Simplified DEM parameters, added odm_filterpoints, point cloud filtering for all products

Former-commit-id: 3b0dd4b3a0
pull/1161/head
Piero Toffanin 2019-03-05 19:03:04 -05:00
rodzic 58e32a5ce6
commit d15da00fe7
11 zmienionych plików z 470 dodań i 83 usunięć

Wyświetl plik

@ -8,6 +8,8 @@ add_subdirectory(odm_extract_utm)
add_subdirectory(odm_georef)
add_subdirectory(odm_orthophoto)
add_subdirectory(odm_cleanmesh)
add_subdirectory(odm_filterpoints)
if (ODM_BUILD_SLAM)
add_subdirectory(odm_slam)
endif ()

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@ -0,0 +1,21 @@
project(odm_filterpoints)
cmake_minimum_required(VERSION 2.8)
# Add compiler options.
add_definitions(-Wall -Wextra -Wconversion -pedantic -std=c++11)
# PDAL and jsoncpp
find_package(PDAL REQUIRED CONFIG)
include_directories(${PDAL_INCLUDE_DIRS})
include_directories("${PROJECT_SOURCE_DIR}/../../SuperBuild/src/pdal/vendor/jsoncpp/dist")
link_directories(${PDAL_LIBRARY_DIRS})
add_definitions(${PDAL_DEFINITIONS})
# Add source directory
aux_source_directory("./src" SRC_LIST)
# Add exectuteable
add_executable(${PROJECT_NAME} ${SRC_LIST})
# Link
target_link_libraries(${PROJECT_NAME} jsoncpp ${PDAL_LIBRARIES})

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@ -0,0 +1,375 @@
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@ -314,6 +314,14 @@ def config():
default=False,
help='Export the georeferenced point cloud in LAS format. Default: %(default)s')
parser.add_argument('--pc-maxsd',
metavar='<positive float>',
type=float,
default=2.5,
help='Filters the point cloud by removing points that deviate more than maxsd standard deviations from the local mean. Set to 0 to disable filtering.'
'\nDefault: '
'%(default)s')
parser.add_argument('--texturing-data-term',
metavar='<string>',
default='gmi',
@ -420,14 +428,6 @@ def config():
help='DSM/DTM resolution in cm / pixel.'
'\nDefault: %(default)s')
parser.add_argument('--dem-maxsd',
metavar='<positive float>',
type=float,
default=2.5,
help='Points that deviate more than maxsd standard deviations from the local mean '
'are discarded. \nDefault: '
'%(default)s')
parser.add_argument('--dem-decimation',
metavar='<positive integer>',
default=1,

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@ -56,7 +56,6 @@ def create_dems(filenames, demtype, radius=['0.56'], gapfill=False,
def create_dem(filenames, demtype, radius, decimation=None,
maxsd=None, maxz=None,
products=['idw'], outdir='', suffix='', verbose=False, resolution=0.1):
""" Create DEM from collection of LAS files """
start = datetime.now()
@ -71,10 +70,6 @@ def create_dem(filenames, demtype, radius, decimation=None,
# JSON pipeline
json = pdal.json_gdal_base(bname, products, radius, resolution)
# A DSM for meshing does not use additional filters
if demtype != 'mesh_dsm':
json = pdal.json_add_filters(json, maxsd, maxz)
if demtype == 'dsm':
json = pdal.json_add_classification_filter(json, 2, equality='max')
elif demtype == 'dtm':

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@ -102,75 +102,6 @@ def json_add_classification_filter(json, classification, equality="equals"):
return json
def json_add_maxsd_filter(json, meank=20, thresh=3.0):
""" Add outlier Filter element and return """
json['pipeline'].insert(0, {
'type': 'filters.outlier',
'method': 'statistical',
'mean_k': meank,
'multiplier': thresh
})
return json
def json_add_maxz_filter(json, maxz):
""" Add max elevation Filter element and return """
json['pipeline'].insert(0, {
'type': 'filters.range',
'limits': 'Z[:{0}]'.format(maxz)
})
return json
def json_add_maxangle_filter(json, maxabsangle):
""" Add scan angle Filter element and return """
json['pipeline'].insert(0, {
'type': 'filters.range',
'limits': 'ScanAngleRank[{0}:{1}]'.format(str(-float(maxabsangle)), maxabsangle)
})
return json
def json_add_scanedge_filter(json, value):
""" Add EdgeOfFlightLine Filter element and return """
json['pipeline'].insert(0, {
'type': 'filters.range',
'limits': 'EdgeOfFlightLine[{0}:{0}]'.format(value)
})
return json
def json_add_returnnum_filter(json, value):
""" Add ReturnNum Filter element and return """
json['pipeline'].insert(0, {
'type': 'filters.range',
'limits': 'ReturnNum[{0}:{0}]'.format(value)
})
return json
def json_add_filters(json, maxsd=None, maxz=None, maxangle=None, returnnum=None):
if maxsd is not None:
json = json_add_maxsd_filter(json, thresh=maxsd)
if maxz is not None:
json = json_add_maxz_filter(json, maxz)
if maxangle is not None:
json = json_add_maxangle_filter(json, maxangle)
if returnnum is not None:
json = json_add_returnnum_filter(json, returnnum)
return json
def json_add_crop_filter(json, wkt):
""" Add cropping polygon as Filter Element and return """
json['pipeline'].insert(0, {
'type': 'filters.crop',
'polygon': wkt
})
return json
def is_ply_file(filename):
_, ext = os.path.splitext(filename)
return ext.lower() == '.ply'

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@ -0,0 +1,54 @@
import os, sys
from opendm import system
from opendm import log
from opendm import context
def filter(pointCloudPath, standard_deviation=2.5, meank=16, verbose=False):
"""
Filters a point cloud in place (it will replace the input file with the filtered result).
"""
if standard_deviation <= 0 or meank <= 0:
log.ODM_INFO("Skipping point cloud filtering")
return
log.ODM_INFO("Filtering point cloud (statistical, meanK {}, standard deviation {})".format(meank, standard_deviation))
if not os.path.exists(pointCloudPath):
log.ODM_ERROR("{} does not exist, cannot filter point cloud. The program will now exit.".format(pointCloudPath))
sys.exit(1)
filter_program = os.path.join(context.odm_modules_path, 'odm_filterpoints')
if not os.path.exists(filter_program):
log.ODM_WARNING("{} program not found. Will skip filtering, but this installation should be fixed.")
return
pc_path, pc_filename = os.path.split(pointCloudPath)
# pc_path = path/to
# pc_filename = pointcloud.ply
basename, ext = os.path.splitext(pc_filename)
# basename = pointcloud
# ext = .ply
tmpPointCloud = os.path.join(pc_path, "{}.tmp{}".format(basename, ext))
filterArgs = {
'bin': filter_program,
'inputFile': pointCloudPath,
'outputFile': tmpPointCloud,
'sd': standard_deviation,
'meank': meank,
'verbose': '--verbose' if verbose else '',
}
system.run('{bin} -inputFile {inputFile} '
'-outputFile {outputFile} '
'-sd {sd} '
'-meank {meank} {verbose} '.format(**filterArgs))
# Remove input file, swap temp file
if os.path.exists(tmpPointCloud):
os.remove(pointCloudPath)
os.rename(tmpPointCloud, pointCloudPath)
else:
log.ODM_WARNING("{} not found, filtering has failed.".format(tmpPointCloud))

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@ -93,7 +93,6 @@ class ODMDEMCell(ecto.Cell):
gapfill=True,
outdir=odm_dem_root,
resolution=resolution / 100.0,
maxsd=args.dem_maxsd,
decimation=args.dem_decimation,
verbose=args.verbose,
max_workers=get_max_concurrency_for_dem(args.max_concurrency,tree.odm_georeferencing_model_laz)

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@ -9,6 +9,7 @@ from opendm import types
from opendm import system
from opendm import context
from opendm.cropper import Cropper
from opendm import point_cloud
class ODMGeoreferencingCell(ecto.Cell):

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@ -170,6 +170,9 @@ class ODMOpenSfMCell(ecto.Cell):
if args.fast_orthophoto:
system.run('PYTHONPATH=%s %s/bin/opensfm export_ply --no-cameras %s' %
(context.pyopencv_path, context.opensfm_path, tree.opensfm))
# Filter
point_cloud.filter(os.path.join(tree.opensfm, 'reconstruction.ply'), standard_deviation=args.pc_maxsd, verbose=args.verbose)
elif args.use_opensfm_dense:
# Undistort images at full scale in JPG
# (TODO: we could compare the size of the PNGs if they are < than depthmap_resolution
@ -179,6 +182,8 @@ class ODMOpenSfMCell(ecto.Cell):
system.run('PYTHONPATH=%s %s/bin/opensfm compute_depthmaps %s' %
(context.pyopencv_path, context.opensfm_path, tree.opensfm))
# Filter
point_cloud.filter(tree.opensfm_model, standard_deviation=args.pc_maxsd, verbose=args.verbose)
else:
log.ODM_WARNING('Found a valid OpenSfM reconstruction file in: %s' %
tree.opensfm_reconstruction)

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@ -4,6 +4,7 @@ from opendm import log
from opendm import io
from opendm import system
from opendm import context
from opendm import point_cloud
class ODMSmvsCell(ecto.Cell):
@ -91,6 +92,9 @@ class ODMSmvsCell(ecto.Cell):
old_file = smvs_files[-1]
if not (io.rename_file(old_file, tree.smvs_model)):
log.ODM_WARNING("File %s does not exist, cannot be renamed. " % old_file)
# Filter
point_cloud.filter(tree.smvs_model, standard_deviation=args.pc_maxsd, verbose=args.verbose)
else:
log.ODM_WARNING("Cannot find a valid point cloud (smvs-XX.ply) in %s. Check the console output for errors." % tree.smvs)
else: