From 24def164edd2b7ff6e03746a9180bee15abbe818 Mon Sep 17 00:00:00 2001
From: nuest <daniel.nuest@uni-muenster.de>
Date: Mon, 29 Oct 2018 20:52:05 +0100
Subject: [PATCH] verify R installation for r-markdown with Stencila

---
 .../{basic/archive => pyjp}/py-jupyter/bibliography.bibtex   | 0
 .../stencila/{basic/archive => pyjp}/py-jupyter/manifest.xml | 0
 .../{basic/archive => pyjp}/py-jupyter/py-jupyter.ipynb      | 0
 .../archive => pyjp}/py-jupyter/py-jupyter.ipynb.jats.xml    | 0
 tests/stencila/{basic => pyjp}/verify                        | 0
 .../{basic/archive => r}/r-markdown/bibliography.bibtex      | 0
 tests/stencila/{basic/archive => r}/r-markdown/manifest.xml  | 0
 tests/stencila/{basic/archive => r}/r-markdown/rmarkdown.Rmd | 0
 .../{basic/archive => r}/r-markdown/rmarkdown.Rmd.jats.xml   | 0
 tests/stencila/r/verify                                      | 5 +++++
 10 files changed, 5 insertions(+)
 rename tests/stencila/{basic/archive => pyjp}/py-jupyter/bibliography.bibtex (100%)
 rename tests/stencila/{basic/archive => pyjp}/py-jupyter/manifest.xml (100%)
 rename tests/stencila/{basic/archive => pyjp}/py-jupyter/py-jupyter.ipynb (100%)
 rename tests/stencila/{basic/archive => pyjp}/py-jupyter/py-jupyter.ipynb.jats.xml (100%)
 rename tests/stencila/{basic => pyjp}/verify (100%)
 rename tests/stencila/{basic/archive => r}/r-markdown/bibliography.bibtex (100%)
 rename tests/stencila/{basic/archive => r}/r-markdown/manifest.xml (100%)
 rename tests/stencila/{basic/archive => r}/r-markdown/rmarkdown.Rmd (100%)
 rename tests/stencila/{basic/archive => r}/r-markdown/rmarkdown.Rmd.jats.xml (100%)
 create mode 100755 tests/stencila/r/verify

diff --git a/tests/stencila/basic/archive/py-jupyter/bibliography.bibtex b/tests/stencila/pyjp/py-jupyter/bibliography.bibtex
similarity index 100%
rename from tests/stencila/basic/archive/py-jupyter/bibliography.bibtex
rename to tests/stencila/pyjp/py-jupyter/bibliography.bibtex
diff --git a/tests/stencila/basic/archive/py-jupyter/manifest.xml b/tests/stencila/pyjp/py-jupyter/manifest.xml
similarity index 100%
rename from tests/stencila/basic/archive/py-jupyter/manifest.xml
rename to tests/stencila/pyjp/py-jupyter/manifest.xml
diff --git a/tests/stencila/basic/archive/py-jupyter/py-jupyter.ipynb b/tests/stencila/pyjp/py-jupyter/py-jupyter.ipynb
similarity index 100%
rename from tests/stencila/basic/archive/py-jupyter/py-jupyter.ipynb
rename to tests/stencila/pyjp/py-jupyter/py-jupyter.ipynb
diff --git a/tests/stencila/basic/archive/py-jupyter/py-jupyter.ipynb.jats.xml b/tests/stencila/pyjp/py-jupyter/py-jupyter.ipynb.jats.xml
similarity index 100%
rename from tests/stencila/basic/archive/py-jupyter/py-jupyter.ipynb.jats.xml
rename to tests/stencila/pyjp/py-jupyter/py-jupyter.ipynb.jats.xml
diff --git a/tests/stencila/basic/verify b/tests/stencila/pyjp/verify
similarity index 100%
rename from tests/stencila/basic/verify
rename to tests/stencila/pyjp/verify
diff --git a/tests/stencila/basic/archive/r-markdown/bibliography.bibtex b/tests/stencila/r/r-markdown/bibliography.bibtex
similarity index 100%
rename from tests/stencila/basic/archive/r-markdown/bibliography.bibtex
rename to tests/stencila/r/r-markdown/bibliography.bibtex
diff --git a/tests/stencila/basic/archive/r-markdown/manifest.xml b/tests/stencila/r/r-markdown/manifest.xml
similarity index 100%
rename from tests/stencila/basic/archive/r-markdown/manifest.xml
rename to tests/stencila/r/r-markdown/manifest.xml
diff --git a/tests/stencila/basic/archive/r-markdown/rmarkdown.Rmd b/tests/stencila/r/r-markdown/rmarkdown.Rmd
similarity index 100%
rename from tests/stencila/basic/archive/r-markdown/rmarkdown.Rmd
rename to tests/stencila/r/r-markdown/rmarkdown.Rmd
diff --git a/tests/stencila/basic/archive/r-markdown/rmarkdown.Rmd.jats.xml b/tests/stencila/r/r-markdown/rmarkdown.Rmd.jats.xml
similarity index 100%
rename from tests/stencila/basic/archive/r-markdown/rmarkdown.Rmd.jats.xml
rename to tests/stencila/r/r-markdown/rmarkdown.Rmd.jats.xml
diff --git a/tests/stencila/r/verify b/tests/stencila/r/verify
new file mode 100755
index 00000000..2bd4ad54
--- /dev/null
+++ b/tests/stencila/r/verify
@@ -0,0 +1,5 @@
+#!/bin/sh
+
+jupyter serverextension list 2>&1 | grep nbstencilaproxy
+jupyter nbextension list 2>&1 | grep nbstencilaproxy
+R -e "library('stencila');"