Modified dockerfile, configure.sh script to install lidar2dems module

Former-commit-id: 5fb9967368

.gitmodules

@@ -1,3 +1,3 @@
-[submodule "src/bundler"]
-	path = src/bundler
-	url = https://github.com/chris-cooper/bundler_sfm
+[submodule "modules/lidar2dems"]
+	path = modules/lidar2dems
+	url = https://github.com/pierotofy/lidar2dems

Dockerfile

@@ -14,12 +14,12 @@ RUN apt-get install --no-install-recommends -y git cmake python-pip build-essent
 libgtk2.0-dev libavcodec-dev libavformat-dev libswscale-dev python-dev python-numpy libtbb2 libtbb-dev libjpeg-dev libpng-dev libtiff-dev libjasper-dev libflann-dev \
 libproj-dev libxext-dev liblapack-dev libeigen3-dev libvtk5-dev python-networkx libgoogle-glog-dev libsuitesparse-dev libboost-filesystem-dev libboost-iostreams-dev \
 libboost-regex-dev libboost-python-dev libboost-date-time-dev libboost-thread-dev python-pyproj python-empy python-nose python-pyside python-pyexiv2 python-scipy \
-jhead liblas-bin python-matplotlib libatlas-base-dev libgmp-dev libmpfr-dev
+jhead liblas-bin python-matplotlib libatlas-base-dev libgmp-dev libmpfr-dev swig2.0 python-wheel libboost-log-dev libxslt-dev
 
 RUN apt-get remove libdc1394-22-dev
 RUN pip install --upgrade pip
 RUN pip install setuptools
-RUN pip install -U PyYAML exifread gpxpy xmltodict catkin-pkg appsettings
+RUN pip install -U PyYAML exifread gpxpy xmltodict catkin-pkg appsettings https://github.com/Applied-GeoSolutions/gippy/archive/v0.3.9.tar.gz
 
 ENV PYTHONPATH="$PYTHONPATH:/code/SuperBuild/install/lib/python2.7/dist-packages"
 ENV PYTHONPATH="$PYTHONPATH:/code/SuperBuild/src/opensfm"
@@ -44,10 +44,17 @@ COPY /SuperBuild/CMakeLists.txt /code/SuperBuild/CMakeLists.txt
 COPY docker.settings.yaml /code/settings.yaml
 COPY VERSION /code/VERSION
 
+
 #Compile code in SuperBuild and root directories
 
 RUN cd SuperBuild && mkdir build && cd build && cmake  .. && make -j$(nproc)     && cd ../.. && mkdir build && cd build && cmake .. && make -j$(nproc)
 
+# Update and initialize git submodules
+RUN git submodule update --init
+
+# Setup lidar2dems
+RUN CPLUS_INCLUDE_PATH=/usr/include/gdal C_INCLUDE_PATH=/usr/include/gdal /code/modules/lidar2dems/setup.py install && ln -s /code/SuperBuild/build/pdal/bin/pdal /usr/bin/pdal
+
 RUN apt-get -y remove libgl1-mesa-dri git cmake python-pip build-essential
 RUN apt-get install -y libvtk5-dev
 

configure.sh

@@ -86,6 +86,23 @@ install() {
                          jhead \
                          liblas-bin
 
+    echo "Installing lidar2dems Dependencies"
+    sudo apt-get install -y -qq swig2.0 \
+                         python-wheel \
+                         libboost-log-dev  \
+                         libxslt-dev
+
+    echo "Updating and initializing git submodules"
+    git submodule update --init
+
+    echo "Installing lidar2dems"
+    cd ${RUNPATH}/modules/lidar2dems
+    CPLUS_INCLUDE_PATH=/usr/include/gdal C_INCLUDE_PATH=/usr/include/gdal ./setup.py install
+
+    if [ ! -f /usr/bin/pdal ]; then
+        ln -s ${RUNPATH}/SuperBuild/build/pdal/bin/pdal /usr/bin/pdal
+    fi
+    
     echo "Compiling SuperBuild"
     cd ${RUNPATH}/SuperBuild
     mkdir -p build && cd build

modules/lidar2dems

@@ -0,0 +1 @@
+Subproject commit fe0710bd68e6add3be5621e94f20f56c1e99fd00