Use pip to install python deps, simplified configure.sh a bit

Dockerfile

@@ -50,9 +50,7 @@ RUN apt-get install --no-install-recommends -y \
   python-dev \
   python-gdal \
   python-matplotlib \
-  python-networkx \
   python-pip \
-  python-pyproj \
   python-software-properties \
   python-wheel \
   swig2.0 \
@@ -67,18 +65,19 @@ RUN pip install -U \
   exifread \
   gpxpy \
   loky \
-  numpy==1.15.4 \
-  psutil \
-  pyproj \
   PyYAML==3.13 \
   repoze.lru \
-  scipy==1.2.1 \
-  shapely \
   xmltodict \
   rasterio \
   attrs==19.1.0 \
   pyodm==1.5.2b1 \
   Pillow \
+  networkx \
+  scipy==1.2.1 \
+  numpy==1.15.4 \
+  shapely \
+  pyproj \
+  psutil \
   joblib
 
 RUN pip install --upgrade cryptography && python -m easy_install --upgrade pyOpenSSL

configure.sh

@@ -28,7 +28,11 @@ install() {
                          libjsoncpp-dev \
                          python-gdal \
                          grass-core \
-                         libssl-dev
+                         libssl-dev \
+                         liblas-bin \
+                         swig2.0 \
+                         python-wheel \
+                         libboost-log-dev
 
     echo "Getting CMake 3.1 for MVS-Texturing"
     apt-get install -y software-properties-common python-software-properties
@@ -42,7 +46,6 @@ install() {
                          libavformat-dev \
                          libswscale-dev \
                          python-dev \
-                         python-numpy \
                          libtbb2 \
                          libtbb-dev \
                          libjpeg-dev \
@@ -59,18 +62,15 @@ install() {
     echo "Removing libdc1394-22-dev due to python opencv issue"
     apt-get remove libdc1394-22-dev
 
-    ## Installing OpenSfM Requisites
     echo "Installing OpenSfM Dependencies"
-    apt-get install -y -qq python-networkx \
-                         libgoogle-glog-dev \
+    apt-get install -y -qq libgoogle-glog-dev \
                          libsuitesparse-dev \
                          libboost-filesystem-dev \
                          libboost-iostreams-dev \
                          libboost-regex-dev \
                          libboost-python-dev \
                          libboost-date-time-dev \
-                         libboost-thread-dev \
-                         python-pyproj
+                         libboost-thread-dev
 
     pip install -U PyYAML==3.13 \
                         exifread \
@@ -83,25 +83,18 @@ install() {
                         attrs==19.1.0 \
                         pyodm==1.5.2b1 \
                         Pillow \
+                        networkx \
+                        scipy==1.2.1 \
+                        numpy==1.15.4 \
+                        shapely \
+                        pyproj \
+                        psutil \
                         joblib
 
     # Fix:  /usr/local/lib/python2.7/dist-packages/requests/__init__.py:83: RequestsDependencyWarning: Old version of cryptography ([1, 2, 3]) may cause slowdown.
     pip install --upgrade cryptography
     python -m easy_install --upgrade pyOpenSSL
 
-
-    echo "Installing OpenDroneMap Dependencies"
-    apt-get install -y -qq python-scipy \
-                         liblas-bin
-
-    echo "Installing lidar2dems Dependencies"
-    apt-get install -y -qq swig2.0 \
-                         python-wheel \
-                         libboost-log-dev
-
-    echo "Installing split-merge Dependencies"
-    pip install -U scipy==1.2.1 numpy==1.15.4 shapely pyproj psutil
-
     echo "Compiling SuperBuild"
     cd ${RUNPATH}/SuperBuild
     mkdir -p build && cd build

portable.Dockerfile

@@ -50,9 +50,7 @@ RUN apt-get install --no-install-recommends -y \
   python-dev \
   python-gdal \
   python-matplotlib \
-  python-networkx \
   python-pip \
-  python-pyproj \
   python-software-properties \
   python-wheel \
   swig2.0 \
@@ -67,18 +65,19 @@ RUN pip install -U \
   exifread \
   gpxpy \
   loky \
-  numpy==1.15.4 \
-  psutil \
-  pyproj \
   PyYAML==3.13 \
   repoze.lru \
-  scipy==1.2.1 \
-  shapely \
   xmltodict \
   rasterio \
   attrs==19.1.0 \
   pyodm==1.5.2b1 \
   Pillow \
+  networkx \
+  scipy==1.2.1 \
+  numpy==1.15.4 \
+  shapely \
+  pyproj \
+  psutil \
   joblib
 
 RUN pip install --upgrade cryptography && python -m easy_install --upgrade pyOpenSSL