From e53eda5a1af5a8174a46f6a5cd5ecf880b491c17 Mon Sep 17 00:00:00 2001
From: Stephen Mather <1174901+smathermather@users.noreply.github.com>
Date: Fri, 18 Oct 2024 21:06:08 -0400
Subject: [PATCH 1/4] remove ignore-gsd reference

---
 source/tutorials.rst | 1 -
 1 file changed, 1 deletion(-)

diff --git a/source/tutorials.rst b/source/tutorials.rst
index 437477c6d..a33563501 100644
--- a/source/tutorials.rst
+++ b/source/tutorials.rst
@@ -17,7 +17,6 @@ Creating High Quality Orthophotos
 Without any parameter tweaks, ODM chooses a good compromise between quality, speed and memory usage. If you want to get higher quality results, you need to tweak some parameters:
 
  * ``--orthophoto-resolution`` is the resolution of the orthophoto in cm/pixel. Decrease this value for a higher resolution result.
- * ``--ignore-gsd`` is a flag that instructs ODM to skip certain memory and speed optimizations that directly affect the orthophoto. Using this flag will increase runtime and memory usage, but may produce sharper results.
  * ``--texturing-data-term`` should be set to `area` in forest areas.
  * ``--mesh-size`` should be increased to ``300000-600000`` and ``--mesh-octree-depth`` should be increased to ``10-11`` in urban areas to recreate better buildings / roofs.
 

From c1013ec6ca2748896cbd3fa23a292900ea52c894 Mon Sep 17 00:00:00 2001
From: Stephen Mather <1174901+smathermather@users.noreply.github.com>
Date: Fri, 18 Oct 2024 21:07:35 -0400
Subject: [PATCH 2/4] purge ignore-gsd

---
 source/tutorials.rst | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/source/tutorials.rst b/source/tutorials.rst
index a33563501..d335485d2 100644
--- a/source/tutorials.rst
+++ b/source/tutorials.rst
@@ -495,7 +495,7 @@ Resize droplet, pull pin, run away
 
 ::
 
-   nohup python run.py myproject --split 1 --split-overlap 0 --ignore-gsd --depthmap-resolution 1000 --orthophoto-resolution 5 --dem-resolution 15 --pc-las --dsm
+   nohup python run.py myproject --split 1 --split-overlap 0 --depthmap-resolution 1000 --orthophoto-resolution 5 --dem-resolution 15 --pc-las --dsm
 
 -  This points ODM at the folder (in this example)
    ``/mnt/odmdata/myproject/``. Provided the image_groups.txt and
@@ -893,9 +893,9 @@ Like with docker, additional `Options and Flags <https://docs.opendronemap.org/a
 
    singularity run --bind /my/project:/datasets/code \
    --writable-tmpfs odm_latest.sif \
-   --orthophoto-png --mesh-octree-depth 12 --ignore-gsd --dtm \
+   --orthophoto-png --mesh-octree-depth 12 --dtm \
    --smrf-threshold 0.4 --smrf-window 24 --dsm --pc-csv --pc-las --orthophoto-kmz \
-   --ignore-gsd --matcher-type flann --feature-quality ultra --max-concurrency 16 \
+   --matcher-type flann --feature-quality ultra --max-concurrency 16 \
    --use-hybrid-bundle-adjustment --build-overviews --time --min-num-features 10000 \
    --project-path /datasets
 

From 8e93ba5a100ae373867abdfe1ed4013541a81b62 Mon Sep 17 00:00:00 2001
From: Stephen Mather <1174901+smathermather@users.noreply.github.com>
Date: Fri, 18 Oct 2024 21:09:03 -0400
Subject: [PATCH 3/4] add animated gif

---
 source/arguments_edit/align.rst | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/source/arguments_edit/align.rst b/source/arguments_edit/align.rst
index c76616871..1afd0bb3f 100644
--- a/source/arguments_edit/align.rst
+++ b/source/arguments_edit/align.rst
@@ -1,3 +1,9 @@
 Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
 
 The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.
+
+.. figure:: images/align_pc.gif
+   :alt: Animated gif comparing two separately processed, but aligned digital surface models.
+   :align: center
+
+Animated gif comparing two separately processed, but aligned digital surface models.

From e9e749a47e19e37a173022307d9591272e7fc77a Mon Sep 17 00:00:00 2001
From: Stephen Mather <1174901+smathermather@users.noreply.github.com>
Date: Fri, 18 Oct 2024 21:14:31 -0400
Subject: [PATCH 4/4] Add reference to tutorial

---
 source/arguments_edit/align.rst | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/source/arguments_edit/align.rst b/source/arguments_edit/align.rst
index 1afd0bb3f..6f14cf8f2 100644
--- a/source/arguments_edit/align.rst
+++ b/source/arguments_edit/align.rst
@@ -1,3 +1,5 @@
+See `Multi-temporal datasets for further usage information. </tutorials/#multi-temporal-datasets>`_
+
 Uses `CODEM <https://github.com/NCALM-UH/CODEM>`_, credits to Craig Glennie and the group at CRREL.
 
 The details of the method are available at https://github.com/NCALM-UH/CODEM/blob/main/docs/details.md.