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Merge pull request #840 from minrk/py38 

Python 3.8 support
pull/842/head
Tim Head 2020-01-30 16:10:37 +01:00 zatwierdzone przez GitHub
rodzic eb0ea0a54c ef9daa26e5
commit 356ea10868
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ID klucza GPG: 4AEE18F83AFDEB23
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128
repo2docker/buildpacks/conda/environment.frozen.yml
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@ -1,102 +1,112 @@
# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY # AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
# Frozen on 2019-09-13 19:50:21 UTC # Frozen on 2020-01-30 10:54:05 UTC
name: r2d name: r2d
channels: channels:
- conda-forge - conda-forge
- defaults - defaults
- conda-forge/label/broken - conda-forge/label/broken
dependencies: dependencies:
- _libgcc_mutex=0.1=main - _libgcc_mutex=0.1=conda_forge
- alembic=1.1.0=py_0 - _openmp_mutex=4.5=0_gnu
- asn1crypto=0.24.0=py37_1003 - alembic=1.3.3=py_0
- async_generator=1.10=py_0 - async_generator=1.10=py_0
- attrs=19.1.0=py_0 - attrs=19.3.0=py_0
- backcall=0.1.0=py_0 - backcall=0.1.0=py_0
- bleach=3.1.0=py_0 - bleach=3.1.0=py_0
- blinker=1.4=py_1 - blinker=1.4=py_1
- bzip2=1.0.8=h516909a_1 - ca-certificates=2019.11.28=hecc5488_0
- ca-certificates=2019.9.11=hecc5488_0 - certifi=2019.11.28=py37_0
- certifi=2019.9.11=py37_0
- certipy=0.1.3=py_0 - certipy=0.1.3=py_0
- cffi=1.12.3=py37h8022711_0 - cffi=1.13.2=py37h8022711_0
- chardet=3.0.4=py37_1003 - chardet=3.0.4=py37_1003
- configurable-http-proxy=4.1.0=node11_1 - cryptography=2.8=py37h72c5cf5_1
- cryptography=2.7=py37h72c5cf5_0 - decorator=4.4.1=py_0
- decorator=4.4.0=py_0 - defusedxml=0.6.0=py_0
- defusedxml=0.5.0=py_1
- entrypoints=0.3=py37_1000 - entrypoints=0.3=py37_1000
- idna=2.8=py37_1000 - idna=2.8=py37_1000
- ipykernel=5.1.2=py37h5ca1d4c_0 - importlib_metadata=1.5.0=py37_0
- ipython=7.8.0=py37h5ca1d4c_0 - inflect=4.0.0=py37_1
- ipykernel=5.1.4=py37h5ca1d4c_0
- ipython=7.11.1=py37h5ca1d4c_0
- ipython_genutils=0.2.0=py_1 - ipython_genutils=0.2.0=py_1
- ipywidgets=7.4.2=py_0 - ipywidgets=7.5.1=py_0
- jedi=0.15.1=py37_0 - jaraco.itertools=5.0.0=py_0
- jinja2=2.10.1=py_0 - jedi=0.16.0=py37_0
- jsonschema=3.0.2=py37_0 - jinja2=2.11.0=py_0
- jupyter_client=5.3.1=py_0 - json5=0.8.5=py_0
- jupyter_core=4.4.0=py_0 - jsonschema=3.2.0=py37_0
- jupyterhub=1.0.0=py37_0 - jupyter_client=5.3.4=py37_1
- jupyterlab=0.35.4=py37_0 - jupyter_core=4.6.1=py37_0
- jupyterlab_server=0.2.0=py_0 - jupyter_telemetry=0.0.4=py_0
- krb5=1.16.3=h05b26f9_1001 - jupyterhub-base=1.1.0=py37_2
- jupyterhub-singleuser=1.1.0=py37_2
- jupyterlab=1.2.6=py_0
- jupyterlab_server=1.0.6=py_0
- krb5=1.16.4=h2fd8d38_0
- ld_impl_linux-64=2.33.1=h53a641e_8
- libcurl=7.65.3=hda55be3_0 - libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001 - libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006 - libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.1.0=hdf63c60_0 - libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0 - libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2 - libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.1.0=hdf63c60_0 - libstdcxx-ng=9.2.0=hdf63c60_2
- mako=1.1.0=py_0 - mako=1.1.0=py_0
- markupsafe=1.1.1=py37h14c3975_0 - markupsafe=1.1.1=py37h516909a_0
- mistune=0.8.4=py37h14c3975_1000 - mistune=0.8.4=py37h516909a_1000
- nbconvert=5.4.1=py_2 - more-itertools=8.2.0=py_0
- nbformat=4.4.0=py_1 - nbconvert=5.6.1=py37_0
- nbformat=5.0.4=py_0
- ncurses=6.1=hf484d3e_1002 - ncurses=6.1=hf484d3e_1002
- nodejs=11.14.0=he1b5a44_1 - notebook=6.0.3=py37_0
- notebook=5.7.8=py37_1
- nteract_on_jupyter=2.1.3=py_0 - nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0 - oauthlib=3.0.1=py_0
- openssl=1.1.1c=h516909a_0 - openssl=1.1.1d=h516909a_0
- pamela=1.0.0=py_0 - pamela=1.0.0=py_0
- pandoc=2.7.3=0 - pandoc=2.9.1.1=0
- pandocfilters=1.4.2=py_1 - pandocfilters=1.4.2=py_1
- parso=0.5.1=py_0 - parso=0.6.0=py_0
- pexpect=4.7.0=py37_0 - pexpect=4.8.0=py37_0
- pickleshare=0.7.5=py37_1000 - pickleshare=0.7.5=py37_1000
- pip=19.2.3=py37_0 - pip=20.0.2=py37_0
- prometheus_client=0.7.1=py_0 - prometheus_client=0.7.1=py_0
- prompt_toolkit=2.0.9=py_0 - prompt_toolkit=3.0.3=py_0
- ptyprocess=0.6.0=py_1001 - ptyprocess=0.6.0=py_1001
- pycparser=2.19=py37_1 - pycparser=2.19=py37_1
- pycurl=7.43.0.2=py37h16ce93b_1 - pycurl=7.43.0.5=py37h16ce93b_0
- pygments=2.4.2=py_0 - pygments=2.5.2=py_0
- pyjwt=1.7.1=py_0 - pyjwt=1.7.1=py_0
- pyopenssl=19.0.0=py37_0 - pyopenssl=19.1.0=py37_0
- pyrsistent=0.15.4=py37h516909a_0 - pyrsistent=0.15.7=py37h516909a_0
- pysocks=1.7.0=py37_0 - pysocks=1.7.1=py37_0
- python=3.7.3=h33d41f4_1 - python=3.7.6=h357f687_2
- python-dateutil=2.8.0=py_0 - python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0 - python-editor=1.0.4=py_0
- pyzmq=18.1.0=py37h1768529_0 - python-json-logger=0.1.11=py_0
- pyzmq=18.1.1=py37h1768529_0
- readline=8.0=hf8c457e_0 - readline=8.0=hf8c457e_0
- requests=2.22.0=py37_1 - requests=2.22.0=py37_1
- ruamel.yaml=0.16.6=py37h516909a_0
- ruamel.yaml.clib=0.2.0=py37h516909a_0
- send2trash=1.5.0=py_0 - send2trash=1.5.0=py_0
- setuptools=41.2.0=py37_0 - setuptools=45.1.0=py37_0
- six=1.12.0=py37_1000 - six=1.14.0=py37_0
- sqlalchemy=1.3.8=py37h516909a_0 - sqlalchemy=1.3.13=py37h516909a_0
- sqlite=3.29.0=hcee41ef_1 - sqlite=3.30.1=hcee41ef_0
- terminado=0.8.2=py37_0 - terminado=0.8.3=py37_0
- testpath=0.4.2=py_1001 - testpath=0.4.4=py_0
- tk=8.6.9=hed695b0_1003 - tk=8.6.10=hed695b0_0
- tornado=6.0.3=py37h516909a_0 - tornado=6.0.3=py37h516909a_0
- traitlets=4.3.2=py37_1000 - traitlets=4.3.3=py37_0
- urllib3=1.25.3=py37_0 - urllib3=1.25.7=py37_0
- wcwidth=0.1.7=py_1 - wcwidth=0.1.8=py_0
- webencodings=0.5.1=py_1 - webencodings=0.5.1=py_1
- wheel=0.33.6=py37_0 - wheel=0.34.1=py37_0
- widgetsnbextension=3.4.2=py37_1000 - widgetsnbextension=3.5.1=py37_0
- xz=5.2.4=h14c3975_1001 - xz=5.2.4=h14c3975_1001
- zeromq=4.3.2=he1b5a44_2 - zeromq=4.3.2=he1b5a44_2
- zipp=2.1.0=py_0
- zlib=1.2.11=h516909a_1006 - zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d prefix: /opt/conda/envs/r2d

54
repo2docker/buildpacks/conda/environment.py-2.7.frozen.yml
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@ -1,52 +1,56 @@
# AUTO GENERATED FROM environment.py-2.7.yml, DO NOT MANUALLY MODIFY # AUTO GENERATED FROM environment.py-2.7.yml, DO NOT MANUALLY MODIFY
# Frozen on 2019-09-13 19:45:51 UTC # Frozen on 2020-01-27 12:28:36 UTC
name: r2d name: r2d
channels: channels:
- conda-forge - conda-forge
- defaults - defaults
- conda-forge/label/broken - conda-forge/label/broken
dependencies: dependencies:
- _libgcc_mutex=0.1=main - _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- backports=1.0=py_2 - backports=1.0=py_2
- backports.shutil_get_terminal_size=1.0.0=py_3 - backports.shutil_get_terminal_size=1.0.0=py_3
- backports_abc=0.5=py_1 - backports_abc=0.5=py_1
- ca-certificates=2019.9.11=hecc5488_0 - ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.9.11=py27_0 - certifi=2019.11.28=py27_0
- decorator=4.4.0=py_0 - configparser=3.7.3=py27_1
- enum34=1.1.6=py27_1001 - decorator=4.4.1=py_0
- entrypoints=0.3=py27_1000
- enum34=1.1.6=py27_1002
- futures=3.3.0=py27_0 - futures=3.3.0=py27_0
- ipykernel=4.8.2=py27_0 - ipykernel=4.8.2=py27_0
- ipython=5.8.0=py27_0 - ipython=5.8.0=py27_1
- ipython_genutils=0.2.0=py_1 - ipython_genutils=0.2.0=py_1
- jupyter_client=5.3.1=py_0 - jupyter_client=5.3.4=py27_1
- jupyter_core=4.4.0=py_0 - jupyter_core=4.6.1=py27_0
- libffi=3.2.1=he1b5a44_1006 - libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.1.0=hdf63c60_0 - libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0 - libsodium=1.0.17=h516909a_0
- libstdcxx-ng=9.1.0=hdf63c60_0 - libstdcxx-ng=9.2.0=hdf63c60_2
- ncurses=6.1=hf484d3e_1002 - ncurses=6.1=hf484d3e_1002
- openssl=1.1.1c=h516909a_0 - openssl=1.1.1d=h516909a_0
- pathlib2=2.3.4=py27_0 - pathlib2=2.3.5=py27_0
- pexpect=4.7.0=py27_0 - pexpect=4.8.0=py27_0
- pickleshare=0.7.5=py27_1000 - pickleshare=0.7.5=py27_1000
- pip=19.2.3=py27_0 - pip=20.0.2=py27_0
- prompt_toolkit=1.0.15=py_1 - prompt_toolkit=1.0.15=py_1
- ptyprocess=0.6.0=py_1001 - ptyprocess=0.6.0=py_1001
- pygments=2.4.2=py_0 - pygments=2.5.2=py_0
- python=2.7.15=h5a48372_1009 - python=2.7.15=h5a48372_1009
- python-dateutil=2.8.0=py_0 - python-dateutil=2.8.1=py_0
- pyzmq=18.1.0=py27h1768529_0 - pyzmq=18.1.1=py27h1768529_0
- readline=8.0=hf8c457e_0 - readline=8.0=hf8c457e_0
- scandir=1.10.0=py27h14c3975_0 - scandir=1.10.0=py27h516909a_0
- setuptools=41.2.0=py27_0 - setuptools=44.0.0=py27_0
- simplegeneric=0.8.1=py_1 - simplegeneric=0.8.1=py_1
- singledispatch=3.4.0.3=py27_1000 - singledispatch=3.4.0.3=py27_1000
- six=1.12.0=py27_1000 - six=1.14.0=py27_0
- sqlite=3.29.0=hcee41ef_1 - sqlite=3.30.1=hcee41ef_0
- tk=8.6.9=hed695b0_1003 - tk=8.6.10=hed695b0_0
- tornado=5.1.1=py27h14c3975_1000 - tornado=5.1.1=py27h14c3975_1000
- traitlets=4.3.2=py27_1000 - traitlets=4.3.3=py27_0
- wcwidth=0.1.7=py_1 - wcwidth=0.1.8=py_0
- wheel=0.33.6=py27_0 - wheel=0.33.6=py27_0
- zeromq=4.3.2=he1b5a44_2 - zeromq=4.3.2=he1b5a44_2
- zlib=1.2.11=h516909a_1006 - zlib=1.2.11=h516909a_1006

126
repo2docker/buildpacks/conda/environment.py-3.6.frozen.yml
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@ -1,101 +1,111 @@
# AUTO GENERATED FROM environment.py-3.6.yml, DO NOT MANUALLY MODIFY # AUTO GENERATED FROM environment.py-3.6.yml, DO NOT MANUALLY MODIFY
# Frozen on 2019-09-13 19:47:35 UTC # Frozen on 2020-01-30 10:54:21 UTC
name: r2d name: r2d
channels: channels:
- conda-forge - conda-forge
- defaults - defaults
- conda-forge/label/broken - conda-forge/label/broken
dependencies: dependencies:
- _libgcc_mutex=0.1=main - _libgcc_mutex=0.1=conda_forge
- alembic=1.1.0=py_0 - _openmp_mutex=4.5=0_gnu
- asn1crypto=0.24.0=py36_1003 - alembic=1.3.3=py_0
- async_generator=1.10=py_0 - async_generator=1.10=py_0
- attrs=19.1.0=py_0 - attrs=19.3.0=py_0
- backcall=0.1.0=py_0 - backcall=0.1.0=py_0
- bleach=3.1.0=py_0 - bleach=3.1.0=py_0
- blinker=1.4=py_1 - blinker=1.4=py_1
- ca-certificates=2019.9.11=hecc5488_0 - ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.9.11=py36_0 - certifi=2019.11.28=py36_0
- certipy=0.1.3=py_0 - certipy=0.1.3=py_0
- cffi=1.12.3=py36h8022711_0 - cffi=1.13.2=py36h8022711_0
- chardet=3.0.4=py36_1003 - chardet=3.0.4=py36_1003
- configurable-http-proxy=4.1.0=node11_1 - cryptography=2.8=py36h72c5cf5_1
- cryptography=2.7=py36h72c5cf5_0 - decorator=4.4.1=py_0
- decorator=4.4.0=py_0 - defusedxml=0.6.0=py_0
- defusedxml=0.5.0=py_1
- entrypoints=0.3=py36_1000 - entrypoints=0.3=py36_1000
- idna=2.8=py36_1000 - idna=2.8=py36_1000
- ipykernel=5.1.2=py36h5ca1d4c_0 - importlib_metadata=1.5.0=py36_0
- ipython=7.8.0=py36h5ca1d4c_0 - inflect=4.0.0=py36_1
- ipykernel=5.1.4=py36h5ca1d4c_0
- ipython=7.11.1=py36h5ca1d4c_0
- ipython_genutils=0.2.0=py_1 - ipython_genutils=0.2.0=py_1
- ipywidgets=7.4.2=py_0 - ipywidgets=7.5.1=py_0
- jedi=0.15.1=py36_0 - jaraco.itertools=5.0.0=py_0
- jinja2=2.10.1=py_0 - jedi=0.16.0=py36_0
- jsonschema=3.0.2=py36_0 - jinja2=2.11.0=py_0
- jupyter_client=5.3.1=py_0 - json5=0.8.5=py_0
- jupyter_core=4.4.0=py_0 - jsonschema=3.2.0=py36_0
- jupyterhub=1.0.0=py36_0 - jupyter_client=5.3.4=py36_1
- jupyterlab=0.35.4=py36_0 - jupyter_core=4.6.1=py36_0
- jupyterlab_server=0.2.0=py_0 - jupyter_telemetry=0.0.4=py_0
- krb5=1.16.3=h05b26f9_1001 - jupyterhub-base=1.1.0=py36_2
- jupyterhub-singleuser=1.1.0=py36_2
- jupyterlab=1.2.6=py_0
- jupyterlab_server=1.0.6=py_0
- krb5=1.16.4=h2fd8d38_0
- libcurl=7.65.3=hda55be3_0 - libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001 - libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006 - libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.1.0=hdf63c60_0 - libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0 - libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2 - libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.1.0=hdf63c60_0 - libstdcxx-ng=9.2.0=hdf63c60_2
- mako=1.1.0=py_0 - mako=1.1.0=py_0
- markupsafe=1.1.1=py36h14c3975_0 - markupsafe=1.1.1=py36h516909a_0
- mistune=0.8.4=py36h14c3975_1000 - mistune=0.8.4=py36h516909a_1000
- nbconvert=5.4.1=py_2 - more-itertools=8.2.0=py_0
- nbformat=4.4.0=py_1 - nbconvert=5.6.1=py36_0
- nbformat=5.0.4=py_0
- ncurses=6.1=hf484d3e_1002 - ncurses=6.1=hf484d3e_1002
- nodejs=11.14.0=he1b5a44_1 - notebook=6.0.3=py36_0
- notebook=5.7.8=py36_1
- nteract_on_jupyter=2.1.3=py_0 - nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0 - oauthlib=3.0.1=py_0
- openssl=1.1.1c=h516909a_0 - openssl=1.1.1d=h516909a_0
- pamela=1.0.0=py_0 - pamela=1.0.0=py_0
- pandoc=2.7.3=0 - pandoc=2.9.1.1=0
- pandocfilters=1.4.2=py_1 - pandocfilters=1.4.2=py_1
- parso=0.5.1=py_0 - parso=0.6.0=py_0
- pexpect=4.7.0=py36_0 - pexpect=4.8.0=py36_0
- pickleshare=0.7.5=py36_1000 - pickleshare=0.7.5=py36_1000
- pip=19.2.3=py36_0 - pip=20.0.2=py36_0
- prometheus_client=0.7.1=py_0 - prometheus_client=0.7.1=py_0
- prompt_toolkit=2.0.9=py_0 - prompt_toolkit=3.0.3=py_0
- ptyprocess=0.6.0=py_1001 - ptyprocess=0.6.0=py_1001
- pycparser=2.19=py36_1 - pycparser=2.19=py36_1
- pycurl=7.43.0.2=py36h16ce93b_1 - pycurl=7.43.0.5=py36h16ce93b_0
- pygments=2.4.2=py_0 - pygments=2.5.2=py_0
- pyjwt=1.7.1=py_0 - pyjwt=1.7.1=py_0
- pyopenssl=19.0.0=py36_0 - pyopenssl=19.1.0=py36_0
- pyrsistent=0.15.4=py36h516909a_0 - pyrsistent=0.15.7=py36h516909a_0
- pysocks=1.7.0=py36_0 - pysocks=1.7.1=py36_0
- python=3.6.7=h357f687_1005 - python=3.6.7=h357f687_1006
- python-dateutil=2.8.0=py_0 - python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0 - python-editor=1.0.4=py_0
- pyzmq=18.1.0=py36h1768529_0 - python-json-logger=0.1.11=py_0
- pyzmq=18.1.1=py36h1768529_0
- readline=8.0=hf8c457e_0 - readline=8.0=hf8c457e_0
- requests=2.22.0=py36_1 - requests=2.22.0=py36_1
- ruamel.yaml=0.16.6=py36h516909a_0
- ruamel.yaml.clib=0.2.0=py36h516909a_0
- send2trash=1.5.0=py_0 - send2trash=1.5.0=py_0
- setuptools=41.2.0=py36_0 - setuptools=45.1.0=py36_0
- six=1.12.0=py36_1000 - six=1.14.0=py36_0
- sqlalchemy=1.3.8=py36h516909a_0 - sqlalchemy=1.3.13=py36h516909a_0
- sqlite=3.29.0=hcee41ef_1 - sqlite=3.30.1=hcee41ef_0
- terminado=0.8.2=py36_0 - terminado=0.8.3=py36_0
- testpath=0.4.2=py_1001 - testpath=0.4.4=py_0
- tk=8.6.9=hed695b0_1003 - tk=8.6.10=hed695b0_0
- tornado=6.0.3=py36h516909a_0 - tornado=6.0.3=py36h516909a_0
- traitlets=4.3.2=py36_1000 - traitlets=4.3.3=py36_0
- urllib3=1.25.3=py36_0 - urllib3=1.25.7=py36_0
- wcwidth=0.1.7=py_1 - wcwidth=0.1.8=py_0
- webencodings=0.5.1=py_1 - webencodings=0.5.1=py_1
- wheel=0.33.6=py36_0 - wheel=0.34.1=py36_0
- widgetsnbextension=3.4.2=py36_1000 - widgetsnbextension=3.5.1=py36_0
- xz=5.2.4=h14c3975_1001 - xz=5.2.4=h14c3975_1001
- zeromq=4.3.2=he1b5a44_2 - zeromq=4.3.2=he1b5a44_2
- zipp=2.1.0=py_0
- zlib=1.2.11=h516909a_1006 - zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d prefix: /opt/conda/envs/r2d

12
repo2docker/buildpacks/conda/environment.py-3.6.yml
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@ -1,10 +1,10 @@
# AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY # AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
# Generated on 2019-09-13 19:47:35 UTC # Generated on 2020-01-30 10:54:21 UTC
dependencies: dependencies:
- python=3.6.* - python=3.6.*
- ipywidgets==7.4.2 - ipywidgets==7.5.1
- jupyterlab==0.35.4 - jupyterlab==1.2.6
- jupyterhub=1.0 - jupyterhub-singleuser==1.1.0
- nbconvert==5.4.1 - nbconvert==5.6.1
- notebook==5.7.8 - notebook==6.0.3
- nteract_on_jupyter==2.1.3 - nteract_on_jupyter==2.1.3

128
repo2docker/buildpacks/conda/environment.py-3.7.frozen.yml
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@ -1,102 +1,112 @@
# AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY # AUTO GENERATED FROM environment.py-3.7.yml, DO NOT MANUALLY MODIFY
# Frozen on 2019-09-13 19:50:21 UTC # Frozen on 2020-01-30 10:54:05 UTC
name: r2d name: r2d
channels: channels:
- conda-forge - conda-forge
- defaults - defaults
- conda-forge/label/broken - conda-forge/label/broken
dependencies: dependencies:
- _libgcc_mutex=0.1=main - _libgcc_mutex=0.1=conda_forge
- alembic=1.1.0=py_0 - _openmp_mutex=4.5=0_gnu
- asn1crypto=0.24.0=py37_1003 - alembic=1.3.3=py_0
- async_generator=1.10=py_0 - async_generator=1.10=py_0
- attrs=19.1.0=py_0 - attrs=19.3.0=py_0
- backcall=0.1.0=py_0 - backcall=0.1.0=py_0
- bleach=3.1.0=py_0 - bleach=3.1.0=py_0
- blinker=1.4=py_1 - blinker=1.4=py_1
- bzip2=1.0.8=h516909a_1 - ca-certificates=2019.11.28=hecc5488_0
- ca-certificates=2019.9.11=hecc5488_0 - certifi=2019.11.28=py37_0
- certifi=2019.9.11=py37_0
- certipy=0.1.3=py_0 - certipy=0.1.3=py_0
- cffi=1.12.3=py37h8022711_0 - cffi=1.13.2=py37h8022711_0
- chardet=3.0.4=py37_1003 - chardet=3.0.4=py37_1003
- configurable-http-proxy=4.1.0=node11_1 - cryptography=2.8=py37h72c5cf5_1
- cryptography=2.7=py37h72c5cf5_0 - decorator=4.4.1=py_0
- decorator=4.4.0=py_0 - defusedxml=0.6.0=py_0
- defusedxml=0.5.0=py_1
- entrypoints=0.3=py37_1000 - entrypoints=0.3=py37_1000
- idna=2.8=py37_1000 - idna=2.8=py37_1000
- ipykernel=5.1.2=py37h5ca1d4c_0 - importlib_metadata=1.5.0=py37_0
- ipython=7.8.0=py37h5ca1d4c_0 - inflect=4.0.0=py37_1
- ipykernel=5.1.4=py37h5ca1d4c_0
- ipython=7.11.1=py37h5ca1d4c_0
- ipython_genutils=0.2.0=py_1 - ipython_genutils=0.2.0=py_1
- ipywidgets=7.4.2=py_0 - ipywidgets=7.5.1=py_0
- jedi=0.15.1=py37_0 - jaraco.itertools=5.0.0=py_0
- jinja2=2.10.1=py_0 - jedi=0.16.0=py37_0
- jsonschema=3.0.2=py37_0 - jinja2=2.11.0=py_0
- jupyter_client=5.3.1=py_0 - json5=0.8.5=py_0
- jupyter_core=4.4.0=py_0 - jsonschema=3.2.0=py37_0
- jupyterhub=1.0.0=py37_0 - jupyter_client=5.3.4=py37_1
- jupyterlab=0.35.4=py37_0 - jupyter_core=4.6.1=py37_0
- jupyterlab_server=0.2.0=py_0 - jupyter_telemetry=0.0.4=py_0
- krb5=1.16.3=h05b26f9_1001 - jupyterhub-base=1.1.0=py37_2
- jupyterhub-singleuser=1.1.0=py37_2
- jupyterlab=1.2.6=py_0
- jupyterlab_server=1.0.6=py_0
- krb5=1.16.4=h2fd8d38_0
- ld_impl_linux-64=2.33.1=h53a641e_8
- libcurl=7.65.3=hda55be3_0 - libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001 - libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006 - libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.1.0=hdf63c60_0 - libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0 - libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2 - libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.1.0=hdf63c60_0 - libstdcxx-ng=9.2.0=hdf63c60_2
- mako=1.1.0=py_0 - mako=1.1.0=py_0
- markupsafe=1.1.1=py37h14c3975_0 - markupsafe=1.1.1=py37h516909a_0
- mistune=0.8.4=py37h14c3975_1000 - mistune=0.8.4=py37h516909a_1000
- nbconvert=5.4.1=py_2 - more-itertools=8.2.0=py_0
- nbformat=4.4.0=py_1 - nbconvert=5.6.1=py37_0
- nbformat=5.0.4=py_0
- ncurses=6.1=hf484d3e_1002 - ncurses=6.1=hf484d3e_1002
- nodejs=11.14.0=he1b5a44_1 - notebook=6.0.3=py37_0
- notebook=5.7.8=py37_1
- nteract_on_jupyter=2.1.3=py_0 - nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0 - oauthlib=3.0.1=py_0
- openssl=1.1.1c=h516909a_0 - openssl=1.1.1d=h516909a_0
- pamela=1.0.0=py_0 - pamela=1.0.0=py_0
- pandoc=2.7.3=0 - pandoc=2.9.1.1=0
- pandocfilters=1.4.2=py_1 - pandocfilters=1.4.2=py_1
- parso=0.5.1=py_0 - parso=0.6.0=py_0
- pexpect=4.7.0=py37_0 - pexpect=4.8.0=py37_0
- pickleshare=0.7.5=py37_1000 - pickleshare=0.7.5=py37_1000
- pip=19.2.3=py37_0 - pip=20.0.2=py37_0
- prometheus_client=0.7.1=py_0 - prometheus_client=0.7.1=py_0
- prompt_toolkit=2.0.9=py_0 - prompt_toolkit=3.0.3=py_0
- ptyprocess=0.6.0=py_1001 - ptyprocess=0.6.0=py_1001
- pycparser=2.19=py37_1 - pycparser=2.19=py37_1
- pycurl=7.43.0.2=py37h16ce93b_1 - pycurl=7.43.0.5=py37h16ce93b_0
- pygments=2.4.2=py_0 - pygments=2.5.2=py_0
- pyjwt=1.7.1=py_0 - pyjwt=1.7.1=py_0
- pyopenssl=19.0.0=py37_0 - pyopenssl=19.1.0=py37_0
- pyrsistent=0.15.4=py37h516909a_0 - pyrsistent=0.15.7=py37h516909a_0
- pysocks=1.7.0=py37_0 - pysocks=1.7.1=py37_0
- python=3.7.3=h33d41f4_1 - python=3.7.6=h357f687_2
- python-dateutil=2.8.0=py_0 - python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0 - python-editor=1.0.4=py_0
- pyzmq=18.1.0=py37h1768529_0 - python-json-logger=0.1.11=py_0
- pyzmq=18.1.1=py37h1768529_0
- readline=8.0=hf8c457e_0 - readline=8.0=hf8c457e_0
- requests=2.22.0=py37_1 - requests=2.22.0=py37_1
- ruamel.yaml=0.16.6=py37h516909a_0
- ruamel.yaml.clib=0.2.0=py37h516909a_0
- send2trash=1.5.0=py_0 - send2trash=1.5.0=py_0
- setuptools=41.2.0=py37_0 - setuptools=45.1.0=py37_0
- six=1.12.0=py37_1000 - six=1.14.0=py37_0
- sqlalchemy=1.3.8=py37h516909a_0 - sqlalchemy=1.3.13=py37h516909a_0
- sqlite=3.29.0=hcee41ef_1 - sqlite=3.30.1=hcee41ef_0
- terminado=0.8.2=py37_0 - terminado=0.8.3=py37_0
- testpath=0.4.2=py_1001 - testpath=0.4.4=py_0
- tk=8.6.9=hed695b0_1003 - tk=8.6.10=hed695b0_0
- tornado=6.0.3=py37h516909a_0 - tornado=6.0.3=py37h516909a_0
- traitlets=4.3.2=py37_1000 - traitlets=4.3.3=py37_0
- urllib3=1.25.3=py37_0 - urllib3=1.25.7=py37_0
- wcwidth=0.1.7=py_1 - wcwidth=0.1.8=py_0
- webencodings=0.5.1=py_1 - webencodings=0.5.1=py_1
- wheel=0.33.6=py37_0 - wheel=0.34.1=py37_0
- widgetsnbextension=3.4.2=py37_1000 - widgetsnbextension=3.5.1=py37_0
- xz=5.2.4=h14c3975_1001 - xz=5.2.4=h14c3975_1001
- zeromq=4.3.2=he1b5a44_2 - zeromq=4.3.2=he1b5a44_2
- zipp=2.1.0=py_0
- zlib=1.2.11=h516909a_1006 - zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d prefix: /opt/conda/envs/r2d

12
repo2docker/buildpacks/conda/environment.py-3.7.yml
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@ -1,10 +1,10 @@
# AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY # AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
# Generated on 2019-09-13 19:50:21 UTC # Generated on 2020-01-30 10:54:05 UTC
dependencies: dependencies:
- python=3.7.* - python=3.7.*
- ipywidgets==7.4.2 - ipywidgets==7.5.1
- jupyterlab==0.35.4 - jupyterlab==1.2.6
- jupyterhub=1.0 - jupyterhub-singleuser==1.1.0
- nbconvert==5.4.1 - nbconvert==5.6.1
- notebook==5.7.8 - notebook==6.0.3
- nteract_on_jupyter==2.1.3 - nteract_on_jupyter==2.1.3

112
repo2docker/buildpacks/conda/environment.py-3.8.frozen.yml 100644
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@ -0,0 +1,112 @@
# AUTO GENERATED FROM environment.py-3.8.yml, DO NOT MANUALLY MODIFY
# Frozen on 2020-01-30 10:53:33 UTC
name: r2d
channels:
- conda-forge
- defaults
- conda-forge/label/broken
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- alembic=1.3.3=py_0
- async_generator=1.10=py_0
- attrs=19.3.0=py_0
- backcall=0.1.0=py_0
- bleach=3.1.0=py_0
- blinker=1.4=py_1
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py38_0
- certipy=0.1.3=py_0
- cffi=1.13.2=py38h8022711_0
- chardet=3.0.4=py38_1003
- cryptography=2.8=py38h72c5cf5_1
- decorator=4.4.1=py_0
- defusedxml=0.6.0=py_0
- entrypoints=0.3=py38_1000
- idna=2.8=py38_1000
- importlib_metadata=1.5.0=py38_0
- inflect=4.0.0=py38_1
- ipykernel=5.1.4=py38h5ca1d4c_0
- ipython=7.11.1=py38h5ca1d4c_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.5.1=py_0
- jaraco.itertools=5.0.0=py_0
- jedi=0.16.0=py38_0
- jinja2=2.11.0=py_0
- json5=0.8.5=py_0
- jsonschema=3.2.0=py38_0
- jupyter_client=5.3.4=py38_1
- jupyter_core=4.6.1=py38_0
- jupyter_telemetry=0.0.4=py_0
- jupyterhub-base=1.1.0=py38_2
- jupyterhub-singleuser=1.1.0=py38_2
- jupyterlab=1.2.6=py_0
- jupyterlab_server=1.0.6=py_0
- krb5=1.16.4=h2fd8d38_0
- ld_impl_linux-64=2.33.1=h53a641e_8
- libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.2.0=h24d8f2e_2
- libgomp=9.2.0=h24d8f2e_2
- libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.2.0=hdf63c60_2
- mako=1.1.0=py_0
- markupsafe=1.1.1=py38h516909a_0
- mistune=0.8.4=py38h516909a_1000
- more-itertools=8.2.0=py_0
- nbconvert=5.6.1=py38_0
- nbformat=5.0.4=py_0
- ncurses=6.1=hf484d3e_1002
- notebook=6.0.3=py38_0
- nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0
- openssl=1.1.1d=h516909a_0
- pamela=1.0.0=py_0
- pandoc=2.9.1.1=0
- pandocfilters=1.4.2=py_1
- parso=0.6.0=py_0
- pexpect=4.8.0=py38_0
- pickleshare=0.7.5=py38_1000
- pip=20.0.2=py38_0
- prometheus_client=0.7.1=py_0
- prompt_toolkit=3.0.3=py_0
- ptyprocess=0.6.0=py_1001
- pycparser=2.19=py38_1
- pycurl=7.43.0.5=py38h16ce93b_0
- pygments=2.5.2=py_0
- pyjwt=1.7.1=py_0
- pyopenssl=19.1.0=py38_0
- pyrsistent=0.15.7=py38h516909a_0
- pysocks=1.7.1=py38_0
- python=3.8.1=h357f687_2
- python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0
- python-json-logger=0.1.11=py_0
- pyzmq=18.1.1=py38h1768529_0
- readline=8.0=hf8c457e_0
- requests=2.22.0=py38_1
- ruamel.yaml=0.16.6=py38h516909a_0
- ruamel.yaml.clib=0.2.0=py38h516909a_0
- send2trash=1.5.0=py_0
- setuptools=45.1.0=py38_0
- six=1.14.0=py38_0
- sqlalchemy=1.3.13=py38h516909a_0
- sqlite=3.30.1=hcee41ef_0
- terminado=0.8.3=py38_0
- testpath=0.4.4=py_0
- tk=8.6.10=hed695b0_0
- tornado=6.0.3=py38h516909a_0
- traitlets=4.3.3=py38_0
- urllib3=1.25.7=py38_0
- wcwidth=0.1.8=py_0
- webencodings=0.5.1=py_1
- wheel=0.34.1=py38_0
- widgetsnbextension=3.5.1=py38_0
- xz=5.2.4=h14c3975_1001
- zeromq=4.3.2=he1b5a44_2
- zipp=2.1.0=py_0
- zlib=1.2.11=h516909a_1006
prefix: /opt/conda/envs/r2d

10
repo2docker/buildpacks/conda/environment.py-3.8.yml 100644
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@ -0,0 +1,10 @@
# AUTO GENERATED FROM environment.yml, DO NOT MANUALLY MODIFY
# Generated on 2020-01-30 10:53:33 UTC
dependencies:
- python=3.8.*
- ipywidgets==7.5.1
- jupyterlab==1.2.6
- jupyterhub-singleuser==1.1.0
- nbconvert==5.6.1
- notebook==6.0.3
- nteract_on_jupyter==2.1.3

10
repo2docker/buildpacks/conda/environment.yml
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@ -1,8 +1,8 @@
dependencies: dependencies:
- python=3.7 - python=3.7
- ipywidgets==7.4.2 - ipywidgets==7.5.1
- jupyterlab==0.35.4 - jupyterlab==1.2.6
- jupyterhub=1.0 - jupyterhub-singleuser==1.1.0
- nbconvert==5.4.1 - nbconvert==5.6.1
- notebook==5.7.8 - notebook==6.0.3
- nteract_on_jupyter==2.1.3 - nteract_on_jupyter==2.1.3

16
repo2docker/buildpacks/conda/freeze.py
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@ -6,7 +6,7 @@ It runs the freeze in a continuumio/miniconda3 image to ensure portability
Usage: Usage:
python freeze.py [3.5] python freeze.py [3.8]
""" """
from datetime import datetime from datetime import datetime
@ -21,8 +21,8 @@ from ruamel.yaml import YAML
# Docker image version can be different than conda version, # Docker image version can be different than conda version,
# since miniconda3 docker images seem to lag conda releases. # since miniconda3 docker images seem to lag conda releases.
MINICONDA_DOCKER_VERSION = "4.5.12" MINICONDA_DOCKER_VERSION = "4.7.12"
CONDA_VERSION = "4.7.10" CONDA_VERSION = "4.7.12"
HERE = pathlib.Path(os.path.dirname(os.path.abspath(__file__))) HERE = pathlib.Path(os.path.dirname(os.path.abspath(__file__)))
@ -76,7 +76,7 @@ def freeze(env_file, frozen_file):
"; ".join( "; ".join(
[ [
"set -ex", "set -ex",
f"conda install -yq conda={CONDA_VERSION}", f"conda install -yq -S conda={CONDA_VERSION}",
"conda config --add channels conda-forge", "conda config --add channels conda-forge",
"conda config --system --set auto_update_conda false", "conda config --system --set auto_update_conda false",
f"conda env create -v -f /r2d/{env_file.relative_to(HERE)} -n r2d", f"conda env create -v -f /r2d/{env_file.relative_to(HERE)} -n r2d",
@ -119,12 +119,12 @@ def set_python(py_env_file, py):
if __name__ == "__main__": if __name__ == "__main__":
# allow specifying which Pythons to update on argv # allow specifying which Pythons to update on argv
pys = sys.argv[1:] or ("2.7", "3.5", "3.6", "3.7") pys = sys.argv[1:] or ("2.7", "3.6", "3.7", "3.8")
default_py = "3.7"
for py in pys: for py in pys:
env_file = pathlib.Path(str(ENV_FILE_T).format(py=py)) env_file = pathlib.Path(str(ENV_FILE_T).format(py=py))
set_python(env_file, py) set_python(env_file, py)
frozen_file = pathlib.Path(os.path.splitext(env_file)[0] + ".frozen.yml") frozen_file = pathlib.Path(os.path.splitext(env_file)[0] + ".frozen.yml")
freeze(env_file, frozen_file) freeze(env_file, frozen_file)
if py == default_py:
# use last version as default shutil.copy(frozen_file, FROZEN_FILE)
shutil.copy(frozen_file, FROZEN_FILE)

4
repo2docker/buildpacks/conda/install-miniconda.bash
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@ -3,11 +3,11 @@
set -ex set -ex
cd $(dirname $0) cd $(dirname $0)
MINICONDA_VERSION=4.7.10 MINICONDA_VERSION=4.7.12.1
CONDA_VERSION=4.7.12 CONDA_VERSION=4.7.12
# Only MD5 checksums are available for miniconda # Only MD5 checksums are available for miniconda
# Can be obtained from https://repo.continuum.io/miniconda/ # Can be obtained from https://repo.continuum.io/miniconda/
MD5SUM="1c945f2b3335c7b2b15130b1b2dc5cf4" MD5SUM="81c773ff87af5cfac79ab862942ab6b3"
URL="https://repo.continuum.io/miniconda/Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh" URL="https://repo.continuum.io/miniconda/Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh"
INSTALLER_PATH=/tmp/miniconda-installer.sh INSTALLER_PATH=/tmp/miniconda-installer.sh

13
repo2docker/buildpacks/julia/julia_require.py
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@ -1,5 +1,8 @@
"""Generates a Dockerfile based on an input matrix with REQUIRE for legacy Julia""" """Generates a Dockerfile based on an input matrix with REQUIRE for legacy Julia"""
from distutils.version import LooseVersion as V
import os import os
from ..python import PythonBuildPack from ..python import PythonBuildPack
@ -11,6 +14,16 @@ class JuliaRequireBuildPack(PythonBuildPack):
minor_julias = {"0.6": "0.6.4", "0.7": "0.7.0", "1.0": "1.0.4", "1.1": "1.1.1"} minor_julias = {"0.6": "0.6.4", "0.7": "0.7.0", "1.0": "1.0.4", "1.1": "1.1.1"}
major_julias = {"1": "1.1.1"} major_julias = {"1": "1.1.1"}
@property
def python_version(self):
# IJulia doesn't build on julia 0.6
# due to old incompatibilities with Jupyter-core >= 4.5,
# so use the similarly-old Python 3.5 base environment
if V(self.julia_version) < V("0.7"):
return "3.5"
else:
return super().python_version
@property @property
def julia_version(self): def julia_version(self):
require = self.binder_path("REQUIRE") require = self.binder_path("REQUIRE")

10
tests/base/node10/verify
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@ -1,13 +1,11 @@
#!/bin/sh #!/bin/sh
set -e set -ex
# check node from conda-forge
# check node system package and its version
which node which node
node --version node --version
node --version | grep v11 node --version | grep v10
# check node system package
/usr/bin/node --version
/usr/bin/node --version | grep v10
which npm which npm
npm --version npm --version

2
tests/conda/py38/environment.yml 100644
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@ -0,0 +1,2 @@
dependencies:
- python=3.8

4
tests/conda/py38/verify 100755
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@ -0,0 +1,4 @@
#!/usr/bin/env python
import sys
assert sys.version_info[:2] == (3, 8), sys.version