://pre-commit.ci/#configuration
+ci:
+  autoupdate_schedule: monthly

Dockerfile

@@ -1,21 +1,16 @@
 # syntax = docker/dockerfile:1.3
 ARG ALPINE_VERSION=3.16
-FROM alpine:${ALPINE_VERSION} AS builder
+FROM alpine:${ALPINE_VERSION}
 
 RUN apk add --no-cache git python3 python3-dev py-pip build-base
 
-# set pip's cache directory using this environment variable, and use
-# ARG instead of ENV to ensure its only set when the image is built
-ARG PIP_CACHE_DIR=/tmp/pip-cache
-
 # build wheels in first image
 ADD . /tmp/src
 RUN cd /tmp/src && git clean -xfd && git status
-RUN --mount=type=cache,target=${PIP_CACHE_DIR} \
+RUN mkdir /tmp/wheelhouse \
-    mkdir /tmp/wheelhouse \
  && cd /tmp/wheelhouse \
  && pip3 install wheel \
- && pip3 wheel /tmp/src \
+ && pip3 wheel --no-cache-dir /tmp/src \
  && ls -l /tmp/wheelhouse
 
 FROM alpine:${ALPINE_VERSION}
@@ -23,17 +18,12 @@ FROM alpine:${ALPINE_VERSION}
 # install python, git, bash, mercurial
 RUN apk add --no-cache git git-lfs python3 py-pip bash docker mercurial
 
-# repeat ARG from above
+# install hg-evolve (Mercurial extensions)
-ARG PIP_CACHE_DIR=/tmp/pip-cache
+RUN pip3 install hg-evolve --user --no-cache-dir
 
 # install repo2docker
-# and hg-evolve (Mercurial extensions)
+COPY --from=0 /tmp/wheelhouse /tmp/wheelhouse
-# mount /tmp/wheelhouse from build stage
+RUN pip3 install --no-cache-dir --ignore-installed --no-deps /tmp/wheelhouse/*.whl \
-# avoids extra layer when using COPY --from
-RUN --mount=type=cache,target=${PIP_CACHE_DIR} \
-    --mount=type=cache,from=builder,source=/tmp/wheelhouse,target=/tmp/wheelhouse \
-    pip3 install --ignore-installed --no-deps /tmp/wheelhouse/*.whl \
- && pip3 install hg-evolve \
  && pip3 list
 
 # add git-credential helper

docs/source/howto/user_interface.rst

@@ -97,7 +97,7 @@ http://mybinder.org/v2/gh/binder-examples/r/HEAD?urlpath=rstudio
 Shiny
 =====
 
-`Shiny lets you create interactive visualizaions with R <https://shiny.rstudio.com/>`_.
+`Shiny lets you create interactive visualizations with R <https://shiny.rstudio.com/>`_.
 Shiny is automatically enabled if a configuration file for
 R is detected (i.e. an R version specified in ``runtime.txt``). If
 this is detected, Shiny will be accessible by appending

repo2docker/app.py

@@ -15,6 +15,7 @@ import shutil
 import sys
 import tempfile
 import time
+import warnings
 from urllib.parse import urlparse
 
 import entrypoints
@@ -36,7 +37,7 @@ from .buildpacks import (
     RBuildPack,
 )
 from .engine import BuildError, ContainerEngineException, ImageLoadError
-from .utils import ByteSpecification, R2dState, chdir
+from .utils import ByteSpecification, R2dState, chdir, get_platform
 
 
 class Repo2Docker(Application):
@@ -250,6 +251,27 @@ class Repo2Docker(Application):
         config=True,
     )
 
+    platform = Unicode(
+        config=True,
+        help="""
+        Platform to build for, linux/amd64 (recommended) or linux/arm64 (experimental).
+        """,
+    )
+
+    @default("platform")
+    def _platform_default(self):
+        """
+        Default platform
+        """
+        p = get_platform()
+        if p == "linux/arm64":
+            warnings.warn(
+                "Building for linux/arm64 is experimental. "
+                "To use the recommended platform set --Repo2Docker.platform=linux/amd64. "
+                "To silence this warning set --Repo2Docker.platform=linux/arm64."
+            )
+        return p
+
     extra_build_args = Dict(
         {},
         help="""
@@ -778,6 +800,7 @@ class Repo2Docker(Application):
                 else:
                     picked_buildpack = self.default_buildpack()
 
+                picked_buildpack.platform = self.platform
                 picked_buildpack.appendix = self.appendix
                 # Add metadata labels
                 picked_buildpack.labels["repo2docker.version"] = self.version
@@ -819,6 +842,7 @@ class Repo2Docker(Application):
                         build_args,
                         self.cache_from,
                         self.extra_build_kwargs,
+                        platform=self.platform,
                     ):
                         if docker_client.string_output:
                             self.log.info(l, extra=dict(phase=R2dState.BUILDING))

repo2docker/buildpacks/base.py

@@ -229,6 +229,7 @@ class BuildPack:
                 "Windows environment detected. Note that Windows "
                 "support is experimental in repo2docker."
             )
+        self.platform = ""
 
     def get_packages(self):
         """
@@ -559,6 +560,7 @@ class BuildPack:
         build_args,
         cache_from,
         extra_build_kwargs,
+        platform=None,
     ):
         tarf = io.BytesIO()
         tar = tarfile.open(fileobj=tarf, mode="w")
@@ -613,6 +615,7 @@ class BuildPack:
             buildargs=build_args,
             container_limits=limits,
             cache_from=cache_from,
+            platform=platform,
         )
 
         build_kwargs.update(extra_build_kwargs)

repo2docker/buildpacks/conda/__init__.py

@@ -35,6 +35,14 @@ class CondaBuildPack(BaseImage):
     # extra pip requirements.txt for the notebook env
     _nb_requirements_file = ""
 
+    def _conda_platform(self):
+        """Return the conda platform name for the current platform"""
+        if self.platform == "linux/amd64":
+            return "linux-64"
+        if self.platform == "linux/arm64":
+            return "linux-aarch64"
+        raise ValueError(f"Unknown platform {self.platform}")
+
     def get_build_env(self):
         """Return environment variables to be set.
 
@@ -59,6 +67,7 @@ class CondaBuildPack(BaseImage):
             # this exe should be used for installs after bootstrap with micromamba
             # switch this to /usr/local/bin/micromamba to use it for all installs
             ("MAMBA_EXE", "${CONDA_DIR}/bin/mamba"),
+            ("CONDA_PLATFORM", self._conda_platform()),
         ]
         if self._nb_requirements_file:
             env.append(("NB_REQUIREMENTS_FILE", self._nb_requirements_file))
@@ -160,13 +169,18 @@ class CondaBuildPack(BaseImage):
         # major Python versions during upgrade.
         # If no version is specified or no matching X.Y version is found,
         # the default base environment is used.
-        frozen_name = "environment.lock"
+        frozen_name = f"environment-{self._conda_platform()}.lock"
         pip_frozen_name = "requirements.txt"
         if py_version:
             if self.python_version == "2.7":
+                if "linux-64" != self._conda_platform():
+                    raise ValueError(
+                        f"Python version 2.7 {self._conda_platform()} is not supported!"
+                    )
+
                 # python 2 goes in a different env
                 files[
-                    "conda/environment.py-2.7.lock"
+                    "conda/environment.py-2.7-linux-64.lock"
                 ] = self._kernel_environment_file = "/tmp/env/kernel-environment.lock"
                 # additional pip requirements for kernel env
                 if os.path.exists(os.path.join(HERE, "requirements.py-2.7.txt")):
@@ -176,12 +190,16 @@ class CondaBuildPack(BaseImage):
                         self._kernel_requirements_file
                     ) = "/tmp/env/kernel-requirements.txt"
             else:
-                py_frozen_name = f"environment.py-{py_version}.lock"
+                py_frozen_name = (
+                    f"environment.py-{py_version}-{self._conda_platform()}.lock"
+                )
                 if os.path.exists(os.path.join(HERE, py_frozen_name)):
                     frozen_name = py_frozen_name
                     pip_frozen_name = f"requirements.py-{py_version}.pip"
                 else:
-                    raise ValueError(f"Python version {py_version} is not supported!")
+                    raise ValueError(
+                        f"Python version {py_version} {self._conda_platform()} is not supported!"
+                    )
         files[
             "conda/" + frozen_name
         ] = self._nb_environment_file = "/tmp/env/environment.lock"
@@ -366,6 +384,10 @@ class CondaBuildPack(BaseImage):
                 """,
                 )
             )
+            if self.platform != "linux/amd64":
+                raise RuntimeError(
+                    f"RStudio is only available for linux/amd64 ({self.platform})"
+                )
             scripts += rstudio_base_scripts(self.r_version)
             scripts += [
                 (

repo2docker/buildpacks/conda/environment-linux-64.lock

@@ -39,12 +39,13 @@ https://conda.anaconda.org/conda-forge/linux-64/krb5-1.19.3-h08a2579_0.tar.bz2#d
 https://conda.anaconda.org/conda-forge/linux-64/nodejs-16.17.1-h8839609_0.tar.bz2#1a19c5a76422549640a6824d6db189cf
 https://conda.anaconda.org/conda-forge/linux-64/python-3.10.6-ha86cf86_0_cpython.tar.bz2#98d77e6496f7516d6b3c508f71c102fc
 https://conda.anaconda.org/conda-forge/noarch/async_generator-1.10-py_0.tar.bz2#d56c596e61b1c4952acf0a9920856c12
-https://conda.anaconda.org/conda-forge/noarch/attrs-22.1.0-pyh71513ae_1.tar.bz2#6d3ccbc56256204925bfa8378722792f
+https://conda.anaconda.org/conda-forge/noarch/attrs-22.2.0-pyh71513ae_0.conda#8b76db7818a4e401ed4486c4c1635cd9
 https://conda.anaconda.org/conda-forge/noarch/backcall-0.2.0-pyh9f0ad1d_0.tar.bz2#6006a6d08a3fa99268a2681c7fb55213
-https://conda.anaconda.org/conda-forge/noarch/backports-1.0-py_2.tar.bz2#0da16b293affa6ac31812376f8eb79dd
+https://conda.anaconda.org/conda-forge/noarch/backports-1.0-pyhd8ed1ab_3.conda#54ca2e08b3220c148a1d8329c2678e02
 https://conda.anaconda.org/conda-forge/noarch/blinker-1.5-pyhd8ed1ab_0.tar.bz2#f473c4e32d8180733ba5594d122cb637
-https://conda.anaconda.org/conda-forge/noarch/certifi-2022.9.24-pyhd8ed1ab_0.tar.bz2#f66309b099374af91369e67e84af397d
+https://conda.anaconda.org/conda-forge/noarch/certifi-2022.12.7-pyhd8ed1ab_0.conda#fb9addc3db06e56abe03e0e9f21a63e6
 https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-2.1.1-pyhd8ed1ab_0.tar.bz2#c1d5b294fbf9a795dec349a6f4d8be8e
+https://conda.anaconda.org/conda-forge/linux-64/debugpy-1.6.3-py37hd23a5d3_0.tar.bz2#004724940367fa84ec1d0732c8b27c18
 https://conda.anaconda.org/conda-forge/noarch/decorator-5.1.1-pyhd8ed1ab_0.tar.bz2#43afe5ab04e35e17ba28649471dd7364
 https://conda.anaconda.org/conda-forge/noarch/defusedxml-0.7.1-pyhd8ed1ab_0.tar.bz2#961b3a227b437d82ad7054484cfa71b2
 https://conda.anaconda.org/conda-forge/noarch/entrypoints-0.4-pyhd8ed1ab_0.tar.bz2#3cf04868fee0a029769bd41f4b2fbf2d
@@ -57,6 +58,7 @@ https://conda.anaconda.org/conda-forge/noarch/jupyterlab_widgets-3.0.3-pyhd8ed1a
 https://conda.anaconda.org/conda-forge/linux-64/libcurl-7.86.0-h2283fc2_1.tar.bz2#fdca8cd67ec2676f90a70ac73a32538b
 https://conda.anaconda.org/conda-forge/noarch/mistune-2.0.4-pyhd8ed1ab_0.tar.bz2#78e0a90393b79b378b8ff6d32893d58a
 https://conda.anaconda.org/conda-forge/noarch/nest-asyncio-1.5.6-pyhd8ed1ab_0.tar.bz2#7b868f21adde0d9b8b38f9c16836589b
+https://conda.anaconda.org/conda-forge/noarch/packaging-23.0-pyhd8ed1ab_0.conda#1ff2e3ca41f0ce16afec7190db28288b
 https://conda.anaconda.org/conda-forge/noarch/pamela-1.0.0-py_0.tar.bz2#36f6f18d2f3ae0c93d77a9dbedad08c3
 https://conda.anaconda.org/conda-forge/noarch/pandocfilters-1.5.0-pyhd8ed1ab_0.tar.bz2#457c2c8c08e54905d6954e79cb5b5db9
 https://conda.anaconda.org/conda-forge/noarch/parso-0.8.3-pyhd8ed1ab_0.tar.bz2#17a565a0c3899244e938cdf417e7b094

repo2docker/buildpacks/conda/environment-linux-aarch64.lock

@@ -0,0 +1,148 @@
+# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
+# Frozen on 2023-01-23 12:00:09 UTC
+# Generated by conda-lock.
+# platform: linux-aarch64
+# input_hash: 0a4a7f1713025e05325e2cb2a1336c042deaeb35413c3a951b07a3c8e06390a6
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-aarch64/ca-certificates-2022.12.7-h4fd8a4c_0.conda#2450fbcaf65634e0d071e47e2b8487b4
+https://conda.anaconda.org/conda-forge/linux-aarch64/ld_impl_linux-aarch64-2.39-h16cd69b_1.conda#9daf385ebefaea92087d3a315e398964
+https://conda.anaconda.org/conda-forge/linux-aarch64/libgomp-12.2.0-h607ecd0_19.tar.bz2#65b9cb876525dcb2e74a90cf02c6762a
+https://conda.anaconda.org/conda-forge/linux-aarch64/libstdcxx-ng-12.2.0-hc13a102_19.tar.bz2#981741cd4321edd5c504b48f74fe91f2
+https://conda.anaconda.org/conda-forge/linux-aarch64/pandoc-2.19.2-h8af1aa0_1.tar.bz2#8cbce7de77fba569ba716dcfbfdca8e6
+https://conda.anaconda.org/conda-forge/linux-aarch64/python_abi-3.7-3_cp37m.conda#bef2bd84eb7ce6d6349b1a9de3a361f0
+https://conda.anaconda.org/conda-forge/linux-aarch64/_openmp_mutex-4.5-2_gnu.tar.bz2#6168d71addc746e8f2b8d57dfd2edcea
+https://conda.anaconda.org/conda-forge/linux-aarch64/libgcc-ng-12.2.0-h607ecd0_19.tar.bz2#8456a29b6d9fc3123ccb9a966b6b2c49
+https://conda.anaconda.org/conda-forge/linux-aarch64/c-ares-1.18.1-hf897c2e_0.tar.bz2#12c54b174dd7c6a9331e729d24c39515
+https://conda.anaconda.org/conda-forge/linux-aarch64/icu-70.1-ha18d298_0.tar.bz2#014656d28b7b6f8a566437c69552f9ae
+https://conda.anaconda.org/conda-forge/linux-aarch64/keyutils-1.6.1-h4e544f5_0.tar.bz2#1f24853e59c68892452ef94ddd8afd4b
+https://conda.anaconda.org/conda-forge/linux-aarch64/libev-4.33-h516909a_1.tar.bz2#9eac5901791494108c9b9ab85ca8aa93
+https://conda.anaconda.org/conda-forge/linux-aarch64/libffi-3.4.2-h3557bc0_5.tar.bz2#dddd85f4d52121fab0a8b099c5e06501
+https://conda.anaconda.org/conda-forge/linux-aarch64/libnsl-2.0.0-hf897c2e_0.tar.bz2#36fdbc05c9d9145ece86f5a63c3f352e
+https://conda.anaconda.org/conda-forge/linux-aarch64/libsodium-1.0.18-hb9de7d4_1.tar.bz2#d09ab3c60eebb6f14eb4d07e172775cc
+https://conda.anaconda.org/conda-forge/linux-aarch64/libuv-1.44.2-h4e544f5_0.tar.bz2#58b9dbd5d4bd100e278c3d7e1976f566
+https://conda.anaconda.org/conda-forge/linux-aarch64/libzlib-1.2.13-h4e544f5_4.tar.bz2#88596b6277fe6d39f046983aae6044db
+https://conda.anaconda.org/conda-forge/linux-aarch64/ncurses-6.3-headf329_1.tar.bz2#486b68148e121bc8bbadc3cefae4c04f
+https://conda.anaconda.org/conda-forge/linux-aarch64/openssl-3.0.7-hb4cce97_1.conda#04ef6664eed137b63ebf19ac7fbb59ca
+https://conda.anaconda.org/conda-forge/linux-aarch64/xz-5.2.6-h9cdd2b7_0.tar.bz2#83baad393a31d59c20b63ba4da6592df
+https://conda.anaconda.org/conda-forge/linux-aarch64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#29371161d77933a54fccf1bb66b96529
+https://conda.anaconda.org/conda-forge/linux-aarch64/libnghttp2-1.51.0-h674c3cc_0.conda#b0a33bcd7b010a9f77eba331173a97be
+https://conda.anaconda.org/conda-forge/linux-aarch64/libsqlite-3.40.0-hf9034f9_0.tar.bz2#9afb0d5dbaa403858a660cd0b4a31d29
+https://conda.anaconda.org/conda-forge/linux-aarch64/libssh2-1.10.0-he5a64b1_3.tar.bz2#97a05afae73dc8939078f44732534a47
+https://conda.anaconda.org/conda-forge/linux-aarch64/readline-8.1.2-h38e3740_0.tar.bz2#3cdbfb7d7b63ae2c2d35bb167d257ecd
+https://conda.anaconda.org/conda-forge/linux-aarch64/tk-8.6.12-hd8af866_0.tar.bz2#7894e82ff743bd96c76585ddebe28e2a
+https://conda.anaconda.org/conda-forge/linux-aarch64/zeromq-4.3.4-h01db608_1.tar.bz2#dd56c9ce3f1f689a5e71941830349279
+https://conda.anaconda.org/conda-forge/linux-aarch64/zlib-1.2.13-h4e544f5_4.tar.bz2#dc8395f4a79bb0b13ca7d855c72482d4
+https://conda.anaconda.org/conda-forge/linux-aarch64/krb5-1.20.1-h113d92e_0.conda#c0ac34c76019d6ebfef2d47a5687459c
+https://conda.anaconda.org/conda-forge/linux-aarch64/nodejs-18.12.1-h928fb59_0.tar.bz2#b0ff8fc996c6e50ac2b3e1a5dcc14d34
+https://conda.anaconda.org/conda-forge/linux-aarch64/sqlite-3.40.0-h69ca7e5_0.tar.bz2#ef70a4737971a336d0dbb8913280e5ce
+https://conda.anaconda.org/conda-forge/linux-aarch64/libcurl-7.87.0-h6ad7c7a_0.conda#6e8310f3e0b523e64faa9012d4151ff0
+https://conda.anaconda.org/conda-forge/linux-aarch64/python-3.7.12-h47f6e27_100_cpython.tar.bz2#d7b2c7500aa702c992c285854bef95a7
+https://conda.anaconda.org/conda-forge/noarch/async_generator-1.10-py_0.tar.bz2#d56c596e61b1c4952acf0a9920856c12
+https://conda.anaconda.org/conda-forge/noarch/attrs-22.2.0-pyh71513ae_0.conda#8b76db7818a4e401ed4486c4c1635cd9
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repo2docker/buildpacks/conda/environment.py-3.10.yml

@@ -4,11 +4,11 @@ channels:
 - conda-forge
 dependencies:
 - python=3.10.*
-- nodejs=16
+- nodejs=18
 - pip
 - ipywidgets==8.0.2
 - jupyter-offlinenotebook==0.2.2
-- jupyter-resource-usage==0.6.3
+- jupyter-resource-usage==0.7.0
 - jupyterlab==3.4.8
 - jupyterhub-singleuser==1.5.0
 - notebook==6.4.12

repo2docker/buildpacks/conda/environment.py-3.7-linux-64.lock

@@ -2,7 +2,7 @@
 # Frozen on 2022-11-18 22:33:01 UTC
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: f39cf3a86cdaeb58bee45974ccbdaf3fb51ad41f0bb6f3caf9340c5aad0dfa3b
+# input_hash: 3b780a798011d21422fbbea52f1c94325fc806c944f506d41d0bdf397b93c604
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repo2docker/buildpacks/conda/environment.py-3.7-linux-aarch64.lock

@@ -0,0 +1,148 @@
+# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
+# Frozen on 2023-01-23 12:00:09 UTC
+# Generated by conda-lock.
+# platform: linux-aarch64
+# input_hash: 0a4a7f1713025e05325e2cb2a1336c042deaeb35413c3a951b07a3c8e06390a6
+@EXPLICIT
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repo2docker/buildpacks/conda/environment.py-3.7.yml

@@ -4,11 +4,11 @@ channels:
 - conda-forge
 dependencies:
 - python=3.7.*
-- nodejs=16
+- nodejs=18
 - pip
 - ipywidgets==8.0.2
 - jupyter-offlinenotebook==0.2.2
-- jupyter-resource-usage==0.6.3
+- jupyter-resource-usage==0.7.0
 - jupyterlab==3.4.8
 - jupyterhub-singleuser==1.5.0
 - notebook==6.4.12

repo2docker/buildpacks/conda/environment.py-3.8-linux-64.lock

@@ -2,7 +2,7 @@
 # Frozen on 2022-11-18 22:33:18 UTC
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: e67091c1a370df5b722565831d5e32ce5255b1c0c7faeeed6baa7d7ee7694693
+# input_hash: 3ee9f169b42eac9c4b87b9717811f649e435daf083090ac5504090183c941cce
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2022.9.24-ha878542_0.tar.bz2#41e4e87062433e283696cf384f952ef6
@@ -40,12 +40,13 @@ https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.40.0-h4ff8645_0.tar.bz2
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 https://conda.anaconda.org/conda-forge/noarch/async_generator-1.10-py_0.tar.bz2#d56c596e61b1c4952acf0a9920856c12
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repo2docker/buildpacks/conda/environment.py-3.8.yml

@@ -4,11 +4,11 @@ channels:
 - conda-forge
 dependencies:
 - python=3.8.*
-- nodejs=16
+- nodejs=18
 - pip
 - ipywidgets==8.0.2
 - jupyter-offlinenotebook==0.2.2
-- jupyter-resource-usage==0.6.3
+- jupyter-resource-usage==0.7.0
 - jupyterlab==3.4.8
 - jupyterhub-singleuser==1.5.0
 - notebook==6.4.12

repo2docker/buildpacks/conda/environment.py-3.9-linux-64.lock

@@ -2,7 +2,7 @@
 # Frozen on 2022-11-18 22:33:38 UTC
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: f0b7020f912d4c25c1482bcd0774212f9f4f041ec6eaea0b34676693729dcaf0
+# input_hash: 3e8d6c21102d42dc26862fa21fbba8f868f97a08b274d8fb41d88a36b73e8c77
 @EXPLICIT
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@@ -41,12 +41,13 @@ https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.40.0-h4ff8645_0.tar.bz2
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@@ -55,9 +56,12 @@ https://conda.anaconda.org/conda-forge/noarch/flit-core-3.8.0-pyhd8ed1ab_0.tar.b
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+https://conda.anaconda.org/conda-forge/noarch/jupyterlab_widgets-3.0.5-pyhd8ed1ab_0.conda#953a312b272f37d39fe9d09f46734622
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-7.87.0-hdc1c0ab_0.conda#bc302fa1cf8eda15c60f669b7524a320
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+https://conda.anaconda.org/conda-forge/noarch/packaging-23.0-pyhd8ed1ab_0.conda#1ff2e3ca41f0ce16afec7190db28288b
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@@ -130,6 +134,7 @@ https://conda.anaconda.org/conda-forge/noarch/terminado-0.17.0-pyh41d4057_0.tar.
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+https://conda.anaconda.org/conda-forge/linux-64/jupyter_core-5.1.3-py39hf3d152e_0.conda#d09884a03417a35a8f95d3d3c0310a08
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repo2docker/buildpacks/conda/environment.py-3.9-linux-aarch64.lock

@@ -0,0 +1,157 @@
+# AUTO GENERATED FROM environment.py-3.9.yml, DO NOT MANUALLY MODIFY
+# Frozen on 2023-01-23 12:06:23 UTC
+# Generated by conda-lock.
+# platform: linux-aarch64
+# input_hash: e0f0a4acb21d21a7d3572227f14d5f4dde74c1ef1084ed2b597ab60e25bdbdbb
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-aarch64/ca-certificates-2022.12.7-h4fd8a4c_0.conda#2450fbcaf65634e0d071e47e2b8487b4
+https://conda.anaconda.org/conda-forge/linux-aarch64/ld_impl_linux-aarch64-2.39-h16cd69b_1.conda#9daf385ebefaea92087d3a315e398964
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+https://conda.anaconda.org/conda-forge/noarch/nbclient-0.7.2-pyhd8ed1ab_0.conda#6c7b0d75b66a220274bb5a28c23197f2
+https://conda.anaconda.org/conda-forge/noarch/requests-2.28.2-pyhd8ed1ab_0.conda#11d178fc55199482ee48d6812ea83983
+https://conda.anaconda.org/conda-forge/noarch/ipywidgets-8.0.2-pyhd8ed1ab_1.tar.bz2#81b7f46918555bf911ad2ba2f3259094
+https://conda.anaconda.org/conda-forge/linux-aarch64/jupyterhub-base-1.5.0-py39ha65689a_1.tar.bz2#4a9725abb86dbd756dc201db57022055
+https://conda.anaconda.org/conda-forge/noarch/nbconvert-core-7.2.8-pyhd8ed1ab_0.conda#252899fe1f90aeb0c3391ff32a5035f1
+https://conda.anaconda.org/conda-forge/noarch/jupyter_server-1.23.5-pyhd8ed1ab_0.conda#e3ae1d46749f48a1875b560fca41cb0c
+https://conda.anaconda.org/conda-forge/noarch/nbconvert-pandoc-7.2.8-pyhd8ed1ab_0.conda#701b0db88fe192e1685de29b8ca0840e
+https://conda.anaconda.org/conda-forge/noarch/jupyter-resource-usage-0.7.0-pyhd8ed1ab_0.conda#c57567d49d926826b1f852712ac8acfa
+https://conda.anaconda.org/conda-forge/noarch/jupyterlab_server-2.19.0-pyhd8ed1ab_0.conda#9dc0706ec2f8e13b7a0db9d6a19051ff
+https://conda.anaconda.org/conda-forge/noarch/nbconvert-7.2.8-pyhd8ed1ab_0.conda#8b5cb7073f66beef0d7161406fdb6e8b
+https://conda.anaconda.org/conda-forge/noarch/notebook-shim-0.2.2-pyhd8ed1ab_0.tar.bz2#40be846cd4e78672a40e43db9dae753c
+https://conda.anaconda.org/conda-forge/noarch/nbclassic-0.4.8-pyhd8ed1ab_0.tar.bz2#f4f150f83ed90a1b833e6081bbf38257
+https://conda.anaconda.org/conda-forge/noarch/notebook-6.4.12-pyha770c72_0.tar.bz2#77fc67c5bbea44fd41e8bbe2ac82d1ad
+https://conda.anaconda.org/conda-forge/noarch/jupyter-offlinenotebook-0.2.2-pyh1d7be83_0.tar.bz2#fe55056ce4bc4bd4953ba440270735fb
+https://conda.anaconda.org/conda-forge/linux-aarch64/jupyterhub-singleuser-1.5.0-py39ha65689a_1.tar.bz2#428f24f44794a428a875ee08be6eee31
+https://conda.anaconda.org/conda-forge/noarch/jupyterlab-3.4.8-pyhd8ed1ab_0.tar.bz2#6fbf13b0e8a6fa24bbae91205e8ce467
+https://conda.anaconda.org/conda-forge/noarch/nteract_on_jupyter-2.1.3-py_0.tar.bz2#1430ccd983ae6b161e2fbf4377965f7a

repo2docker/buildpacks/conda/environment.py-3.9.yml

@@ -4,11 +4,11 @@ channels:
 - conda-forge
 dependencies:
 - python=3.9.*
-- nodejs=16
+- nodejs=18
 - pip
 - ipywidgets==8.0.2
 - jupyter-offlinenotebook==0.2.2
-- jupyter-resource-usage==0.6.3
+- jupyter-resource-usage==0.7.0
 - jupyterlab==3.4.8
 - jupyterhub-singleuser==1.5.0
 - notebook==6.4.12

repo2docker/buildpacks/conda/environment.yml

@@ -2,11 +2,11 @@ channels:
   - conda-forge
 dependencies:
   - python=3.7
-  - nodejs=16
+  - nodejs=18
   - pip
   - ipywidgets==8.0.2
   - jupyter-offlinenotebook==0.2.2
-  - jupyter-resource-usage==0.6.3
+  - jupyter-resource-usage==0.7.0
   - jupyterlab==3.4.8
   - jupyterhub-singleuser==1.5.0
   - notebook==6.4.12

repo2docker/buildpacks/conda/freeze.py

@@ -22,7 +22,7 @@ from ruamel.yaml import YAML
 HERE = pathlib.Path(os.path.dirname(os.path.abspath(__file__)))
 
 ENV_FILE = HERE / "environment.yml"
-FROZEN_FILE = os.path.splitext(ENV_FILE)[0] + ".lock"
+FROZEN_FILE_T = os.path.splitext(ENV_FILE)[0] + "-{platform}.lock"
 
 ENV_FILE_T = HERE / "environment.py-{py}.yml"
 
@@ -119,12 +119,21 @@ if __name__ == "__main__":
         help="Python version(s) to update and freeze",
         default=("3.7", "3.8", "3.9", "3.10"),
     )
+    parser.add_argument(
+        "platform",
+        nargs="*",
+        help="Platform(s) to update and freeze",
+        default=("linux-64", "linux-aarch64"),
+    )
     args = parser.parse_args()
     default_py = "3.10"
     for py in args.py:
-        env_file = pathlib.Path(str(ENV_FILE_T).format(py=py))
+        for platform in args.platform:
-        set_python(env_file, py)
+            env_file = pathlib.Path(str(ENV_FILE_T).format(py=py))
-        frozen_file = pathlib.Path(os.path.splitext(env_file)[0] + ".lock")
+            set_python(env_file, py)
-        freeze(env_file, frozen_file)
+            frozen_file = pathlib.Path(
-        if py == default_py:
+                os.path.splitext(env_file)[0] + f"-{platform}.lock"
-            shutil.copy(frozen_file, FROZEN_FILE)
+            )
+            freeze(env_file, frozen_file, platform)
+            if py == default_py:
+                shutil.copy(frozen_file, FROZEN_FILE_T.format(platform=platform))

repo2docker/buildpacks/conda/install-base-env.bash

@@ -5,10 +5,10 @@ set -ex
 
 cd $(dirname $0)
 
-export MAMBA_VERSION=1.0.0
+export MAMBA_VERSION=1.1.0
 export CONDA_VERSION=4.13.0
 
-URL="https://anaconda.org/conda-forge/micromamba/${MAMBA_VERSION}/download/linux-64/micromamba-${MAMBA_VERSION}-0.tar.bz2"
+URL="https://anaconda.org/conda-forge/micromamba/${MAMBA_VERSION}/download/${CONDA_PLATFORM}/micromamba-${MAMBA_VERSION}-0.tar.bz2"
 
 # make sure we don't do anything funky with user's $HOME
 # since this is run as root
@@ -34,6 +34,7 @@ channels:
 auto_update_conda: false
 show_channel_urls: true
 update_dependencies: false
+experimental_sat_error_message: true
 # channel_priority: flexible
 EOT
 

repo2docker/buildpacks/docker.py

@@ -30,6 +30,7 @@ class DockerBuildPack(BuildPack):
         build_args,
         cache_from,
         extra_build_kwargs,
+        platform=None,
     ):
         """Build a Docker image based on the Dockerfile in the source repo."""
         # If you work on this bit of code check the corresponding code in
@@ -55,6 +56,7 @@ class DockerBuildPack(BuildPack):
             container_limits=limits,
             cache_from=cache_from,
             labels=self.get_labels(),
+            platform=platform,
         )
 
         build_kwargs.update(extra_build_kwargs)

repo2docker/buildpacks/julia/julia_project.py

@@ -79,16 +79,25 @@ class JuliaProjectTomlBuildPack(PythonBuildPack):
                 will be installed
             - `JULIA_DEPOT_PATH`: path where Julia libraries are installed.
             - `JULIA_VERSION`: default version of julia to be installed
+            - `JULIA_ARCH`: machine architecture used in Julia download URLs
+            - `JULIA_ARCH_SHORT`: machine architecture used in Julia download URLs
             - `JUPYTER`: environment variable required by IJulia to point to
                 the `jupyter` executable
 
             For example, a tuple may be `('JULIA_VERSION', '0.6.0')`.
 
         """
+        if self.platform == "linux/arm64":
+            julia_arch = julia_arch_short = "aarch64"
+        else:
+            julia_arch = "x86_64"
+            julia_arch_short = "x64"
         return super().get_build_env() + [
             ("JULIA_PATH", "${APP_BASE}/julia"),
             ("JULIA_DEPOT_PATH", "${JULIA_PATH}/pkg"),
             ("JULIA_VERSION", self.julia_version),
+            ("JULIA_ARCH", julia_arch),
+            ("JULIA_ARCH_SHORT", julia_arch_short),
             ("JUPYTER", "${NB_PYTHON_PREFIX}/bin/jupyter"),
             ("JUPYTER_DATA_DIR", "${NB_PYTHON_PREFIX}/share/jupyter"),
         ]
@@ -129,7 +138,7 @@ class JuliaProjectTomlBuildPack(PythonBuildPack):
                 "root",
                 r"""
                 mkdir -p ${JULIA_PATH} && \
-                curl -sSL "https://julialang-s3.julialang.org/bin/linux/x64/${JULIA_VERSION%[.-]*}/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | tar -xz -C ${JULIA_PATH} --strip-components 1
+                curl -sSL "https://julialang-s3.julialang.org/bin/linux/${JULIA_ARCH_SHORT}/${JULIA_VERSION%[.-]*}/julia-${JULIA_VERSION}-linux-${JULIA_ARCH}.tar.gz" | tar -xz -C ${JULIA_PATH} --strip-components 1
                 """,
             ),
             (

repo2docker/buildpacks/julia/julia_require.py

@@ -69,12 +69,19 @@ class JuliaRequireBuildPack(PythonBuildPack):
             - `JULIA_DEPOT_PATH`: path where Julia libraries are installed.
                                   Similar to JULIA_PKGDIR, used in 1.x.
             - `JULIA_VERSION`: default version of julia to be installed
+            - `JULIA_ARCH`: machine architecture used in Julia download URLs
+            - `JULIA_ARCH_SHORT`: machine architecture used in Julia download URLs
             - `JUPYTER`: environment variable required by IJulia to point to
                 the `jupyter` executable
 
             For example, a tuple may be `('JULIA_VERSION', '0.6.0')`.
 
         """
+        if self.platform == "linux/arm64":
+            julia_arch = julia_arch_short = "aarch64"
+        else:
+            julia_arch = "x86_64"
+            julia_arch_short = "x64"
         return super().get_build_env() + [
             ("JULIA_PATH", "${APP_BASE}/julia"),
             ("JULIA_HOME", "${JULIA_PATH}/bin"),  # julia <= 0.6
@@ -82,6 +89,8 @@ class JuliaRequireBuildPack(PythonBuildPack):
             ("JULIA_PKGDIR", "${JULIA_PATH}/pkg"),
             ("JULIA_DEPOT_PATH", "${JULIA_PKGDIR}"),  # julia >= 0.7
             ("JULIA_VERSION", self.julia_version),
+            ("JULIA_ARCH", julia_arch),
+            ("JULIA_ARCH_SHORT", julia_arch_short),
             ("JUPYTER", "${NB_PYTHON_PREFIX}/bin/jupyter"),
         ]
 
@@ -111,7 +120,7 @@ class JuliaRequireBuildPack(PythonBuildPack):
                 "root",
                 r"""
                 mkdir -p ${JULIA_PATH} && \
-                curl -sSL "https://julialang-s3.julialang.org/bin/linux/x64/${JULIA_VERSION%[.-]*}/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | tar -xz -C ${JULIA_PATH} --strip-components 1
+                curl -sSL "https://julialang-s3.julialang.org/bin/linux/${JULIA_ARCH_SHORT}/${JULIA_VERSION%[.-]*}/julia-${JULIA_VERSION}-linux-${JULIA_ARCH}.tar.gz" | tar -xz -C ${JULIA_PATH} --strip-components 1
                 """,
             ),
             (

repo2docker/buildpacks/nix/__init__.py

@@ -13,6 +13,7 @@ class NixBuildPack(BaseImage):
 
     def get_env(self):
         """Ordered list of environment variables to be set for this image"""
+
         return super().get_env() + [
             ("NIX_PATH", "nixpkgs=/home/${NB_USER}/.nix-defexpr/channels/nixpkgs"),
             ("NIX_SSL_CERT_FILE", "/etc/ssl/certs/ca-certificates.crt"),
@@ -30,6 +31,10 @@ class NixBuildPack(BaseImage):
          - install nix package manager for user
 
         """
+        if self.platform == "linux/arm64":
+            nix_arch = "aarch64"
+        else:
+            nix_arch = "x86_64"
         return super().get_build_scripts() + [
             (
                 "root",
@@ -43,9 +48,9 @@ class NixBuildPack(BaseImage):
             ),
             (
                 "${NB_USER}",
-                """
+                f"""
-            bash /home/${NB_USER}/.local/bin/install-nix.bash && \
+            NIX_ARCH={nix_arch} bash /home/${{NB_USER}}/.local/bin/install-nix.bash && \
-            rm /home/${NB_USER}/.local/bin/install-nix.bash
+            rm /home/${{NB_USER}}/.local/bin/install-nix.bash
             """,
             ),
         ]

repo2docker/buildpacks/nix/install-nix.bash

@@ -3,12 +3,16 @@
 set -ex
 
 NIX_VERSION="2.3.9"
-NIX_SHA256="49763fd7fa06bcb712ced2f3f11afd275e3a4d7bc5ff0d6fd1d50a4c3ce7bbf4"
+if [ "$NIX_ARCH" = "aarch64" ]; then
+  NIX_SHA256="733a26911193fdd44d5d68342075af5924d8c0701aae877e51a38d74ee9f4ff8"
+else
+  NIX_SHA256="49763fd7fa06bcb712ced2f3f11afd275e3a4d7bc5ff0d6fd1d50a4c3ce7bbf4"
+fi
 
 # Do all our operations in /tmp, since we can't rely on current directory being writeable yet.
 cd /tmp
-wget --quiet https://nixos.org/releases/nix/nix-$NIX_VERSION/nix-$NIX_VERSION-x86_64-linux.tar.xz
+wget --quiet https://nixos.org/releases/nix/nix-$NIX_VERSION/nix-$NIX_VERSION-$NIX_ARCH-linux.tar.xz
-echo "$NIX_SHA256  nix-$NIX_VERSION-x86_64-linux.tar.xz" | sha256sum -c
+echo "$NIX_SHA256  nix-$NIX_VERSION-$NIX_ARCH-linux.tar.xz" | sha256sum -c
-tar xJf nix-*-x86_64-linux.tar.xz
+tar xJf nix-*-$NIX_ARCH-linux.tar.xz
-sh nix-*-x86_64-linux/install
+sh nix-*-$NIX_ARCH-linux/install
-rm -r nix-*-x86_64-linux*
+rm -r nix-*-$NIX_ARCH-linux*

repo2docker/buildpacks/r.py

@@ -277,6 +277,10 @@ class RBuildPack(PythonBuildPack):
 
         cran_mirror_url = self.get_cran_mirror_url(self.checkpoint_date)
 
+        if self.platform != "linux/amd64":
+            raise RuntimeError(
+                f"RStudio is only available for linux/amd64 ({self.platform})"
+            )
         scripts = [
             (
                 "root",

repo2docker/docker.py

@@ -91,6 +91,7 @@ class DockerEngine(ContainerEngine):
         fileobj=None,
         path="",
         labels=None,
+        platform=None,
         **kwargs,
     ):
         return self._apiclient.build(
@@ -106,7 +107,7 @@ class DockerEngine(ContainerEngine):
             fileobj=fileobj,
             path=path,
             labels=labels,
-            platform="linux/amd64",
+            platform=platform,
             **kwargs,
         )
 

repo2docker/engine.py

@@ -177,6 +177,7 @@ class ContainerEngine(LoggingConfigurable):
         fileobj=None,
         path="",
         labels=None,
+        platform=None,
         **kwargs,
     ):
         """
@@ -207,6 +208,8 @@ class ContainerEngine(LoggingConfigurable):
             path to the Dockerfile
         labels : dict
             Dictionary of labels to set on the image
+        platform: str
+            Platform to build for
 
         Returns
         -------

repo2docker/utils.py

@@ -1,6 +1,8 @@
 import os
+import platform
 import re
 import subprocess
+import warnings
 from contextlib import contextmanager
 from enum import Enum
 from functools import partial
@@ -524,3 +526,22 @@ def is_local_pip_requirement(line):
         return True
 
     return False
+
+
+def get_platform():
+    """Return the target platform of the container image
+
+    Returns either `linux/amd64` or `linux/arm64`
+    """
+    m = platform.machine()
+    if m == "x86_64":
+        return "linux/amd64"
+    elif m == "aarch64":
+        # Linux reports aarch64
+        return "linux/arm64"
+    elif m == "arm64":
+        # OSX reports arm64
+        return "linux/arm64"
+    else:
+        warnings.warn(f"Unexpected platform '{m}', defaulting to linux/amd64")
+        return "linux/amd64"

tests/base/node/verify

@@ -5,7 +5,7 @@ set -ex
 # check node system package and its version
 which node
 node --version
-node --version | grep v16
+node --version | grep v18
 
 which npm
 npm --version

tests/conda/py35-binder-dir/verify

@@ -5,12 +5,12 @@ from subprocess import check_output
 assert sys.version_info[:2] == (3, 5), sys.version
 
 out = check_output(["micromamba", "--version"]).decode("utf8").strip()
-assert out == "1.0.0", out
+assert out == "1.1.0", out
 
 out = check_output(["mamba", "--version"]).decode("utf8").strip()
 assert (
     out
-    == """mamba 1.0.0
+    == """mamba 1.1.0
 conda 4.13.0"""
 ), out
 

tests/external/reproductions.repos.yaml

@@ -12,12 +12,12 @@
 # Test that a full remote/ref works
 - name: Binder Examples - Requirements
   url: https://github.com/binder-examples/requirements
-  ref: origin/master
+  ref: origin/main
   verify: python -c 'import matplotlib'
 # Test that ref is added to branch if not present
 - name: Binder Examples - Requirements
   url: https://github.com/binder-examples/requirements
-  ref: master
+  ref: main
   verify: python -c 'import matplotlib'
 # Test that tags work + ref is added to tag if not present
 - name: Binder Examples - Requirements

tests/unit/contentproviders/test_dataverse.py

@@ -95,7 +95,6 @@ def test_detect_dataverse(test_input, expected, requests_mock):
 
 @pytest.fixture
 def dv_files(tmpdir):
-
     f1 = tmpdir.join("some-file.txt")
     f1.write("some content")
 

tests/unit/contentproviders/test_hydroshare.py

@@ -35,7 +35,6 @@ hydroshare_data = {
 
 
 def test_content_id(requests_mock):
-
     requests_mock.get(re.compile("https://"), json=hydroshare_data)
     requests_mock.get(re.compile("https://doi.org"), json=doi_resolver)
 

tests/unit/test_utils.py

@@ -2,6 +2,7 @@
 Tests for repo2docker/utils.py
 """
 import os
+import platform
 import subprocess
 import tempfile
 
@@ -160,3 +161,17 @@ def test_open_guess_encoding():
 )
 def test_local_pip_requirement(req, is_local):
     assert utils.is_local_pip_requirement(req) == is_local
+
+
+@pytest.mark.parametrize(
+    "machine_name,expected",
+    [
+        ("x86_64", "linux/amd64"),
+        ("aarch64", "linux/arm64"),
+        ("arm64", "linux/arm64"),
+        ("other", "linux/amd64"),
+    ],
+)
+def test_get_platform(monkeypatch, machine_name, expected):
+    monkeypatch.setattr(platform, "machine", lambda: machine_name)
+    assert utils.get_platform() == expected