repo2docker/repo2docker/buildpacks/_r_base.py

"""
Base information for using R in BuildPacks.

Keeping this in r.py would lead to cyclic imports.
"""
from ..semver import parse_version as V


def rstudio_base_scripts(r_version):
    """Base steps to install RStudio and shiny-server."""

    # Shiny server (not the package!) seems to be the same version for all R versions
    shiny_server_url = "https://download3.rstudio.org/ubuntu-14.04/x86_64/shiny-server-1.5.17.973-amd64.deb"
    shiny_proxy_version = "1.1"
    shiny_sha256sum = "80f1e48f6c824be7ef9c843bb7911d4981ac7e8a963e0eff823936a8b28476ee"

    if r_version and V(r_version) <= V("4.1"):
        # Older RStudio and jupyter-rsession-proxy for v4.1 and below
        rstudio_url = "https://download2.rstudio.org/server/bionic/amd64/rstudio-server-1.3.959-amd64.deb"
        rstudio_sha256sum = (
            "187af05cab1221282487fdc33f4b161484c3228eaade3d6697b1d41c206ee6d9"
        )
        rsession_proxy_version = "1.4"
    else:
        rstudio_url = "https://download2.rstudio.org/server/bionic/amd64/rstudio-server-2021.09.1-372-amd64.deb"
        rstudio_sha256sum = (
            "c58df09468870b89f1796445853dce2dacaa0fc5b7bb1f92b036fa8da1d1f8a3"
        )
        rsession_proxy_version = "2.0.1"

    return [
        (
            "root",
            # we should have --no-install-recommends on all our apt-get install commands,
            # but here it's important because these recommend r-base,
            # which will upgrade the installed version of R, undoing our pinned version
            r"""
            curl --silent --location --fail {rstudio_url} > /tmp/rstudio.deb && \
            curl --silent --location --fail {shiny_server_url} > /tmp/shiny.deb && \
            echo '{rstudio_sha256sum} /tmp/rstudio.deb' | sha256sum -c - && \
            echo '{shiny_sha256sum} /tmp/shiny.deb' | sha256sum -c - && \
            apt-get update > /dev/null && \
            apt install -y --no-install-recommends /tmp/rstudio.deb /tmp/shiny.deb && \
            rm /tmp/rstudio.deb && \
            apt-get -qq purge && \
            apt-get -qq clean && \
            rm -rf /var/lib/apt/lists/*
            """.format(
                rstudio_url=rstudio_url,
                rstudio_sha256sum=rstudio_sha256sum,
                shiny_server_url=shiny_server_url,
                shiny_sha256sum=shiny_sha256sum,
            ),
        ),
        (
            "${NB_USER}",
            # Install jupyter-rsession-proxy
            r"""
                pip install --no-cache \
                    jupyter-rsession-proxy=={rsession_proxy_version} \
                    jupyter-shiny-proxy=={shiny_proxy_version}
                """.format(
                rsession_proxy_version=rsession_proxy_version,
                shiny_proxy_version=shiny_proxy_version,
            ),
        ),
        (
            # Not all of these locations are configurable; so we make sure
            # they exist and have the correct permissions
            "root",
            r"""
                install -o ${NB_USER} -g ${NB_USER} -d /var/log/shiny-server && \
                install -o ${NB_USER} -g ${NB_USER} -d /var/lib/shiny-server && \
                install -o ${NB_USER} -g ${NB_USER} /dev/null /var/log/shiny-server.log && \
                install -o ${NB_USER} -g ${NB_USER} /dev/null /var/run/shiny-server.pid
                """,
        ),
    ]