diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 61eb5e714..62422c4dd 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -29,6 +29,11 @@ repos:
     hooks:
       - id: black
 
+  - repo: https://github.com/pycqa/isort
+    rev: 5.10.1
+    hooks:
+      - id: isort
+
   - repo: https://github.com/pycqa/flake8
     rev: 5.0.4
     hooks:
diff --git a/api/setup.cfg b/api/setup.cfg
index a30756860..b36d56491 100644
--- a/api/setup.cfg
+++ b/api/setup.cfg
@@ -1,6 +1,3 @@
-[isort]
-skip_glob = .tox,.git,*/migrations/*,*/static/CACHE/*,docs,node_modules
-
 [pep8]
 max-line-length = 120
 exclude=.tox,.git,*/migrations/*,*/static/CACHE/*,docs,node_modules
diff --git a/pyproject.toml b/pyproject.toml
index 7455c0fe1..43451f58e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -60,3 +60,8 @@ showcontent = true
 [tool.black]
 extend-exclude = "(api/.*/migrations/.*)"
 force-exclude = "(api/.*/migrations/.*)" # pre-commit pass files as args
+
+[tool.isort]
+profile = "black"
+extend_skip_glob = ["api/*/migrations/*"]
+known_first_party = ["funkwhale_api", "config"]